Wall clock time and date at job start Wed Apr 1 2020 03:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00470 * 2 1 4 4 H 1.48495 * 109.47174 * 240.00235 * 3 2 1 5 5 H 1.48502 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47226 * 120.00126 * 3 2 1 7 7 C 1.37879 * 119.99445 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99944 * 173.00183 * 7 2 1 9 9 C 1.50697 * 120.00425 * 353.00794 * 7 2 1 10 10 C 1.53006 * 115.54933 * 84.79022 * 9 7 2 11 11 S 1.81396 * 109.46855 * 39.92418 * 10 9 7 12 12 O 1.42106 * 110.54371 * 62.23897 * 11 10 9 13 13 O 1.42098 * 110.54373 * 285.48195 * 11 10 9 14 14 N 1.65608 * 104.44737 * 173.85783 * 11 10 9 15 15 C 1.46505 * 119.99557 * 65.00285 * 14 11 10 16 16 C 1.52999 * 109.46612 * 165.00098 * 15 14 11 17 17 H 1.08995 * 109.47932 * 54.99788 * 16 15 14 18 18 C 1.53004 * 109.46925 * 174.99913 * 16 15 14 19 19 C 1.52996 * 109.47092 * 179.97438 * 18 16 15 20 20 C 1.52992 * 109.47539 * 299.99894 * 19 18 16 21 21 H 1.09004 * 109.47406 * 300.00115 * 20 19 18 22 22 C 1.50695 * 109.47641 * 180.02562 * 20 19 18 23 23 O 1.20825 * 119.99876 * 359.97438 * 22 20 19 24 24 O 1.34232 * 120.00523 * 180.02562 * 22 20 19 25 25 C 1.53001 * 109.47041 * 59.99643 * 20 19 18 26 26 C 1.52992 * 109.47537 * 300.00329 * 25 20 19 27 27 C 1.52997 * 117.52065 * 230.49926 * 9 7 2 28 28 C 1.52997 * 60.00178 * 107.47737 * 27 9 7 29 29 H 0.96997 * 119.99260 * 5.02716 * 1 2 3 30 30 H 1.09000 * 109.46995 * 279.92065 * 10 9 7 31 31 H 1.08996 * 109.46695 * 159.92281 * 10 9 7 32 32 H 0.96994 * 120.00305 * 245.00025 * 14 11 10 33 33 H 1.08998 * 109.47113 * 44.99902 * 15 14 11 34 34 H 1.08996 * 109.46714 * 284.99705 * 15 14 11 35 35 H 1.09004 * 109.47322 * 59.99647 * 18 16 15 36 36 H 1.08998 * 109.46853 * 299.99527 * 18 16 15 37 37 H 1.09005 * 109.47541 * 60.00014 * 19 18 16 38 38 H 1.09010 * 109.47035 * 179.97438 * 19 18 16 39 39 H 0.96698 * 117.00294 * 180.02562 * 24 22 20 40 40 H 1.09004 * 109.46969 * 60.00430 * 25 20 19 41 41 H 1.09007 * 109.47228 * 180.02562 * 25 20 19 42 42 H 1.08997 * 109.47268 * 179.97438 * 26 25 20 43 43 H 1.09004 * 109.47073 * 300.00037 * 26 25 20 44 44 H 1.09004 * 117.49866 * 214.96921 * 27 9 7 45 45 H 1.09001 * 117.49888 * 359.97438 * 27 9 7 46 46 H 1.08999 * 117.49503 * 252.50829 * 28 27 9 47 47 H 1.09006 * 117.49788 * 107.48989 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0785 -1.1978 -0.1134 9 6 1.2594 -2.4943 0.1600 10 6 0.6800 -3.0850 -1.1271 11 16 1.8650 -2.8609 -2.4821 12 8 3.0728 -3.5580 -2.2087 13 8 1.8819 -1.5063 -2.9108 14 7 1.1977 -3.6839 -3.7549 15 6 -0.0683 -3.2312 -4.3368 16 6 -0.2747 -3.9044 -5.6951 17 1 -0.2125 -4.9862 -5.5778 18 6 -1.6520 -3.5295 -6.2461 19 6 -1.8581 -4.2021 -7.6047 20 6 -0.7746 -3.7311 -8.5767 21 1 -0.8369 -2.6492 -8.6938 22 6 -0.9780 -4.3931 -9.9151 23 8 -1.8953 -5.1632 -10.0750 24 8 -0.1396 -4.1282 -10.9294 25 6 0.6027 -4.1059 -8.0258 26 6 0.8089 -3.4332 -6.6672 27 6 1.7649 -3.4732 1.2216 28 6 0.4651 -2.6995 1.4515 29 1 -0.4849 0.8368 -0.0736 30 1 -0.2527 -2.5770 -1.3723 31 1 0.4880 -4.1483 -0.9844 32 1 1.6451 -4.4655 -4.1151 33 1 -0.0418 -2.1494 -4.4676 34 1 -0.8895 -3.4967 -3.6712 35 1 -1.7142 -2.4476 -6.3635 36 1 -2.4239 -3.8648 -5.5534 37 1 -1.7958 -5.2841 -7.4877 38 1 -2.8396 -3.9354 -7.9970 39 1 -0.3107 -4.5765 -11.7689 40 1 0.6651 -5.1878 -7.9087 41 1 1.3747 -3.7699 -8.7181 42 1 1.7899 -3.7006 -6.2746 43 1 0.7465 -2.3513 -6.7843 44 1 1.6848 -4.5381 1.0031 45 1 2.6369 -3.1771 1.8047 46 1 0.4820 -1.8943 2.1860 47 1 -0.4701 -3.2554 1.3843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593255773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:26 Heat of formation + Delta-G solvation = -194.395155 kcal Electronic energy + Delta-G solvation = -29039.587126 eV Core-core repulsion = 24926.940323 eV Total energy + Delta-G solvation = -4112.646802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.54810 -39.51747 -38.50615 -37.79295 -37.13141 -36.62929 -36.00395 -34.07361 -32.22981 -31.60335 -29.82675 -27.49100 -27.09855 -23.95233 -23.63347 -22.94186 -21.68020 -21.44272 -20.77426 -20.03085 -18.98910 -18.42874 -18.18388 -17.69320 -17.11631 -16.88498 -16.73642 -16.58150 -15.84179 -15.67899 -15.36170 -15.30471 -14.89550 -14.83157 -14.59202 -13.90631 -13.84542 -13.71905 -13.57248 -13.24524 -13.05045 -13.02256 -12.88571 -12.79424 -12.76640 -12.67718 -12.54444 -12.40935 -12.13776 -12.05988 -12.02297 -11.86022 -11.70422 -11.53677 -11.38484 -11.14470 -11.03016 -10.84376 -10.50074 -10.30972 -9.84760 -8.20668 -6.37795 -0.35831 1.20282 1.38290 1.41923 1.47932 2.15826 2.24522 2.41661 3.08711 3.12154 3.37989 3.58341 3.67094 3.73172 3.74184 4.02345 4.06860 4.18724 4.27341 4.38301 4.44800 4.51809 4.57047 4.59288 4.60141 4.63083 4.66540 4.77844 4.87993 4.91668 5.00213 5.01208 5.08753 5.15293 5.19051 5.22645 5.27934 5.31243 5.43108 5.45625 5.57199 5.62856 5.64384 5.71018 6.23533 6.28866 6.70851 7.00641 7.39648 8.86125 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018233 B = 0.002622 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.347801 B =10674.659528 C =11057.076604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.061 3.939 3 Si 0.925 3.075 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.559 4.559 8 H 0.047 0.953 9 C 0.015 3.985 10 C -0.556 4.556 11 S 2.635 3.365 12 O -1.007 7.007 13 O -0.988 6.988 14 N -1.117 6.117 15 C 0.111 3.889 16 C -0.088 4.088 17 H 0.093 0.907 18 C -0.111 4.111 19 C -0.097 4.097 20 C -0.082 4.082 21 H 0.122 0.878 22 C 0.488 3.512 23 O -0.551 6.551 24 O -0.513 6.513 25 C -0.102 4.102 26 C -0.120 4.120 27 C -0.192 4.192 28 C -0.142 4.142 29 H 0.267 0.733 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.421 0.579 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.425 0.575 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 -10.150 -17.350 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.144 4.144 3 Si 0.750 3.250 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.596 4.596 8 H 0.065 0.935 9 C 0.013 3.987 10 C -0.689 4.689 11 S 2.732 3.268 12 O -0.998 6.998 13 O -0.977 6.977 14 N -0.878 5.878 15 C -0.015 4.015 16 C -0.107 4.107 17 H 0.111 0.889 18 C -0.150 4.150 19 C -0.135 4.135 20 C -0.101 4.101 21 H 0.140 0.860 22 C 0.332 3.668 23 O -0.442 6.442 24 O -0.327 6.327 25 C -0.139 4.139 26 C -0.157 4.157 27 C -0.229 4.229 28 C -0.181 4.181 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.256 0.744 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.287 0.713 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.770 -9.391 -16.951 19.957 hybrid contribution -0.070 0.279 -0.347 0.451 sum -4.840 -9.112 -17.298 20.141 Atomic orbital electron populations 1.69972 1.06553 1.27987 1.47138 1.25395 0.95499 1.01292 0.92227 0.86119 0.79541 0.80502 0.78835 1.20394 1.19558 1.19139 1.20709 0.92975 0.90887 1.55064 0.93518 1.18322 1.00112 0.93929 0.86300 1.29860 1.15945 1.08443 1.14652 1.03911 0.74956 0.72988 0.74928 1.93433 1.44963 1.75304 1.86086 1.93469 1.86792 1.37041 1.80409 1.55519 1.36047 1.45887 1.50371 1.21557 0.84507 0.99500 0.95964 1.21385 0.95843 1.01262 0.92252 0.88886 1.21556 0.96013 1.01482 0.95902 1.21373 0.97265 1.01054 0.93760 1.21208 0.98848 1.02490 0.87505 0.86039 1.23810 0.77819 0.78188 0.86972 1.90710 1.33166 1.36108 1.84206 1.84527 1.55072 1.68404 1.24657 1.21471 0.94140 1.01411 0.96909 1.21641 0.99021 1.00920 0.94129 1.23209 0.97895 0.96894 1.04925 1.22475 0.93811 1.00952 1.00884 0.92397 0.85697 0.84719 0.74358 0.91694 0.90262 0.90871 0.89782 0.91326 0.91042 0.71311 0.90989 0.89990 0.91398 0.91514 0.88079 0.90322 0.91841 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.24 12.96 21.45 0.28 -47.96 16 2 C 0.06 3.36 5.39 84.65 0.46 3.82 16 3 Si 0.92 44.52 29.55 68.60 2.03 46.54 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.56 -30.84 6.89 25.60 0.18 -30.67 16 8 H 0.05 2.70 7.82 -2.91 -0.02 2.67 16 9 C 0.02 0.73 1.64 -52.93 -0.09 0.64 16 10 C -0.56 -21.93 6.18 71.98 0.45 -21.49 16 11 S 2.64 106.29 4.63 -56.49 -0.26 106.03 16 12 O -1.01 -45.54 18.08 -127.65 -2.31 -47.85 16 13 O -0.99 -48.47 16.63 -127.65 -2.12 -50.59 16 14 N -1.12 -30.19 5.41 -187.49 -1.02 -31.21 16 15 C 0.11 2.52 5.52 86.38 0.48 2.99 16 16 C -0.09 -1.42 2.22 -10.79 -0.02 -1.45 16 17 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 18 C -0.11 -1.55 5.20 30.59 0.16 -1.39 16 19 C -0.10 -1.37 4.49 30.59 0.14 -1.23 16 20 C -0.08 -1.12 2.63 -11.54 -0.03 -1.15 16 21 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 22 C 0.49 7.84 7.63 71.23 0.54 8.38 16 23 O -0.55 -12.38 16.74 21.97 0.37 -12.01 16 24 O -0.51 -5.92 13.33 -51.43 -0.69 -6.61 16 25 C -0.10 -1.37 5.14 30.59 0.16 -1.22 16 26 C -0.12 -2.00 5.09 30.59 0.16 -1.84 16 27 C -0.19 -7.98 9.88 30.59 0.30 -7.68 16 28 C -0.14 -6.26 9.50 30.59 0.29 -5.97 16 29 H 0.27 13.94 8.32 -92.71 -0.77 13.17 16 30 H 0.12 4.96 8.14 -2.39 -0.02 4.94 16 31 H 0.13 4.15 7.95 -2.39 -0.02 4.13 16 32 H 0.42 9.20 8.33 -96.75 -0.81 8.40 16 33 H 0.06 1.73 7.69 -2.39 -0.02 1.71 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.04 8.10 -2.38 -0.02 1.02 16 38 H 0.07 1.05 8.10 -2.38 -0.02 1.03 16 39 H 0.43 1.51 9.10 -74.06 -0.67 0.84 16 40 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.08 1.05 8.12 -2.38 -0.02 1.03 16 42 H 0.07 1.24 7.53 -2.39 -0.02 1.22 16 43 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.10 3.52 8.08 -2.39 -0.02 3.50 16 45 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 47 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 Total: -1.00 -75.54 394.75 -1.06 -76.61 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.50 Total: 25.28 kcal Atomic # 6 Polarization: -61.40 SS G_CDS: 3.16 Total: -58.24 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -0.74 Total: -79.17 kcal Atomic # 8 Polarization: -112.31 SS G_CDS: -4.75 Total: -117.06 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 106.29 SS G_CDS: -0.26 Total: 106.03 kcal Total: -75.54 -1.06 -76.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593255773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.790 kcal (2) G-P(sol) polarization free energy of solvation -75.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds