Wall clock time and date at job start Wed Apr 1 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00118 * 2 1 4 4 H 1.48493 * 109.47324 * 239.99813 * 3 2 1 5 5 H 1.48505 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47110 * 119.99394 * 3 2 1 7 7 C 1.38812 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99926 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00028 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46751 * 180.02562 * 10 9 7 12 12 C 1.35349 * 126.75294 * 95.29903 * 11 10 9 13 13 N 1.35311 * 106.17862 * 180.12137 * 12 11 10 14 14 C 1.46497 * 125.87051 * 179.90481 * 13 12 11 15 15 H 1.08996 * 110.43156 * 203.62803 * 14 13 12 16 16 C 1.54628 * 110.48821 * 80.94379 * 14 13 12 17 17 C 1.54476 * 101.76724 * 216.52522 * 16 14 13 18 18 N 1.46768 * 105.47356 * 25.41305 * 17 16 14 19 19 C 1.40044 * 124.34890 * 163.24777 * 18 17 16 20 20 C 1.38801 * 120.08120 * 269.72873 * 19 18 17 21 21 C 1.38136 * 119.95824 * 179.97438 * 20 19 18 22 22 C 1.38289 * 120.11069 * 0.02562 * 21 20 19 23 23 C 1.38267 * 120.15268 * 0.02562 * 22 21 20 24 24 C 1.38305 * 120.04696 * 359.70181 * 23 22 21 25 25 F 1.35100 * 120.05734 * 180.29507 * 24 23 22 26 26 C 1.34424 * 111.29731 * 342.98580 * 18 17 16 27 27 O 1.21295 * 124.93712 * 180.42535 * 26 18 17 28 28 N 1.28720 * 108.25725 * 359.63937 * 13 12 11 29 29 N 1.28634 * 110.18289 * 0.22853 * 28 13 12 30 30 H 0.96996 * 120.00091 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99656 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.46849 * 60.00053 * 10 9 7 33 33 H 1.08998 * 109.46890 * 300.00027 * 10 9 7 34 34 H 1.07999 * 126.90850 * 0.02562 * 12 11 10 35 35 H 1.09008 * 110.96597 * 334.64427 * 16 14 13 36 36 H 1.08999 * 110.97047 * 98.36544 * 16 14 13 37 37 H 1.09003 * 110.24203 * 266.41490 * 17 16 14 38 38 H 1.08999 * 110.24703 * 144.41138 * 17 16 14 39 39 H 1.07998 * 120.02287 * 359.94986 * 20 19 18 40 40 H 1.08005 * 119.95065 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.92470 * 179.97438 * 22 21 20 42 42 H 1.08006 * 119.97546 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6290 -5.4826 -1.0802 13 7 -0.2299 -6.4153 -0.6076 14 6 -0.9684 -7.3896 -1.4146 15 1 -1.8614 -7.7229 -0.8858 16 6 -0.0654 -8.5934 -1.7700 17 6 -0.5354 -8.9276 -3.2031 18 7 -1.0806 -7.6745 -3.7385 19 6 -1.3086 -7.4293 -5.0983 20 6 -0.3108 -6.8639 -5.8802 21 6 -0.5383 -6.6236 -7.2213 22 6 -1.7589 -6.9449 -7.7864 23 6 -2.7564 -7.5073 -7.0116 24 6 -2.5337 -7.7559 -5.6695 25 9 -3.5062 -8.3109 -4.9136 26 6 -1.3383 -6.7947 -2.7554 27 8 -1.8004 -5.6853 -2.9196 28 7 -0.2822 -6.3028 0.6736 29 7 0.4869 -5.3498 1.0673 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.8998 -5.3140 -2.1120 35 1 0.9866 -8.3080 -1.7610 36 1 -0.2463 -9.4296 -1.0946 37 1 -1.3091 -9.6949 -3.1770 38 1 0.3075 -9.2612 -3.8083 39 1 0.6427 -6.6117 -5.4402 40 1 0.2381 -6.1833 -7.8295 41 1 -1.9336 -6.7553 -8.8352 42 1 -3.7088 -7.7567 -7.4558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603219618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:39 Heat of formation + Delta-G solvation = 88.950637 kcal Electronic energy + Delta-G solvation = -29439.756706 eV Core-core repulsion = 25145.077945 eV Total energy + Delta-G solvation = -4294.678761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.33476 -43.11302 -41.23975 -39.13095 -37.05266 -35.31526 -34.43563 -32.34577 -31.68445 -31.11983 -29.88774 -29.34379 -27.98320 -25.81080 -24.00428 -23.32762 -23.26876 -22.77951 -21.64813 -20.79318 -20.24765 -18.40116 -17.76653 -17.59760 -17.16729 -16.97271 -16.59346 -15.99857 -15.92681 -15.56627 -14.98233 -14.68994 -14.65079 -14.44254 -14.36505 -14.18467 -13.70906 -13.55424 -13.41382 -13.11253 -12.90176 -12.78199 -12.57279 -12.44934 -12.08942 -11.87468 -11.75269 -11.26483 -10.85053 -10.76361 -10.69794 -10.42760 -10.06790 -9.84994 -9.66792 -9.58357 -9.51238 -9.19355 -8.83528 -8.79003 -6.84449 -5.65566 -2.95896 0.49320 0.66610 1.59314 1.78256 2.12579 2.54589 2.92422 2.97928 3.51150 3.53186 3.54841 3.56748 3.69889 3.77207 4.08786 4.21706 4.24662 4.43782 4.60003 4.67977 4.72172 4.74389 4.78553 4.81214 5.00647 5.11314 5.21691 5.32009 5.47387 5.50017 5.54083 5.67558 5.68149 5.80409 5.83201 5.92795 6.23669 6.24676 6.42292 6.42629 6.68107 6.70034 6.81283 7.52417 7.76689 8.50950 8.82043 9.62359 10.18732 10.54642 11.56932 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011664 B = 0.002841 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.887596 B = 9852.662310 C =11395.078246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.726 5.726 10 C 0.234 3.766 11 C -0.001 4.001 12 C -0.032 4.032 13 N -0.290 5.290 14 C 0.122 3.878 15 H 0.151 0.849 16 C -0.137 4.137 17 C 0.106 3.894 18 N -0.575 5.575 19 C 0.107 3.893 20 C -0.077 4.077 21 C -0.120 4.120 22 C -0.081 4.081 23 C -0.149 4.149 24 C 0.109 3.891 25 F -0.132 7.132 26 C 0.515 3.485 27 O -0.473 6.473 28 N -0.090 5.090 29 N -0.246 5.246 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.181 0.819 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -26.534 -17.701 31.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.105 3.895 11 C -0.138 4.138 12 C -0.182 4.182 13 N -0.084 5.084 14 C 0.015 3.985 15 H 0.169 0.831 16 C -0.176 4.176 17 C -0.015 4.015 18 N -0.308 5.308 19 C 0.016 3.984 20 C -0.096 4.096 21 C -0.139 4.139 22 C -0.099 4.099 23 C -0.168 4.168 24 C 0.088 3.912 25 F -0.110 7.110 26 C 0.299 3.701 27 O -0.342 6.342 28 N -0.068 5.068 29 N -0.114 5.114 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.199 0.801 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.825 -26.332 -16.477 31.190 hybrid contribution 0.121 1.136 -0.974 1.501 sum -2.704 -25.196 -17.450 30.768 Atomic orbital electron populations 1.69684 1.05164 1.25730 1.57233 1.24773 0.95501 0.97704 1.02906 0.86234 0.78444 0.83475 0.77802 1.21271 1.21743 1.21206 1.19173 0.91009 0.83832 1.43250 0.90958 1.42312 1.06062 0.99194 1.89491 1.18942 0.89976 0.81413 0.99204 1.22433 1.02708 1.00507 0.88190 1.23250 0.98131 0.94922 1.01850 1.46765 1.30316 1.24715 1.06579 1.22018 0.97976 0.88330 0.90216 0.83137 1.23134 1.00894 0.97425 0.96143 1.22298 0.99800 0.85570 0.93870 1.45269 1.65110 1.16973 1.03417 1.17309 0.93393 1.04615 0.83050 1.21315 0.98741 0.95847 0.93742 1.21197 0.97965 1.00209 0.94507 1.21173 0.92388 0.95976 1.00394 1.21146 1.01546 1.02457 0.91675 1.18014 0.85410 0.98066 0.89708 1.91514 1.61083 1.82538 1.75890 1.20559 0.78626 0.84994 0.85947 1.90916 1.41002 1.18019 1.84268 1.78291 1.19636 1.17261 0.91625 1.75085 1.06500 1.03728 1.26083 0.93456 0.77982 0.94230 0.94620 0.80142 0.88213 0.86833 0.89583 0.88781 0.84370 0.84357 0.84352 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.88 13.06 55.49 0.72 -29.16 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.73 -20.05 5.59 -61.08 -0.34 -20.39 16 10 C 0.23 5.17 6.82 -5.19 -0.04 5.13 16 11 C 0.00 -0.02 6.61 -82.78 -0.55 -0.57 16 12 C -0.03 -0.54 10.48 -17.05 -0.18 -0.72 16 13 N -0.29 -4.45 3.29 -54.78 -0.18 -4.63 16 14 C 0.12 1.30 3.96 -67.95 -0.27 1.03 16 15 H 0.15 1.37 8.14 -51.93 -0.42 0.95 16 16 C -0.14 -0.79 6.88 -25.10 -0.17 -0.96 16 17 C 0.11 0.53 7.28 -3.12 -0.02 0.51 16 18 N -0.57 -5.37 2.78 -112.20 -0.31 -5.68 16 19 C 0.11 1.03 5.39 -83.60 -0.45 0.58 16 20 C -0.08 -0.62 9.97 -39.41 -0.39 -1.01 16 21 C -0.12 -0.76 10.04 -39.60 -0.40 -1.16 16 22 C -0.08 -0.47 10.04 -39.55 -0.40 -0.87 16 23 C -0.15 -1.08 10.02 -39.55 -0.40 -1.47 16 24 C 0.11 1.05 7.31 -39.25 -0.29 0.76 16 25 F -0.13 -1.42 17.08 2.25 0.04 -1.39 16 26 C 0.51 6.62 6.75 -10.86 -0.07 6.55 16 27 O -0.47 -8.64 17.41 5.54 0.10 -8.54 16 28 N -0.09 -1.65 13.17 60.35 0.79 -0.86 16 29 N -0.25 -5.23 12.41 33.29 0.41 -4.82 16 30 H 0.26 7.91 8.31 -40.82 -0.34 7.58 16 31 H 0.39 11.67 7.66 -40.82 -0.31 11.35 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.18 2.70 7.92 -52.49 -0.42 2.29 16 35 H 0.10 0.61 8.09 -51.92 -0.42 0.19 16 36 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -39.68 373.60 -6.95 -46.63 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.92 Total: 4.97 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -3.87 Total: 0.08 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 1.10 Total: -65.54 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.10 Total: -8.54 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.68 -6.95 -46.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603219618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.580 kcal (2) G-P(sol) polarization free energy of solvation -39.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds