Wall clock time and date at job start Wed Apr 1 2020 03:23:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86797 * 119.99969 * 2 1
4 4 H 1.48500 * 109.47216 * 179.97438 * 3 2 1
5 5 H 1.48497 * 109.46951 * 299.99850 * 3 2 1
6 6 H 1.48501 * 109.47475 * 59.99675 * 3 2 1
7 7 C 1.37880 * 120.00018 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99724 * 172.99834 * 7 2 1
9 9 C 1.50695 * 120.00140 * 353.00767 * 7 2 1
10 10 C 1.53000 * 115.55229 * 84.78478 * 9 7 2
11 11 S 1.81396 * 109.47261 * 39.91282 * 10 9 7
12 12 O 1.42095 * 110.54292 * 62.31488 * 11 10 9
13 13 O 1.42103 * 110.54396 * 285.56085 * 11 10 9
14 14 N 1.65603 * 104.44943 * 173.93773 * 11 10 9
15 15 C 1.47156 * 120.97975 * 89.99872 * 14 11 10
16 16 C 1.53303 * 108.38076 * 129.47830 * 15 14 11
17 17 O 1.42956 * 109.22206 * 52.29924 * 16 15 14
18 18 C 1.42958 * 114.17106 * 297.41663 * 17 16 15
19 19 H 1.08997 * 109.51594 * 302.60965 * 18 17 16
20 20 C 1.53000 * 109.51312 * 182.50377 * 18 17 16
21 21 H 1.08994 * 110.27573 * 299.39984 * 20 18 17
22 22 C 1.54944 * 110.39104 * 61.55328 * 20 18 17
23 23 C 1.55315 * 100.94087 * 155.39952 * 22 20 18
24 24 C 1.54380 * 102.25376 * 325.86465 * 23 22 20
25 25 O 1.43246 * 107.58640 * 21.35741 * 24 23 22
26 26 C 1.47161 * 120.94262 * 269.97636 * 14 11 10
27 27 C 1.53003 * 117.51849 * 230.48332 * 9 7 2
28 28 C 1.52999 * 117.49600 * 299.11228 * 9 7 2
29 29 H 0.96996 * 120.00403 * 5.01934 * 1 2 3
30 30 H 1.09006 * 109.46869 * 279.91475 * 10 9 7
31 31 H 1.08996 * 109.47265 * 159.91957 * 10 9 7
32 32 H 1.08998 * 109.68458 * 9.75439 * 15 14 11
33 33 H 1.08996 * 109.71098 * 249.21752 * 15 14 11
34 34 H 1.09003 * 109.51184 * 292.37355 * 16 15 14
35 35 H 1.08999 * 109.51015 * 172.22480 * 16 15 14
36 36 H 1.09001 * 111.12192 * 273.31347 * 22 20 18
37 37 H 1.09001 * 111.12990 * 37.48446 * 22 20 18
38 38 H 1.08996 * 110.84423 * 207.67100 * 23 22 20
39 39 H 1.09002 * 111.01824 * 84.13483 * 23 22 20
40 40 H 1.08993 * 109.82941 * 261.84737 * 24 23 22
41 41 H 1.08999 * 109.83220 * 140.86552 * 24 23 22
42 42 H 1.09005 * 109.64403 * 110.77902 * 26 14 11
43 43 H 1.09000 * 109.72752 * 350.22211 * 26 14 11
44 44 H 1.08999 * 117.50106 * 214.97083 * 27 9 7
45 45 H 1.08995 * 117.49634 * 359.97438 * 27 9 7
46 46 H 1.08994 * 117.50342 * 359.97425 * 28 9 7
47 47 H 1.09009 * 117.49708 * 145.00047 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8903 2.3965 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0785 -1.1976 -0.1135
9 6 1.2595 -2.4942 0.1600
10 6 0.6800 -3.0849 -1.1270
11 16 1.8647 -2.8606 -2.4822
12 8 3.0719 -3.5589 -2.2100
13 8 1.8825 -1.5055 -2.9098
14 7 1.1962 -3.6817 -3.7555
15 6 0.2839 -3.0102 -4.6948
16 6 0.7671 -3.2911 -6.1223
17 8 0.9313 -4.7006 -6.2948
18 6 1.9208 -5.2832 -5.4432
19 1 2.8789 -4.7904 -5.6081
20 6 2.0524 -6.7746 -5.7585
21 1 1.1035 -7.2823 -5.5856
22 6 2.5123 -6.9781 -7.2240
23 6 3.1801 -8.3773 -7.1318
24 6 3.7887 -8.3571 -5.7132
25 8 3.0870 -7.3645 -4.9553
26 6 1.4980 -5.1044 -3.9806
27 6 1.7653 -3.4733 1.2214
28 6 0.4656 -2.6996 1.4516
29 1 -0.4850 0.8368 -0.0735
30 1 -0.2528 -2.5770 -1.3720
31 1 0.4881 -4.1483 -0.9844
32 1 0.2913 -1.9361 -4.5093
33 1 -0.7267 -3.3979 -4.5663
34 1 1.7208 -2.7903 -6.2890
35 1 0.0308 -2.9203 -6.8354
36 1 1.6608 -6.9933 -7.9044
37 1 3.2346 -6.2168 -7.5185
38 1 3.9589 -8.4859 -7.8866
39 1 2.4389 -9.1712 -7.2247
40 1 4.8466 -8.1007 -5.7684
41 1 3.6676 -9.3339 -5.2449
42 1 0.6100 -5.7037 -3.7793
43 1 2.3092 -5.4169 -3.3231
44 1 1.6853 -4.5381 1.0029
45 1 2.6374 -3.1772 1.8043
46 1 0.4824 -1.8946 2.1862
47 1 -0.4697 -3.2556 1.3845
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000590749615.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:23:22
Heat of formation + Delta-G solvation = -130.131966 kcal
Electronic energy + Delta-G solvation = -30198.617394 eV
Core-core repulsion = 26088.757253 eV
Total energy + Delta-G solvation = -4109.860141 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.08949 -38.66761 -36.71227 -36.18681 -35.00561 -34.56493 -32.44987 -32.19118
-32.04644 -28.92309 -28.16560 -26.54749 -25.42147 -24.27294 -22.08286 -21.73584
-21.18864 -20.86980 -19.51506 -18.28924 -17.39066 -17.14307 -16.44528 -16.27278
-16.03353 -15.47367 -15.22684 -15.07381 -14.87100 -14.61977 -14.31631 -13.96056
-13.88069 -13.67256 -13.50910 -13.09830 -13.00883 -12.19160 -12.12660 -11.95643
-11.80586 -11.62793 -11.51420 -11.46700 -11.39091 -11.11667 -11.05249 -10.98163
-10.92175 -10.80227 -10.50545 -10.46472 -10.32831 -10.09970 -10.04893 -9.70851
-9.66750 -8.95409 -8.62950 -8.52952 -8.07580 -6.15829 -4.30252 1.13055
3.08993 3.30863 3.39447 3.41070 3.45229 4.08106 4.25342 4.39951
4.45730 4.63301 4.73464 4.81818 4.91220 4.92861 4.94807 5.00968
5.13411 5.14666 5.20668 5.25812 5.37224 5.43586 5.45991 5.51268
5.55883 5.60070 5.66863 5.69393 5.81001 5.84194 5.90018 5.97466
6.01760 6.25017 6.33656 6.39084 6.63219 6.71219 6.78704 6.82275
6.97629 7.08257 7.19480 7.40425 7.79073 8.19534 8.78843 9.46717
10.91864
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.018457 B = 0.003404 C = 0.003161
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.701283 B = 8224.605608 C = 8856.738984
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.097 3.903
3 Si 0.893 3.107
4 H -0.268 1.268
5 H -0.277 1.277
6 H -0.282 1.282
7 C -0.542 4.542
8 H 0.069 0.931
9 C 0.049 3.951
10 C -0.558 4.558
11 S 2.621 3.379
12 O -0.968 6.968
13 O -0.939 6.939
14 N -1.018 6.018
15 C 0.082 3.918
16 C 0.055 3.945
17 O -0.375 6.375
18 C 0.084 3.916
19 H 0.071 0.929
20 C 0.091 3.909
21 H 0.082 0.918
22 C -0.142 4.142
23 C -0.158 4.158
24 C 0.051 3.949
25 O -0.371 6.371
26 C 0.094 3.906
27 C -0.204 4.204
28 C -0.144 4.144
29 H 0.264 0.736
30 H 0.127 0.873
31 H 0.095 0.905
32 H 0.107 0.893
33 H 0.072 0.928
34 H 0.057 0.943
35 H 0.106 0.894
36 H 0.088 0.912
37 H 0.079 0.921
38 H 0.081 0.919
39 H 0.077 0.923
40 H 0.070 0.930
41 H 0.070 0.930
42 H 0.070 0.930
43 H 0.109 0.891
44 H 0.069 0.931
45 H 0.085 0.915
46 H 0.085 0.915
47 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.194 -14.103 -14.363 20.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.501 5.501
2 C -0.110 4.110
3 Si 0.719 3.281
4 H -0.192 1.192
5 H -0.203 1.203
6 H -0.208 1.208
7 C -0.580 4.580
8 H 0.087 0.913
9 C 0.047 3.953
10 C -0.690 4.690
11 S 2.720 3.280
12 O -0.959 6.959
13 O -0.930 6.930
14 N -0.854 5.854
15 C -0.044 4.044
16 C -0.023 4.023
17 O -0.294 6.294
18 C 0.024 3.976
19 H 0.089 0.911
20 C 0.032 3.968
21 H 0.100 0.900
22 C -0.180 4.180
23 C -0.196 4.196
24 C -0.026 4.026
25 O -0.290 6.290
26 C -0.032 4.032
27 C -0.241 4.241
28 C -0.183 4.183
29 H 0.074 0.926
30 H 0.145 0.855
31 H 0.114 0.886
32 H 0.125 0.875
33 H 0.090 0.910
34 H 0.076 0.924
35 H 0.124 0.876
36 H 0.107 0.893
37 H 0.098 0.902
38 H 0.100 0.900
39 H 0.095 0.905
40 H 0.089 0.911
41 H 0.088 0.912
42 H 0.088 0.912
43 H 0.127 0.873
44 H 0.088 0.912
45 H 0.103 0.897
46 H 0.104 0.896
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 0.402 -13.565 -14.275 19.697
hybrid contribution -0.323 0.688 0.248 0.799
sum 0.079 -12.877 -14.028 19.042
Atomic orbital electron populations
1.69962 1.06185 1.27354 1.46598 1.24903 0.94728 0.99297 0.92105
0.86509 0.80780 0.83130 0.77644 1.19203 1.20295 1.20832 1.20640
0.93696 0.88785 1.54839 0.91255 1.18190 0.98786 0.94033 0.84262
1.29999 1.16472 1.06279 1.16293 1.04811 0.75674 0.73435 0.74094
1.93472 1.42360 1.74929 1.85147 1.93512 1.86333 1.33356 1.79759
1.58462 1.62926 1.20003 1.44018 1.22066 0.93363 0.99536 0.89464
1.22930 1.01601 0.81238 0.96493 1.87789 1.58968 1.22140 1.60534
1.22314 0.92261 0.92830 0.90153 0.91106 1.22719 0.92209 0.91839
0.89994 0.90023 1.23203 1.01400 0.96697 0.96704 1.23156 1.00925
0.97961 0.97508 1.23153 0.96520 0.92111 0.90794 1.88447 1.48473
1.54507 1.37612 1.21979 1.02119 0.81731 0.97388 1.23127 0.98676
0.95619 1.06712 1.22531 0.92425 1.01103 1.02243 0.92604 0.85523
0.88647 0.87471 0.90972 0.92424 0.87600 0.89349 0.90217 0.90011
0.90472 0.91130 0.91182 0.91195 0.87309 0.91227 0.89664 0.89628
0.91634
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.08 12.96 55.43 0.72 -23.36 16
2 C 0.10 2.69 5.39 -17.82 -0.10 2.59 16
3 Si 0.89 21.96 29.55 -169.99 -5.02 16.94 16
4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16
5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
7 C -0.54 -15.08 6.89 -34.44 -0.24 -15.32 16
8 H 0.07 1.99 7.82 -52.48 -0.41 1.58 16
9 C 0.05 1.23 1.64 -155.66 -0.26 0.97 16
10 C -0.56 -12.10 6.29 37.16 0.23 -11.86 16
11 S 2.62 57.08 4.65 -107.50 -0.50 56.58 16
12 O -0.97 -23.08 16.61 -57.54 -0.96 -24.04 16
13 O -0.94 -23.31 15.75 -57.54 -0.91 -24.21 16
14 N -1.02 -17.17 3.27 -113.05 -0.37 -17.54 16
15 C 0.08 1.16 6.67 -3.53 -0.02 1.14 16
16 C 0.06 0.67 6.99 37.31 0.26 0.93 16
17 O -0.38 -4.76 10.10 -35.23 -0.36 -5.11 16
18 C 0.08 1.12 2.56 -26.58 -0.07 1.05 16
19 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
20 C 0.09 1.01 3.18 -25.71 -0.08 0.93 16
21 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
22 C -0.14 -1.25 6.31 -24.48 -0.15 -1.40 16
23 C -0.16 -1.12 7.02 -24.78 -0.17 -1.29 16
24 C 0.05 0.45 7.79 37.88 0.30 0.75 16
25 O -0.37 -4.63 10.71 -35.23 -0.38 -5.01 16
26 C 0.09 1.41 5.75 -3.53 -0.02 1.39 16
27 C -0.20 -4.53 9.88 -26.73 -0.26 -4.80 16
28 C -0.14 -3.34 9.50 -26.73 -0.25 -3.59 16
29 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16
30 H 0.13 2.76 8.14 -51.92 -0.42 2.34 16
31 H 0.09 1.76 7.95 -51.93 -0.41 1.34 16
32 H 0.11 1.62 6.88 -51.93 -0.36 1.26 16
33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16
36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.08 0.72 8.06 -51.93 -0.42 0.31 16
38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
43 H 0.11 1.78 6.78 -51.93 -0.35 1.43 16
44 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16
45 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16
46 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16
47 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16
LS Contribution 386.79 15.07 5.83 5.83
Total: -1.00 -33.32 386.79 -10.63 -43.94
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -7.85 Total: 4.50 kcal
Atomic # 6 Polarization: -27.67 SS G_CDS: -0.84 Total: -28.51 kcal
Atomic # 7 Polarization: -41.25 SS G_CDS: 0.35 Total: -40.90 kcal
Atomic # 8 Polarization: -55.78 SS G_CDS: -2.60 Total: -58.37 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal
Atomic # 16 Polarization: 57.08 SS G_CDS: -0.50 Total: 56.58 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -33.32 -10.63 -43.94 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590749615.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -86.189 kcal
(2) G-P(sol) polarization free energy of solvation -33.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.132 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds