Wall clock time and date at job start Wed Apr 1 2020 03:14:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86796 * 120.00118 * 2 1
4 4 H 1.48493 * 109.47324 * 239.99813 * 3 2 1
5 5 H 1.48505 * 109.46995 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.47110 * 119.99394 * 3 2 1
7 7 C 1.38812 * 119.99894 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99926 * 180.02562 * 7 2 1
9 9 N 1.36939 * 120.00210 * 0.02562 * 7 2 1
10 10 C 1.46505 * 120.00028 * 179.97438 * 9 7 2
11 11 C 1.50700 * 109.46751 * 180.02562 * 10 9 7
12 12 C 1.35349 * 126.75294 * 95.29903 * 11 10 9
13 13 N 1.35311 * 106.17862 * 180.12137 * 12 11 10
14 14 C 1.46497 * 125.87051 * 179.90481 * 13 12 11
15 15 H 1.08996 * 110.43156 * 203.62803 * 14 13 12
16 16 C 1.54628 * 110.48821 * 80.94379 * 14 13 12
17 17 C 1.54476 * 101.76724 * 216.52522 * 16 14 13
18 18 N 1.46768 * 105.47356 * 25.41305 * 17 16 14
19 19 C 1.40044 * 124.34890 * 163.24777 * 18 17 16
20 20 C 1.38801 * 120.08120 * 269.72873 * 19 18 17
21 21 C 1.38136 * 119.95824 * 179.97438 * 20 19 18
22 22 C 1.38289 * 120.11069 * 0.02562 * 21 20 19
23 23 C 1.38267 * 120.15268 * 0.02562 * 22 21 20
24 24 C 1.38305 * 120.04696 * 359.70181 * 23 22 21
25 25 F 1.35100 * 120.05734 * 180.29507 * 24 23 22
26 26 C 1.34424 * 111.29731 * 342.98580 * 18 17 16
27 27 O 1.21295 * 124.93712 * 180.42535 * 26 18 17
28 28 N 1.28720 * 108.25725 * 359.63937 * 13 12 11
29 29 N 1.28634 * 110.18289 * 0.22853 * 28 13 12
30 30 H 0.96996 * 120.00091 * 0.02562 * 1 2 3
31 31 H 0.97002 * 119.99656 * 0.02562 * 9 7 2
32 32 H 1.08992 * 109.46849 * 60.00053 * 10 9 7
33 33 H 1.08998 * 109.46890 * 300.00027 * 10 9 7
34 34 H 1.07999 * 126.90850 * 0.02562 * 12 11 10
35 35 H 1.09008 * 110.96597 * 334.64427 * 16 14 13
36 36 H 1.08999 * 110.97047 * 98.36544 * 16 14 13
37 37 H 1.09003 * 110.24203 * 266.41490 * 17 16 14
38 38 H 1.08999 * 110.24703 * 144.41138 * 17 16 14
39 39 H 1.07998 * 120.02287 * 359.94986 * 20 19 18
40 40 H 1.08005 * 119.95065 * 179.97438 * 21 20 19
41 41 H 1.07998 * 119.92470 * 179.97438 * 22 21 20
42 42 H 1.08006 * 119.97546 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6964 -1.2124
5 1 1.2852 2.7464 0.0006
6 1 3.1038 1.6964 1.2126
7 6 2.0102 -1.2022 0.0005
8 1 3.0903 -1.2022 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6569 0.0005
11 6 1.0787 -4.8022 -0.0001
12 6 0.6290 -5.4826 -1.0802
13 7 -0.2299 -6.4153 -0.6076
14 6 -0.9684 -7.3896 -1.4146
15 1 -1.8614 -7.7229 -0.8858
16 6 -0.0654 -8.5934 -1.7700
17 6 -0.5354 -8.9276 -3.2031
18 7 -1.0806 -7.6745 -3.7385
19 6 -1.3086 -7.4293 -5.0983
20 6 -0.3108 -6.8639 -5.8802
21 6 -0.5383 -6.6236 -7.2213
22 6 -1.7589 -6.9449 -7.7864
23 6 -2.7564 -7.5073 -7.0116
24 6 -2.5337 -7.7559 -5.6695
25 9 -3.5062 -8.3109 -4.9136
26 6 -1.3383 -6.7947 -2.7554
27 8 -1.8004 -5.6853 -2.9196
28 7 -0.2822 -6.3028 0.6736
29 7 0.4869 -5.3498 1.0673
30 1 -0.4850 0.8400 -0.0004
31 1 0.3555 -2.3881 -0.0002
32 1 2.6847 -3.7145 0.8905
33 1 2.6847 -3.7145 -0.8894
34 1 0.8998 -5.3140 -2.1120
35 1 0.9866 -8.3080 -1.7610
36 1 -0.2463 -9.4296 -1.0946
37 1 -1.3091 -9.6949 -3.1770
38 1 0.3075 -9.2612 -3.8083
39 1 0.6427 -6.6117 -5.4402
40 1 0.2381 -6.1833 -7.8295
41 1 -1.9336 -6.7553 -8.8352
42 1 -3.7088 -7.7567 -7.4558
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000603219618.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:14:39
Heat of formation + Delta-G solvation = 88.950637 kcal
Electronic energy + Delta-G solvation = -29439.756706 eV
Core-core repulsion = 25145.077945 eV
Total energy + Delta-G solvation = -4294.678761 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.134 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-49.33476 -43.11302 -41.23975 -39.13095 -37.05266 -35.31526 -34.43563 -32.34577
-31.68445 -31.11983 -29.88774 -29.34379 -27.98320 -25.81080 -24.00428 -23.32762
-23.26876 -22.77951 -21.64813 -20.79318 -20.24765 -18.40116 -17.76653 -17.59760
-17.16729 -16.97271 -16.59346 -15.99857 -15.92681 -15.56627 -14.98233 -14.68994
-14.65079 -14.44254 -14.36505 -14.18467 -13.70906 -13.55424 -13.41382 -13.11253
-12.90176 -12.78199 -12.57279 -12.44934 -12.08942 -11.87468 -11.75269 -11.26483
-10.85053 -10.76361 -10.69794 -10.42760 -10.06790 -9.84994 -9.66792 -9.58357
-9.51238 -9.19355 -8.83528 -8.79003 -6.84449 -5.65566 -2.95896 0.49320
0.66610 1.59314 1.78256 2.12579 2.54589 2.92422 2.97928 3.51150
3.53186 3.54841 3.56748 3.69889 3.77207 4.08786 4.21706 4.24662
4.43782 4.60003 4.67977 4.72172 4.74389 4.78553 4.81214 5.00647
5.11314 5.21691 5.32009 5.47387 5.50017 5.54083 5.67558 5.68149
5.80409 5.83201 5.92795 6.23669 6.24676 6.42292 6.42629 6.68107
6.70034 6.81283 7.52417 7.76689 8.50950 8.82043 9.62359 10.18732
10.54642 11.56932
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.011664 B = 0.002841 C = 0.002457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2399.887596 B = 9852.662310 C =11395.078246
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.013 4.013
3 Si 0.910 3.090
4 H -0.286 1.286
5 H -0.292 1.292
6 H -0.285 1.285
7 C -0.242 4.242
8 H 0.072 0.928
9 N -0.726 5.726
10 C 0.234 3.766
11 C -0.001 4.001
12 C -0.032 4.032
13 N -0.290 5.290
14 C 0.122 3.878
15 H 0.151 0.849
16 C -0.137 4.137
17 C 0.106 3.894
18 N -0.575 5.575
19 C 0.107 3.893
20 C -0.077 4.077
21 C -0.120 4.120
22 C -0.081 4.081
23 C -0.149 4.149
24 C 0.109 3.891
25 F -0.132 7.132
26 C 0.515 3.485
27 O -0.473 6.473
28 N -0.090 5.090
29 N -0.246 5.246
30 H 0.256 0.744
31 H 0.386 0.614
32 H 0.040 0.960
33 H 0.036 0.964
34 H 0.181 0.819
35 H 0.099 0.901
36 H 0.113 0.887
37 H 0.086 0.914
38 H 0.094 0.906
39 H 0.138 0.862
40 H 0.139 0.861
41 H 0.139 0.861
42 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.012 -26.534 -17.701 31.960
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.209 4.209
3 Si 0.740 3.260
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.212 1.212
7 C -0.373 4.373
8 H 0.090 0.910
9 N -0.371 5.371
10 C 0.105 3.895
11 C -0.138 4.138
12 C -0.182 4.182
13 N -0.084 5.084
14 C 0.015 3.985
15 H 0.169 0.831
16 C -0.176 4.176
17 C -0.015 4.015
18 N -0.308 5.308
19 C 0.016 3.984
20 C -0.096 4.096
21 C -0.139 4.139
22 C -0.099 4.099
23 C -0.168 4.168
24 C 0.088 3.912
25 F -0.110 7.110
26 C 0.299 3.701
27 O -0.342 6.342
28 N -0.068 5.068
29 N -0.114 5.114
30 H 0.065 0.935
31 H 0.220 0.780
32 H 0.058 0.942
33 H 0.054 0.946
34 H 0.199 0.801
35 H 0.118 0.882
36 H 0.132 0.868
37 H 0.104 0.896
38 H 0.112 0.888
39 H 0.156 0.844
40 H 0.156 0.844
41 H 0.156 0.844
42 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -2.825 -26.332 -16.477 31.190
hybrid contribution 0.121 1.136 -0.974 1.501
sum -2.704 -25.196 -17.450 30.768
Atomic orbital electron populations
1.69684 1.05164 1.25730 1.57233 1.24773 0.95501 0.97704 1.02906
0.86234 0.78444 0.83475 0.77802 1.21271 1.21743 1.21206 1.19173
0.91009 0.83832 1.43250 0.90958 1.42312 1.06062 0.99194 1.89491
1.18942 0.89976 0.81413 0.99204 1.22433 1.02708 1.00507 0.88190
1.23250 0.98131 0.94922 1.01850 1.46765 1.30316 1.24715 1.06579
1.22018 0.97976 0.88330 0.90216 0.83137 1.23134 1.00894 0.97425
0.96143 1.22298 0.99800 0.85570 0.93870 1.45269 1.65110 1.16973
1.03417 1.17309 0.93393 1.04615 0.83050 1.21315 0.98741 0.95847
0.93742 1.21197 0.97965 1.00209 0.94507 1.21173 0.92388 0.95976
1.00394 1.21146 1.01546 1.02457 0.91675 1.18014 0.85410 0.98066
0.89708 1.91514 1.61083 1.82538 1.75890 1.20559 0.78626 0.84994
0.85947 1.90916 1.41002 1.18019 1.84268 1.78291 1.19636 1.17261
0.91625 1.75085 1.06500 1.03728 1.26083 0.93456 0.77982 0.94230
0.94620 0.80142 0.88213 0.86833 0.89583 0.88781 0.84370 0.84357
0.84352 0.84040
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.88 13.06 55.49 0.72 -29.16 16
2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16
3 Si 0.91 23.18 29.55 -169.99 -5.02 18.15 16
4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16
6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
7 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16
8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16
9 N -0.73 -20.05 5.59 -61.08 -0.34 -20.39 16
10 C 0.23 5.17 6.82 -5.19 -0.04 5.13 16
11 C 0.00 -0.02 6.61 -82.78 -0.55 -0.57 16
12 C -0.03 -0.54 10.48 -17.05 -0.18 -0.72 16
13 N -0.29 -4.45 3.29 -54.78 -0.18 -4.63 16
14 C 0.12 1.30 3.96 -67.95 -0.27 1.03 16
15 H 0.15 1.37 8.14 -51.93 -0.42 0.95 16
16 C -0.14 -0.79 6.88 -25.10 -0.17 -0.96 16
17 C 0.11 0.53 7.28 -3.12 -0.02 0.51 16
18 N -0.57 -5.37 2.78 -112.20 -0.31 -5.68 16
19 C 0.11 1.03 5.39 -83.60 -0.45 0.58 16
20 C -0.08 -0.62 9.97 -39.41 -0.39 -1.01 16
21 C -0.12 -0.76 10.04 -39.60 -0.40 -1.16 16
22 C -0.08 -0.47 10.04 -39.55 -0.40 -0.87 16
23 C -0.15 -1.08 10.02 -39.55 -0.40 -1.47 16
24 C 0.11 1.05 7.31 -39.25 -0.29 0.76 16
25 F -0.13 -1.42 17.08 2.25 0.04 -1.39 16
26 C 0.51 6.62 6.75 -10.86 -0.07 6.55 16
27 O -0.47 -8.64 17.41 5.54 0.10 -8.54 16
28 N -0.09 -1.65 13.17 60.35 0.79 -0.86 16
29 N -0.25 -5.23 12.41 33.29 0.41 -4.82 16
30 H 0.26 7.91 8.31 -40.82 -0.34 7.58 16
31 H 0.39 11.67 7.66 -40.82 -0.31 11.35 16
32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16
34 H 0.18 2.70 7.92 -52.49 -0.42 2.29 16
35 H 0.10 0.61 8.09 -51.92 -0.42 0.19 16
36 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16
37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16
38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16
39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16
40 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16
41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16
42 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16
LS Contribution 373.60 15.07 5.63 5.63
Total: -1.00 -39.68 373.60 -6.95 -46.63
By element:
Atomic # 1 Polarization: 9.90 SS G_CDS: -4.92 Total: 4.97 kcal
Atomic # 6 Polarization: 3.95 SS G_CDS: -3.87 Total: 0.08 kcal
Atomic # 7 Polarization: -66.64 SS G_CDS: 1.10 Total: -65.54 kcal
Atomic # 8 Polarization: -8.64 SS G_CDS: 0.10 Total: -8.54 kcal
Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal
Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -39.68 -6.95 -46.63 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000603219618.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.580 kcal
(2) G-P(sol) polarization free energy of solvation -39.680 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.951 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds