Wall clock time and date at job start Wed Apr 1 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47532 * 270.00359 * 3 2 1 5 5 H 1.48500 * 109.47159 * 30.00228 * 3 2 1 6 6 H 1.48497 * 109.47206 * 150.00174 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00694 * 172.22660 * 7 2 1 9 9 C 1.50709 * 119.99765 * 352.22828 * 7 2 1 10 10 C 1.52996 * 115.54911 * 84.78258 * 9 7 2 11 11 S 1.81403 * 109.47113 * 65.20252 * 10 9 7 12 12 O 1.42096 * 110.54313 * 62.35593 * 11 10 9 13 13 O 1.42102 * 110.54105 * 285.60679 * 11 10 9 14 14 N 1.65598 * 104.44913 * 173.98248 * 11 10 9 15 15 C 1.47157 * 120.98208 * 270.02145 * 14 11 10 16 16 C 1.53301 * 108.38459 * 230.51454 * 15 14 11 17 17 O 1.42967 * 109.22120 * 307.69962 * 16 15 14 18 18 C 1.42956 * 114.16813 * 62.57869 * 17 16 15 19 19 H 1.09006 * 109.55519 * 57.37000 * 18 17 16 20 20 C 1.53002 * 109.51229 * 177.49270 * 18 17 16 21 21 H 1.08995 * 110.35632 * 185.43540 * 20 18 17 22 22 C 1.54943 * 110.31222 * 307.58380 * 20 18 17 23 23 C 1.55298 * 100.94428 * 155.35670 * 22 20 18 24 24 C 1.54388 * 102.25402 * 325.86892 * 23 22 20 25 25 O 1.43240 * 107.58878 * 21.35290 * 24 23 22 26 26 C 1.47154 * 120.98411 * 90.00182 * 14 11 10 27 27 C 1.52996 * 117.49748 * 230.45739 * 9 7 2 28 28 C 1.52997 * 117.49610 * 299.11614 * 9 7 2 29 29 H 0.97001 * 120.00031 * 5.02640 * 1 2 3 30 30 H 1.09005 * 109.47285 * 305.20089 * 10 9 7 31 31 H 1.09001 * 109.47318 * 185.19998 * 10 9 7 32 32 H 1.08996 * 109.67863 * 350.23665 * 15 14 11 33 33 H 1.08994 * 109.67769 * 110.75550 * 15 14 11 34 34 H 1.09000 * 109.51058 * 67.62014 * 16 15 14 35 35 H 1.08994 * 109.51266 * 187.77342 * 16 15 14 36 36 H 1.08996 * 111.12477 * 273.27608 * 22 20 18 37 37 H 1.09004 * 111.12502 * 37.43718 * 22 20 18 38 38 H 1.09006 * 110.85315 * 207.67904 * 23 22 20 39 39 H 1.09004 * 111.02703 * 84.13593 * 23 22 20 40 40 H 1.09007 * 109.82774 * 261.84479 * 24 23 22 41 41 H 1.09000 * 109.83367 * 140.87149 * 24 23 22 42 42 H 1.09000 * 109.68028 * 9.75996 * 26 14 11 43 43 H 1.09000 * 109.71139 * 249.22849 * 26 14 11 44 44 H 1.08998 * 117.49546 * 215.00191 * 27 9 7 45 45 H 1.09000 * 117.49746 * 0.02562 * 27 9 7 46 46 H 1.08997 * 117.50050 * 359.97184 * 28 9 7 47 47 H 1.08999 * 117.50098 * 144.97565 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0771 -1.1983 -0.1270 9 6 1.2614 -2.4933 0.1754 10 6 0.6668 -3.0914 -1.1011 11 16 2.0070 -3.5625 -2.2293 12 8 2.8242 -4.5654 -1.6415 13 8 2.5804 -2.4100 -2.8311 14 7 1.2431 -4.3377 -3.4774 15 6 1.0175 -5.7914 -3.4415 16 6 1.5208 -6.3915 -4.7594 17 8 0.9322 -5.6844 -5.8537 18 6 1.2847 -4.3003 -5.9136 19 1 2.3690 -4.2020 -5.9683 20 6 0.6509 -3.6648 -7.1527 21 1 0.9881 -2.6344 -7.2648 22 6 1.0028 -4.4865 -8.4183 23 6 -0.1801 -4.1110 -9.3519 24 6 -1.3476 -3.9529 -8.3542 25 8 -0.7818 -3.7133 -7.0603 26 6 0.7694 -3.5932 -4.6550 27 6 1.7804 -3.4659 1.2362 28 6 0.4826 -2.6909 1.4774 29 1 -0.4850 0.8368 -0.0736 30 1 0.0274 -2.3530 -1.5848 31 1 0.0774 -3.9730 -0.8490 32 1 1.5658 -6.2274 -2.6065 33 1 -0.0472 -5.9949 -3.3278 34 1 2.6060 -6.3016 -4.8093 35 1 1.2391 -7.4431 -4.8116 36 1 1.9546 -4.1667 -8.8423 37 1 1.0098 -5.5551 -8.2035 38 1 -0.3830 -4.9122 -10.0626 39 1 0.0149 -3.1733 -9.8724 40 1 -1.9429 -4.8658 -8.3341 41 1 -1.9724 -3.1090 -8.6467 42 1 1.1533 -2.5735 -4.6235 43 1 -0.3204 -3.5748 -4.6644 44 1 1.6984 -4.5320 1.0246 45 1 2.6591 -3.1659 1.8071 46 1 0.5082 -1.8815 2.2070 47 1 -0.4534 -3.2468 1.4246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590749614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:18 Heat of formation + Delta-G solvation = -152.769911 kcal Electronic energy + Delta-G solvation = -30175.600990 eV Core-core repulsion = 26064.759194 eV Total energy + Delta-G solvation = -4110.841796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.99768 -39.43394 -38.59832 -38.07921 -36.87782 -35.79302 -34.11297 -33.37795 -32.89961 -29.94245 -29.76416 -27.76225 -27.40325 -25.19508 -23.28440 -23.01154 -22.40360 -21.59212 -21.38704 -19.84430 -18.78154 -18.38249 -18.15292 -17.43111 -17.06813 -16.82641 -16.70275 -16.55319 -16.17718 -15.86545 -15.64449 -15.43034 -15.21475 -14.95280 -14.83251 -14.17289 -13.85817 -13.78340 -13.71838 -13.42185 -13.18236 -13.11413 -12.95323 -12.87911 -12.78313 -12.61442 -12.45059 -12.41113 -12.26545 -12.20387 -12.08353 -11.95400 -11.64670 -11.63474 -11.34335 -11.19867 -10.90132 -10.57754 -10.43283 -10.11118 -9.67670 -8.21408 -6.36871 -0.62256 1.37164 1.39330 1.48153 1.78978 2.37804 2.65901 2.86701 2.92095 3.04607 3.23857 3.36152 3.60132 3.62960 3.69730 3.90853 4.01604 4.05059 4.12579 4.16110 4.23970 4.27912 4.34248 4.38974 4.43926 4.48116 4.56083 4.59155 4.67390 4.80161 4.80646 4.88693 4.92741 4.94246 4.94723 5.00405 5.08274 5.09966 5.17989 5.36202 5.42427 5.51923 5.55964 5.68885 6.07166 6.18899 6.19529 6.69502 7.35726 8.85688 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.003617 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.666900 B = 7739.283452 C = 8795.827016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.042 3.958 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.551 4.551 11 S 2.621 3.379 12 O -0.984 6.984 13 O -0.987 6.987 14 N -1.008 6.008 15 C 0.072 3.928 16 C 0.051 3.949 17 O -0.370 6.370 18 C 0.086 3.914 19 H 0.076 0.924 20 C 0.082 3.918 21 H 0.094 0.906 22 C -0.142 4.142 23 C -0.147 4.147 24 C 0.043 3.957 25 O -0.396 6.396 26 C 0.089 3.911 27 C -0.194 4.194 28 C -0.139 4.139 29 H 0.266 0.734 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 -12.641 -17.057 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.161 4.161 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.007 3.993 10 C -0.684 4.684 11 S 2.721 3.279 12 O -0.974 6.974 13 O -0.977 6.977 14 N -0.846 5.846 15 C -0.053 4.053 16 C -0.027 4.027 17 O -0.289 6.289 18 C 0.026 3.974 19 H 0.094 0.906 20 C 0.024 3.976 21 H 0.111 0.889 22 C -0.180 4.180 23 C -0.184 4.184 24 C -0.033 4.033 25 O -0.316 6.316 26 C -0.037 4.037 27 C -0.231 4.231 28 C -0.178 4.178 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.805 -12.443 -16.885 21.052 hybrid contribution -0.163 1.409 0.555 1.523 sum -1.968 -11.034 -16.330 19.806 Atomic orbital electron populations 1.70030 1.06753 1.27863 1.48281 1.25552 0.95611 1.01715 0.93244 0.85875 0.79373 0.80040 0.78565 1.20161 1.19761 1.19198 1.20705 0.93150 0.90623 1.52866 0.93242 1.18422 1.00402 0.94432 0.86033 1.29921 1.16818 1.09116 1.12551 1.04524 0.76512 0.72732 0.74179 1.93442 1.65914 1.59293 1.78795 1.93463 1.76231 1.52428 1.75572 1.57912 1.77465 1.16686 1.32566 1.22420 1.03431 0.78330 1.01118 1.23090 0.97494 0.97588 0.84566 1.87931 1.72606 1.20198 1.48137 1.22544 0.98439 0.82746 0.93654 0.90580 1.23146 0.81558 0.99107 0.93759 0.88882 1.23208 1.00001 1.01418 0.93337 1.23102 0.93601 1.03679 0.98053 1.23275 0.96520 1.01275 0.82226 1.88435 1.19021 1.93480 1.30656 1.22105 1.00877 0.95978 0.84713 1.23245 0.98082 0.96918 1.04836 1.22511 0.93867 1.00908 1.00557 0.92516 0.86480 0.85288 0.87682 0.89163 0.92739 0.84434 0.88457 0.89712 0.88454 0.89532 0.91211 0.90883 0.89422 0.89846 0.88194 0.89783 0.91468 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.11 12.98 21.45 0.28 -49.83 16 2 C 0.04 2.32 5.38 84.65 0.46 2.77 16 3 Si 0.94 44.36 29.55 68.60 2.03 46.39 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.13 8.18 25.60 0.21 -29.92 16 8 H 0.05 2.87 7.83 -2.91 -0.02 2.85 16 9 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 10 C -0.55 -23.63 6.03 71.98 0.43 -23.20 16 11 S 2.62 108.21 5.21 -56.49 -0.29 107.92 16 12 O -0.98 -42.20 16.62 -127.65 -2.12 -44.33 16 13 O -0.99 -48.21 16.28 -127.65 -2.08 -50.29 16 14 N -1.01 -32.15 3.27 -511.61 -1.67 -33.83 16 15 C 0.07 1.76 6.67 86.35 0.58 2.34 16 16 C 0.05 1.04 6.99 72.08 0.50 1.55 16 17 O -0.37 -8.82 9.21 -144.68 -1.33 -10.16 16 18 C 0.09 2.17 2.76 30.69 0.08 2.25 16 19 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 20 C 0.08 1.77 3.34 31.26 0.10 1.88 16 21 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 22 C -0.14 -2.21 6.51 32.05 0.21 -2.01 16 23 C -0.15 -1.85 7.02 31.85 0.22 -1.62 16 24 C 0.04 0.75 7.79 72.45 0.56 1.31 16 25 O -0.40 -9.74 10.12 -144.68 -1.46 -11.20 16 26 C 0.09 2.71 5.89 86.35 0.51 3.22 16 27 C -0.19 -8.37 9.96 30.62 0.30 -8.07 16 28 C -0.14 -6.34 9.49 30.62 0.29 -6.05 16 29 H 0.27 14.14 8.32 -92.71 -0.77 13.37 16 30 H 0.12 5.40 8.14 -2.39 -0.02 5.39 16 31 H 0.13 4.54 8.09 -2.39 -0.02 4.52 16 32 H 0.11 2.52 6.88 -2.39 -0.02 2.51 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.45 7.12 -2.38 -0.02 1.43 16 38 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 2.93 6.88 -2.39 -0.02 2.91 16 43 H 0.08 2.53 7.42 -2.39 -0.02 2.51 16 44 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 45 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 46 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 47 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -71.42 386.55 -1.31 -72.73 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.95 Total: 27.75 kcal Atomic # 6 Polarization: -59.56 SS G_CDS: 4.40 Total: -55.16 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.40 Total: -83.66 kcal Atomic # 8 Polarization: -108.97 SS G_CDS: -7.00 Total: -115.97 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 108.21 SS G_CDS: -0.29 Total: 107.92 kcal Total: -71.42 -1.31 -72.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590749614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.039 kcal (2) G-P(sol) polarization free energy of solvation -71.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds