Wall clock time and date at job start Wed Apr 1 2020 04:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00449 * 2 1 4 4 H 1.08997 * 109.46960 * 32.50790 * 3 2 1 5 5 C 1.52998 * 109.47311 * 152.50526 * 3 2 1 6 6 S 1.81398 * 109.47237 * 300.00291 * 5 3 2 7 7 O 1.42096 * 110.54518 * 68.37394 * 6 5 3 8 8 O 1.42095 * 110.54314 * 291.62006 * 6 5 3 9 9 N 1.65601 * 104.44931 * 179.97438 * 6 5 3 10 10 C 1.46501 * 119.99914 * 89.99997 * 9 6 5 11 11 C 1.50704 * 109.47106 * 94.99747 * 10 9 6 12 12 H 1.08004 * 120.00003 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00091 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99888 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00108 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47190 * 90.00138 * 15 13 11 17 17 H 1.48498 * 109.47025 * 210.00376 * 15 13 11 18 18 H 1.48500 * 109.47096 * 330.00133 * 15 13 11 19 19 C 1.46501 * 120.00527 * 269.99773 * 9 6 5 20 20 C 1.50696 * 109.47383 * 265.00356 * 19 9 6 21 21 C 1.34517 * 125.79229 * 89.71043 * 20 19 9 22 22 C 1.41373 * 106.84354 * 179.88899 * 21 20 19 23 23 C 1.34518 * 106.84279 * 0.37592 * 22 21 20 24 24 O 1.34305 * 125.78982 * 270.02101 * 20 19 9 25 25 C 1.52993 * 109.47331 * 272.50916 * 3 2 1 26 26 C 1.52997 * 109.47386 * 176.87634 * 25 3 2 27 27 C 1.53006 * 109.47044 * 296.87555 * 25 3 2 28 28 H 1.08999 * 109.47211 * 55.27642 * 1 2 3 29 29 H 1.08996 * 109.47375 * 175.28280 * 1 2 3 30 30 H 1.09004 * 109.46929 * 295.27567 * 1 2 3 31 31 H 1.08998 * 109.47388 * 179.97438 * 5 3 2 32 32 H 1.09005 * 109.47193 * 60.00163 * 5 3 2 33 33 H 1.08997 * 109.47394 * 214.99953 * 10 9 6 34 34 H 1.09001 * 109.47266 * 335.00170 * 10 9 6 35 35 H 0.96998 * 119.99988 * 179.97438 * 14 13 11 36 36 H 1.09005 * 109.46435 * 25.00184 * 19 9 6 37 37 H 1.08995 * 109.47302 * 144.99897 * 19 9 6 38 38 H 1.08004 * 126.57266 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.58087 * 180.16247 * 22 21 20 40 40 H 1.08000 * 125.79329 * 179.74859 * 23 22 21 41 41 H 1.09005 * 109.47228 * 56.87299 * 25 3 2 42 42 H 1.08994 * 109.47362 * 66.45351 * 26 25 3 43 43 H 1.09003 * 109.47273 * 186.45448 * 26 25 3 44 44 H 1.08998 * 109.47203 * 306.44950 * 26 25 3 45 45 H 1.08996 * 109.47185 * 179.97438 * 27 25 3 46 46 H 1.09005 * 109.46899 * 299.99945 * 27 25 3 47 47 H 1.08998 * 109.47249 * 60.00082 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3664 1.9898 0.5523 5 6 3.3866 1.2508 0.6659 6 16 3.2090 0.6679 2.3745 7 8 2.8147 -0.6970 2.3974 8 8 2.5360 1.6382 3.1649 9 7 4.7543 0.6560 2.9698 10 6 5.2954 1.8483 3.6268 11 6 5.1044 1.7310 5.1171 12 1 4.6281 0.8555 5.5332 13 6 5.5388 2.7407 5.9494 14 7 6.1194 3.8065 5.4427 15 14 5.3028 2.5950 7.7967 16 1 6.4873 1.9293 8.3961 17 1 5.1462 3.9498 8.3841 18 1 4.0872 1.7898 8.0784 19 6 5.5803 -0.5469 2.8395 20 6 5.4732 -1.3687 4.0981 21 6 4.5640 -2.3317 4.3339 22 6 4.8296 -2.8380 5.6269 23 6 5.8799 -2.1485 6.1073 24 8 6.2656 -1.2599 5.1770 25 6 2.1600 1.7970 -1.4410 26 6 2.7099 3.2247 -1.4383 27 6 3.1255 0.8801 -2.1949 28 1 -0.3633 0.5854 -0.8446 29 1 -0.3634 -1.0241 -0.0845 30 1 -0.3633 0.4388 0.9293 31 1 3.8302 2.2464 0.6655 32 1 4.0306 0.5663 0.1137 33 1 6.3584 1.9360 3.4025 34 1 4.7730 2.7328 3.2622 35 1 6.4246 4.5171 6.0282 36 1 5.2331 -1.1358 1.9904 37 1 6.6194 -0.2587 2.6810 38 1 3.7826 -2.6572 3.6631 39 1 4.2902 -3.6248 6.1333 40 1 6.3356 -2.2858 7.0768 41 1 1.1873 1.7831 -1.9327 42 1 3.7288 3.2210 -1.0514 43 1 2.7090 3.6164 -2.4556 44 1 2.0835 3.8541 -0.8062 45 1 3.2319 1.2301 -3.2217 46 1 4.0983 0.8939 -1.7033 47 1 2.7338 -0.1371 -2.1969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592011663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:36 Heat of formation + Delta-G solvation = -98.309784 kcal Electronic energy + Delta-G solvation = -30467.061218 eV Core-core repulsion = 26358.580990 eV Total energy + Delta-G solvation = -4108.480228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80831 -39.07041 -36.44207 -35.90022 -35.27090 -35.12989 -32.60278 -32.15941 -30.35518 -29.83115 -27.38351 -27.07799 -26.52360 -24.86440 -24.30781 -22.35461 -21.00778 -19.99782 -19.76660 -18.30359 -17.36618 -16.87573 -16.77667 -16.53000 -16.23408 -15.39140 -15.37378 -15.00753 -14.73212 -14.46236 -14.33558 -14.07012 -13.73014 -13.49738 -13.11234 -13.07109 -12.75564 -12.38286 -12.20604 -12.12506 -12.08565 -11.95083 -11.77175 -11.55622 -11.45995 -11.41958 -11.31225 -11.24408 -11.02906 -11.00687 -10.74124 -10.63056 -10.53209 -10.35374 -9.94243 -9.76840 -9.55976 -9.22044 -8.38263 -8.22148 -7.78450 -5.99323 -3.99355 0.80147 2.39108 3.17351 3.36220 3.41706 3.45161 3.49705 3.56207 3.71025 4.32739 4.49767 4.52546 4.61754 4.72482 4.82306 5.04697 5.10596 5.21688 5.24111 5.29144 5.34247 5.39675 5.42029 5.48451 5.51484 5.60880 5.64690 5.69093 5.76007 5.78556 5.83049 5.89965 5.91678 6.15538 6.19714 6.23612 6.41707 6.61834 6.74248 6.97538 7.14864 7.17582 7.35473 7.54122 7.87953 7.99824 8.27103 9.02545 9.64479 11.10209 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.004458 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.870894 B = 6279.531965 C = 7503.583748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.376 6.376 3 C 0.104 3.896 4 H 0.074 0.926 5 C -0.647 4.647 6 S 2.606 3.394 7 O -0.951 6.951 8 O -0.938 6.938 9 N -0.984 5.984 10 C 0.253 3.747 11 C -0.508 4.508 12 H 0.060 0.940 13 C 0.062 3.938 14 N -0.901 5.901 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.212 3.788 20 C -0.008 4.008 21 C -0.204 4.204 22 C -0.225 4.225 23 C -0.046 4.046 24 O -0.152 6.152 25 C -0.108 4.108 26 C -0.153 4.153 27 C -0.146 4.146 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.192 0.808 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -7.054 -13.840 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.045 3.955 4 H 0.092 0.908 5 C -0.772 4.772 6 S 2.697 3.303 7 O -0.941 6.941 8 O -0.928 6.928 9 N -0.822 5.822 10 C 0.132 3.868 11 C -0.547 4.547 12 H 0.079 0.921 13 C -0.139 4.139 14 N -0.541 5.541 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C 0.085 3.915 20 C -0.061 4.061 21 C -0.224 4.224 22 C -0.245 4.245 23 C -0.115 4.115 24 O -0.046 6.046 25 C -0.127 4.127 26 C -0.211 4.211 27 C -0.203 4.203 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.170 0.830 39 H 0.157 0.843 40 H 0.209 0.791 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.200 -7.034 -13.329 15.943 hybrid contribution -0.072 0.406 0.769 0.873 sum -5.272 -6.628 -12.560 15.148 Atomic orbital electron populations 1.22881 0.80667 1.03274 1.00267 1.88028 1.20063 1.26435 1.94998 1.21745 0.91681 0.85612 0.96484 0.90827 1.31001 1.04321 1.14239 1.27667 1.05238 0.73945 0.74918 0.76189 1.93526 1.80932 1.33168 1.86444 1.93629 1.72023 1.63185 1.63994 1.57760 1.33305 1.20433 1.70675 1.19158 0.95080 0.79764 0.92821 1.21383 1.37915 1.04264 0.91174 0.92139 1.24855 0.95196 0.95096 0.98792 1.69907 1.40829 1.08180 1.35225 0.86582 0.78596 0.77276 0.85586 1.20665 1.21226 1.19814 1.19391 0.97644 0.84346 0.90073 1.22807 0.94057 0.98909 0.90287 1.21718 1.02076 1.00469 0.98164 1.21725 1.00809 1.04748 0.97176 1.23891 0.99777 0.92899 0.94965 1.84115 1.49394 1.48706 1.22370 1.21487 1.00204 0.95947 0.95099 1.21912 1.01908 0.95180 1.02073 1.21831 0.99344 0.99852 0.99306 0.93800 0.89032 0.93612 0.83826 0.84383 0.94489 0.94298 0.92901 0.88428 0.89166 0.83014 0.84348 0.79081 0.90751 0.91781 0.92251 0.92250 0.92891 0.92146 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.79 101.05 1.09 1.36 16 2 O -0.38 -5.12 8.85 -41.98 -0.37 -5.49 16 3 C 0.10 1.33 1.94 -26.74 -0.05 1.28 16 4 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 5 C -0.65 -8.81 5.19 37.16 0.19 -8.61 16 6 S 2.61 49.56 5.11 -107.50 -0.55 49.01 16 7 O -0.95 -18.87 15.09 -61.89 -0.93 -19.80 16 8 O -0.94 -22.04 16.99 -57.54 -0.98 -23.02 16 9 N -0.98 -19.79 2.72 -116.95 -0.32 -20.11 16 10 C 0.25 6.19 5.04 -5.19 -0.03 6.16 16 11 C -0.51 -14.34 8.90 -34.44 -0.31 -14.65 16 12 H 0.06 1.78 7.26 -52.48 -0.38 1.40 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 15 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.27 -6.99 7.11 56.52 0.40 -6.58 16 19 C 0.21 3.69 5.81 -5.20 -0.03 3.66 16 20 C -0.01 -0.15 6.00 -35.63 -0.21 -0.37 16 21 C -0.20 -3.89 10.29 -39.71 -0.41 -4.30 16 22 C -0.23 -3.94 10.91 -39.70 -0.43 -4.37 16 23 C -0.05 -0.82 12.09 29.42 0.36 -0.46 16 24 O -0.15 -3.16 10.51 5.70 0.06 -3.10 16 25 C -0.11 -1.09 2.87 -90.62 -0.26 -1.35 16 26 C -0.15 -1.45 8.74 37.16 0.32 -1.13 16 27 C -0.15 -1.40 8.64 37.16 0.32 -1.08 16 28 H 0.04 0.37 7.54 -51.93 -0.39 -0.03 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.77 6.66 -51.93 -0.35 1.43 16 32 H 0.14 1.58 6.37 -51.92 -0.33 1.25 16 33 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 34 H 0.04 0.99 7.61 -51.93 -0.40 0.60 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.10 1.35 7.61 -51.93 -0.39 0.96 16 37 H 0.09 1.41 8.00 -51.93 -0.42 0.99 16 38 H 0.15 2.81 7.36 -52.48 -0.39 2.43 16 39 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.19 2.65 8.06 -52.49 -0.42 2.22 16 41 H 0.07 0.68 7.56 -51.93 -0.39 0.28 16 42 H 0.06 0.62 6.85 -51.93 -0.36 0.26 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.57 6.37 -51.93 -0.33 0.24 16 47 H 0.06 0.64 7.77 -51.93 -0.40 0.24 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -35.73 394.00 -8.42 -44.15 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.44 Total: 2.74 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 0.46 Total: -22.19 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.42 Total: -45.74 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -2.22 Total: -51.42 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 49.56 SS G_CDS: -0.55 Total: 49.01 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.73 -8.42 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592011663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.157 kcal (2) G-P(sol) polarization free energy of solvation -35.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds