Wall clock time and date at job start Wed Apr 1 2020 03:14:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86796 * 120.00118 * 2 1
4 4 H 1.48493 * 109.47324 * 239.99813 * 3 2 1
5 5 H 1.48505 * 109.46995 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.47110 * 119.99394 * 3 2 1
7 7 C 1.38812 * 119.99894 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99926 * 180.02562 * 7 2 1
9 9 N 1.36939 * 120.00210 * 0.02562 * 7 2 1
10 10 C 1.46505 * 120.00028 * 179.97438 * 9 7 2
11 11 C 1.50700 * 109.46751 * 180.02562 * 10 9 7
12 12 C 1.35349 * 126.75294 * 95.29903 * 11 10 9
13 13 N 1.35311 * 106.17862 * 180.12137 * 12 11 10
14 14 C 1.46497 * 125.87051 * 179.90481 * 13 12 11
15 15 H 1.08996 * 110.43156 * 203.62803 * 14 13 12
16 16 C 1.54628 * 110.48821 * 80.94379 * 14 13 12
17 17 C 1.54476 * 101.76724 * 216.52522 * 16 14 13
18 18 N 1.46768 * 105.47356 * 25.41305 * 17 16 14
19 19 C 1.40044 * 124.34890 * 163.24777 * 18 17 16
20 20 C 1.38801 * 120.08120 * 269.72873 * 19 18 17
21 21 C 1.38136 * 119.95824 * 179.97438 * 20 19 18
22 22 C 1.38289 * 120.11069 * 0.02562 * 21 20 19
23 23 C 1.38267 * 120.15268 * 0.02562 * 22 21 20
24 24 C 1.38305 * 120.04696 * 359.70181 * 23 22 21
25 25 F 1.35100 * 120.05734 * 180.29507 * 24 23 22
26 26 C 1.34424 * 111.29731 * 342.98580 * 18 17 16
27 27 O 1.21295 * 124.93712 * 180.42535 * 26 18 17
28 28 N 1.28720 * 108.25725 * 359.63937 * 13 12 11
29 29 N 1.28634 * 110.18289 * 0.22853 * 28 13 12
30 30 H 0.96996 * 120.00091 * 0.02562 * 1 2 3
31 31 H 0.97002 * 119.99656 * 0.02562 * 9 7 2
32 32 H 1.08992 * 109.46849 * 60.00053 * 10 9 7
33 33 H 1.08998 * 109.46890 * 300.00027 * 10 9 7
34 34 H 1.07999 * 126.90850 * 0.02562 * 12 11 10
35 35 H 1.09008 * 110.96597 * 334.64427 * 16 14 13
36 36 H 1.08999 * 110.97047 * 98.36544 * 16 14 13
37 37 H 1.09003 * 110.24203 * 266.41490 * 17 16 14
38 38 H 1.08999 * 110.24703 * 144.41138 * 17 16 14
39 39 H 1.07998 * 120.02287 * 359.94986 * 20 19 18
40 40 H 1.08005 * 119.95065 * 179.97438 * 21 20 19
41 41 H 1.07998 * 119.92470 * 179.97438 * 22 21 20
42 42 H 1.08006 * 119.97546 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6964 -1.2124
5 1 1.2852 2.7464 0.0006
6 1 3.1038 1.6964 1.2126
7 6 2.0102 -1.2022 0.0005
8 1 3.0903 -1.2022 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6569 0.0005
11 6 1.0787 -4.8022 -0.0001
12 6 0.6290 -5.4826 -1.0802
13 7 -0.2299 -6.4153 -0.6076
14 6 -0.9684 -7.3896 -1.4146
15 1 -1.8614 -7.7229 -0.8858
16 6 -0.0654 -8.5934 -1.7700
17 6 -0.5354 -8.9276 -3.2031
18 7 -1.0806 -7.6745 -3.7385
19 6 -1.3086 -7.4293 -5.0983
20 6 -0.3108 -6.8639 -5.8802
21 6 -0.5383 -6.6236 -7.2213
22 6 -1.7589 -6.9449 -7.7864
23 6 -2.7564 -7.5073 -7.0116
24 6 -2.5337 -7.7559 -5.6695
25 9 -3.5062 -8.3109 -4.9136
26 6 -1.3383 -6.7947 -2.7554
27 8 -1.8004 -5.6853 -2.9196
28 7 -0.2822 -6.3028 0.6736
29 7 0.4869 -5.3498 1.0673
30 1 -0.4850 0.8400 -0.0004
31 1 0.3555 -2.3881 -0.0002
32 1 2.6847 -3.7145 0.8905
33 1 2.6847 -3.7145 -0.8894
34 1 0.8998 -5.3140 -2.1120
35 1 0.9866 -8.3080 -1.7610
36 1 -0.2463 -9.4296 -1.0946
37 1 -1.3091 -9.6949 -3.1770
38 1 0.3075 -9.2612 -3.8083
39 1 0.6427 -6.6117 -5.4402
40 1 0.2381 -6.1833 -7.8295
41 1 -1.9336 -6.7553 -8.8352
42 1 -3.7088 -7.7567 -7.4558
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000603219618.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:14:38
Heat of formation + Delta-G solvation = 60.683928 kcal
Electronic energy + Delta-G solvation = -29440.982442 eV
Core-core repulsion = 25145.077945 eV
Total energy + Delta-G solvation = -4295.904497 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.134 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-50.06174 -44.47099 -42.09283 -39.76250 -37.99779 -36.93693 -35.82624 -33.83829
-33.00606 -31.70696 -31.68234 -30.03153 -28.84738 -27.68962 -24.90817 -24.69003
-24.12954 -23.86093 -22.73361 -22.18795 -21.15758 -19.42536 -19.12535 -18.58001
-18.28928 -17.92329 -17.38651 -17.22917 -16.71058 -16.61516 -16.18870 -16.10115
-15.83057 -15.48998 -15.28270 -15.09938 -15.00028 -14.86254 -14.44690 -14.33087
-14.10826 -13.70650 -13.46079 -13.33742 -13.06768 -12.93965 -12.74864 -12.65550
-12.63362 -12.29049 -12.15176 -12.03347 -11.90832 -11.67347 -11.03792 -10.95598
-10.34702 -10.27430 -10.09840 -9.79770 -9.04888 -7.93387 -5.25615 -0.09661
0.10320 0.40018 0.63965 1.28331 1.35805 1.48705 1.53590 1.59017
1.59651 2.42578 2.58990 2.72105 3.09089 3.11184 3.26152 3.40243
3.52305 3.60543 3.70510 3.81337 3.97423 4.07916 4.10735 4.18631
4.24678 4.28235 4.30293 4.39452 4.59391 4.73366 4.77382 4.80707
4.92481 5.02221 5.03723 5.09830 5.14928 5.29615 5.35234 5.43221
5.48844 5.52805 5.81203 6.24574 6.63768 7.30613 7.36951 8.01331
8.27926 9.30594
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.011664 B = 0.002841 C = 0.002457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2399.887596 B = 9852.662310 C =11395.078246
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.976 5.976
2 C -0.081 4.081
3 Si 0.984 3.016
4 H -0.270 1.270
5 H -0.298 1.298
6 H -0.275 1.275
7 C -0.247 4.247
8 H 0.088 0.912
9 N -0.742 5.742
10 C 0.236 3.764
11 C -0.027 4.027
12 C -0.016 4.016
13 N -0.273 5.273
14 C 0.109 3.891
15 H 0.166 0.834
16 C -0.120 4.120
17 C 0.104 3.896
18 N -0.563 5.563
19 C 0.082 3.918
20 C -0.089 4.089
21 C -0.117 4.117
22 C -0.076 4.076
23 C -0.152 4.152
24 C 0.080 3.920
25 F -0.146 7.146
26 C 0.508 3.492
27 O -0.543 6.543
28 N -0.094 5.094
29 N -0.286 5.286
30 H 0.250 0.750
31 H 0.368 0.632
32 H 0.038 0.962
33 H 0.061 0.939
34 H 0.200 0.800
35 H 0.102 0.898
36 H 0.147 0.853
37 H 0.107 0.893
38 H 0.122 0.878
39 H 0.144 0.856
40 H 0.164 0.836
41 H 0.171 0.829
42 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.428 -28.354 -19.890 34.637
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.626 5.626
2 C -0.273 4.273
3 Si 0.812 3.188
4 H -0.196 1.196
5 H -0.225 1.225
6 H -0.201 1.201
7 C -0.378 4.378
8 H 0.106 0.894
9 N -0.385 5.385
10 C 0.108 3.892
11 C -0.165 4.165
12 C -0.167 4.167
13 N -0.067 5.067
14 C 0.004 3.996
15 H 0.183 0.817
16 C -0.158 4.158
17 C -0.016 4.016
18 N -0.293 5.293
19 C -0.009 4.009
20 C -0.109 4.109
21 C -0.136 4.136
22 C -0.093 4.093
23 C -0.171 4.171
24 C 0.059 3.941
25 F -0.125 7.125
26 C 0.294 3.706
27 O -0.418 6.418
28 N -0.073 5.073
29 N -0.154 5.154
30 H 0.059 0.941
31 H 0.199 0.801
32 H 0.056 0.944
33 H 0.079 0.921
34 H 0.217 0.783
35 H 0.120 0.880
36 H 0.165 0.835
37 H 0.126 0.874
38 H 0.140 0.860
39 H 0.162 0.838
40 H 0.182 0.818
41 H 0.189 0.811
42 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -1.186 -28.272 -18.681 33.907
hybrid contribution -0.408 1.523 -0.440 1.637
sum -1.594 -26.749 -19.121 32.919
Atomic orbital electron populations
1.69890 1.07151 1.26195 1.59391 1.25747 0.96382 1.01696 1.03431
0.85055 0.76996 0.78221 0.78513 1.19583 1.22468 1.20123 1.19705
0.91888 0.84663 1.41527 0.89383 1.42551 1.05410 1.00883 1.89613
1.19001 0.90231 0.80025 0.99925 1.22241 1.03896 1.01145 0.89249
1.23388 0.97276 0.94225 1.01809 1.47065 1.29130 1.24484 1.06044
1.22590 0.99579 0.88670 0.88753 0.81698 1.23244 0.99774 0.95754
0.97040 1.22669 1.01389 0.84090 0.93430 1.45392 1.63290 1.17493
1.03125 1.17595 0.94139 1.05997 0.83139 1.21505 0.98766 0.95969
0.94615 1.21579 0.98830 0.99136 0.94024 1.21589 0.91586 0.94391
1.01763 1.21463 1.02748 1.01949 0.90901 1.18348 0.85365 0.99613
0.90750 1.91468 1.61640 1.82981 1.76409 1.20924 0.77876 0.84522
0.87284 1.90876 1.44531 1.21010 1.85369 1.78169 1.19290 1.16865
0.92978 1.75019 1.07888 1.05086 1.27379 0.94111 0.80134 0.94390
0.92118 0.78288 0.87967 0.83507 0.87449 0.85965 0.83789 0.81829
0.81147 0.82404
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -64.48 13.06 21.65 0.28 -64.20 16
2 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16
3 Si 0.98 48.03 29.55 68.60 2.03 50.06 16
4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16
5 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16
6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
7 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16
8 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16
9 N -0.74 -41.86 5.59 -347.17 -1.94 -43.80 16
10 C 0.24 10.50 6.82 85.63 0.58 11.09 16
11 C -0.03 -1.13 6.61 41.60 0.28 -0.85 16
12 C -0.02 -0.53 10.48 83.49 0.88 0.35 16
13 N -0.27 -8.29 3.29 -327.23 -1.08 -9.36 16
14 C 0.11 2.20 3.96 44.98 0.18 2.38 16
15 H 0.17 2.82 8.14 -2.39 -0.02 2.80 16
16 C -0.12 -1.01 6.88 31.65 0.22 -0.79 16
17 C 0.10 0.73 7.28 86.83 0.63 1.37 16
18 N -0.56 -9.88 2.78 -627.46 -1.75 -11.63 16
19 C 0.08 1.51 5.39 38.16 0.21 1.71 16
20 C -0.09 -1.31 9.97 22.38 0.22 -1.09 16
21 C -0.12 -1.20 10.04 22.26 0.22 -0.98 16
22 C -0.08 -0.69 10.04 22.29 0.22 -0.46 16
23 C -0.15 -1.97 10.02 22.29 0.22 -1.75 16
24 C 0.08 1.50 7.31 22.48 0.16 1.66 16
25 F -0.15 -3.19 17.08 44.97 0.77 -2.42 16
26 C 0.51 13.05 6.75 87.89 0.59 13.64 16
27 O -0.54 -20.70 17.41 -3.08 -0.05 -20.76 16
28 N -0.09 -3.49 13.17 37.02 0.49 -3.00 16
29 N -0.29 -12.43 12.41 -48.60 -0.60 -13.03 16
30 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16
31 H 0.37 23.10 7.66 -92.71 -0.71 22.39 16
32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16
33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16
34 H 0.20 5.86 7.92 -2.91 -0.02 5.83 16
35 H 0.10 0.91 8.09 -2.38 -0.02 0.89 16
36 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16
37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16
38 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16
39 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16
40 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16
41 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16
42 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16
Total: -1.00 -91.02 373.60 4.43 -86.58
By element:
Atomic # 1 Polarization: 23.06 SS G_CDS: 0.36 Total: 23.43 kcal
Atomic # 6 Polarization: 2.20 SS G_CDS: 5.93 Total: 8.12 kcal
Atomic # 7 Polarization: -140.42 SS G_CDS: -4.60 Total: -145.02 kcal
Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.76 kcal
Atomic # 9 Polarization: -3.19 SS G_CDS: 0.77 Total: -2.42 kcal
Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal
Total: -91.02 4.43 -86.58 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000603219618.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 147.266 kcal
(2) G-P(sol) polarization free energy of solvation -91.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.250 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.582 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.684 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds