Wall clock time and date at job start Wed Apr 1 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86795 * 120.00390 * 2 1 4 4 H 1.48508 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47294 * 300.00034 * 3 2 1 6 6 H 1.48498 * 109.47140 * 60.00397 * 3 2 1 7 7 C 1.38755 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99928 * 180.02562 * 7 2 1 9 9 O 1.34916 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.34318 * 117.00227 * 180.02562 * 9 7 2 11 11 O 1.21209 * 119.99660 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99983 * 180.02562 * 10 9 7 13 13 H 1.08993 * 110.00334 * 40.35054 * 12 10 9 14 14 C 1.54332 * 109.87820 * 279.25704 * 12 10 9 15 15 C 1.55157 * 102.94056 * 218.39102 * 14 12 10 16 16 H 1.08998 * 111.00681 * 153.57557 * 15 14 12 17 17 O 1.42902 * 111.00516 * 277.43182 * 15 14 12 18 18 C 1.54695 * 101.67595 * 35.33535 * 15 14 12 19 19 N 1.47021 * 109.88220 * 161.45346 * 12 10 9 20 20 C 1.34778 * 125.64842 * 298.31445 * 19 12 10 21 21 O 1.21558 * 119.99593 * 3.36567 * 20 19 12 22 22 C 1.47842 * 120.00163 * 183.63486 * 20 19 12 23 23 C 1.39590 * 120.18616 * 153.31688 * 22 20 19 24 24 C 1.37808 * 119.78892 * 179.97438 * 23 22 20 25 25 C 1.38664 * 120.40989 * 359.97213 * 24 23 22 26 26 C 1.38377 * 120.07878 * 0.02777 * 25 24 23 27 27 C 1.38244 * 119.99426 * 359.74386 * 26 25 24 28 28 C 1.51394 * 109.74642 * 179.97438 * 26 25 24 29 29 C 1.54331 * 105.16831 * 17.22739 * 28 26 25 30 30 C 1.51418 * 130.22070 * 180.02562 * 25 24 23 31 31 H 0.97005 * 119.99186 * 0.02562 * 1 2 3 32 32 H 1.08995 * 110.72157 * 336.75636 * 14 12 10 33 33 H 1.09000 * 110.71945 * 100.03071 * 14 12 10 34 34 H 0.96700 * 113.99887 * 180.02562 * 17 15 14 35 35 H 1.08998 * 110.39185 * 204.35649 * 18 15 14 36 36 H 1.09008 * 110.23348 * 82.11749 * 18 15 14 37 37 H 1.08000 * 120.10825 * 359.95210 * 23 22 20 38 38 H 1.08002 * 119.79522 * 180.02562 * 24 23 22 39 39 H 1.07997 * 119.94573 * 180.25111 * 27 26 25 40 40 H 1.08999 * 110.30093 * 136.14975 * 28 26 25 41 41 H 1.08993 * 110.30417 * 258.20602 * 28 26 25 42 42 H 1.09010 * 110.82152 * 91.81574 * 29 28 26 43 43 H 1.09002 * 110.81851 * 215.15492 * 29 28 26 44 44 H 1.09002 * 110.30011 * 281.73030 * 30 25 24 45 45 H 1.09001 * 110.29950 * 43.87349 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6176 0.0000 4 1 3.7086 1.3461 -0.0006 5 1 1.8899 2.3964 -1.2125 6 1 1.8899 2.3963 1.2125 7 6 2.0081 -1.2017 -0.0005 8 1 3.0881 -1.2018 -0.0001 9 8 1.3335 -2.3701 -0.0005 10 6 2.0649 -3.4966 -0.0005 11 8 3.2753 -3.4333 -0.0010 12 6 1.3806 -4.8393 -0.0011 13 1 0.5161 -4.8169 -0.6646 14 6 0.9338 -5.2011 1.4311 15 6 1.2107 -6.7259 1.5066 16 1 1.3908 -7.0399 2.5348 17 8 0.1381 -7.4707 0.9262 18 6 2.4940 -6.8538 0.6524 19 7 2.3216 -5.8799 -0.4408 20 6 2.9225 -5.9371 -1.6458 21 8 2.7489 -5.0462 -2.4544 22 6 3.7879 -7.0864 -1.9865 23 6 3.9607 -7.4642 -3.3191 24 6 4.7697 -8.5364 -3.6274 25 6 5.4135 -9.2418 -2.6220 26 6 5.2463 -8.8722 -1.2990 27 6 4.4408 -7.7953 -0.9788 28 6 6.0482 -9.7941 -0.4052 29 6 7.0621 -10.4839 -1.3422 30 6 6.3398 -10.4367 -2.7050 31 1 -0.4849 0.8402 -0.0004 32 1 1.5301 -4.6639 2.1685 33 1 -0.1278 -4.9948 1.5676 34 1 0.2662 -8.4289 0.9506 35 1 2.5839 -7.8630 0.2507 36 1 3.3709 -6.6028 1.2494 37 1 3.4617 -6.9182 -4.1061 38 1 4.9038 -8.8285 -4.6584 39 1 4.3140 -7.5051 0.0537 40 1 6.5704 -9.2193 0.3597 41 1 5.3954 -10.5337 0.0583 42 1 7.9972 -9.9249 -1.3801 43 1 7.2403 -11.5129 -1.0300 44 1 5.7657 -11.3502 -2.8604 45 1 7.0611 -10.3008 -3.5109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725997236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:56 Heat of formation + Delta-G solvation = -117.464557 kcal Electronic energy + Delta-G solvation = -30557.131150 eV Core-core repulsion = 26312.376358 eV Total energy + Delta-G solvation = -4244.754793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84061 -39.87647 -38.44540 -37.85196 -35.66936 -35.40984 -34.67052 -32.28995 -32.00485 -30.76711 -29.30866 -29.09298 -27.55525 -25.51818 -24.47831 -22.89930 -22.14100 -21.51622 -21.06078 -20.17584 -18.84810 -17.93303 -17.59410 -17.07124 -16.75992 -16.21548 -15.91370 -15.56164 -15.31987 -15.05643 -14.65580 -14.28917 -14.15129 -14.04736 -13.87744 -13.66516 -13.32376 -13.19066 -12.99350 -12.78918 -12.67401 -12.38460 -12.09399 -11.95215 -11.74757 -11.55548 -11.49863 -11.44366 -11.18688 -11.11622 -11.04398 -10.78875 -10.35645 -10.34766 -10.25111 -9.73421 -9.63039 -9.13638 -8.96704 -8.68993 -8.49525 -8.31656 -6.32626 -3.99456 0.83858 1.22002 2.88077 3.01046 3.16198 3.24918 3.32876 3.57577 3.71239 3.96996 4.04162 4.11241 4.24063 4.33182 4.45446 4.61377 4.66262 4.76146 4.81875 4.85261 4.94351 5.04919 5.21432 5.26848 5.32138 5.33949 5.35909 5.45434 5.47250 5.48876 5.54111 5.59270 5.62795 5.77514 5.82944 5.90753 5.96352 6.12292 6.18763 6.26315 6.37442 6.38855 6.75300 6.86263 7.47947 7.48519 7.65339 8.04405 8.41093 8.81063 9.16251 9.94270 10.85540 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.002948 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.467636 B = 9494.413661 C =10436.008107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.376 4.376 8 H 0.094 0.906 9 O -0.212 6.212 10 C 0.396 3.604 11 O -0.543 6.543 12 C 0.160 3.840 13 H 0.103 0.897 14 C -0.109 4.109 15 C 0.089 3.911 16 H 0.086 0.914 17 O -0.551 6.551 18 C 0.064 3.936 19 N -0.588 5.588 20 C 0.576 3.424 21 O -0.514 6.514 22 C -0.115 4.115 23 C -0.063 4.063 24 C -0.115 4.115 25 C -0.081 4.081 26 C -0.109 4.109 27 C -0.087 4.087 28 C -0.081 4.081 29 C -0.121 4.121 30 C -0.084 4.084 31 H 0.268 0.732 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.377 0.623 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.974 -25.270 1.608 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.453 4.453 8 H 0.112 0.888 9 O -0.119 6.119 10 C 0.240 3.760 11 O -0.439 6.439 12 C 0.055 3.945 13 H 0.121 0.879 14 C -0.146 4.146 15 C 0.030 3.970 16 H 0.104 0.896 17 O -0.356 6.356 18 C -0.059 4.059 19 N -0.322 5.322 20 C 0.365 3.635 21 O -0.390 6.390 22 C -0.118 4.118 23 C -0.081 4.081 24 C -0.133 4.133 25 C -0.081 4.081 26 C -0.109 4.109 27 C -0.105 4.105 28 C -0.118 4.118 29 C -0.158 4.158 30 C -0.121 4.121 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.224 0.776 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.813 -23.968 0.980 25.229 hybrid contribution 0.706 0.425 0.021 0.825 sum 8.519 -23.543 1.001 25.057 Atomic orbital electron populations 1.70010 1.05924 1.27408 1.46985 1.25312 0.95817 0.98737 0.96385 0.85633 0.79475 0.80205 0.78051 1.19030 1.20176 1.20211 1.21239 0.92317 0.79798 1.51905 0.88845 1.83865 1.39233 1.13212 1.75592 1.23163 0.86887 0.87105 0.78845 1.90543 1.15523 1.87745 1.50127 1.20828 0.91644 0.84569 0.97484 0.87871 1.22651 1.04548 0.92750 0.94696 1.22975 0.85786 0.92914 0.95367 0.89622 1.86593 1.43577 1.21941 1.83509 1.23396 0.99015 0.93850 0.89624 1.47872 1.45951 1.25069 1.13345 1.17848 0.79419 0.85751 0.80467 1.90852 1.61275 1.38519 1.48307 1.19739 1.00674 0.96903 0.94441 1.21140 0.96413 0.95297 0.95286 1.20562 0.97862 0.95869 0.98965 1.20800 0.97162 0.96494 0.93673 1.20502 0.98613 0.96519 0.95229 1.21269 0.95633 0.93748 0.99851 1.21040 0.96526 0.96903 0.97302 1.22291 0.98249 1.01020 0.94269 1.21086 0.96892 0.95608 0.98465 0.92229 0.88416 0.87646 0.77574 0.89287 0.90007 0.84608 0.85602 0.84577 0.90541 0.90136 0.90861 0.90462 0.90027 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.33 13.67 55.48 0.76 -25.57 16 2 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 3 Si 0.94 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.38 -11.75 9.65 30.92 0.30 -11.45 16 8 H 0.09 2.97 6.86 -52.49 -0.36 2.61 16 9 O -0.21 -6.44 9.75 -20.71 -0.20 -6.65 16 10 C 0.40 10.50 6.29 36.00 0.23 10.73 16 11 O -0.54 -15.68 15.29 -19.28 -0.29 -15.97 16 12 C 0.16 3.24 3.39 -68.10 -0.23 3.01 16 13 H 0.10 2.17 8.14 -51.93 -0.42 1.75 16 14 C -0.11 -1.66 6.21 -24.89 -0.15 -1.81 16 15 C 0.09 0.97 4.43 -24.70 -0.11 0.86 16 16 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 17 O -0.55 -5.96 13.46 -35.23 -0.47 -6.43 16 18 C 0.06 0.77 4.73 -2.65 -0.01 0.76 16 19 N -0.59 -10.52 2.75 -165.56 -0.46 -10.98 16 20 C 0.58 11.46 7.09 -12.33 -0.09 11.37 16 21 O -0.51 -12.72 16.30 5.31 0.09 -12.63 16 22 C -0.11 -1.78 5.70 -105.02 -0.60 -2.38 16 23 C -0.06 -0.87 9.59 -39.23 -0.38 -1.25 16 24 C -0.11 -1.27 10.02 -39.58 -0.40 -1.67 16 25 C -0.08 -0.82 6.14 -104.06 -0.64 -1.46 16 26 C -0.11 -1.14 6.13 -104.23 -0.64 -1.78 16 27 C -0.09 -1.09 7.94 -39.13 -0.31 -1.40 16 28 C -0.08 -0.59 6.77 -26.84 -0.18 -0.77 16 29 C -0.12 -0.74 7.08 -25.35 -0.18 -0.92 16 30 C -0.08 -0.59 6.77 -26.84 -0.18 -0.77 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.10 1.50 7.84 -51.93 -0.41 1.09 16 33 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.38 2.19 9.12 45.56 0.42 2.60 16 35 H 0.09 0.84 6.17 -51.93 -0.32 0.52 16 36 H 0.08 0.92 7.28 -51.92 -0.38 0.54 16 37 H 0.14 1.92 7.88 -52.49 -0.41 1.50 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.14 1.53 4.54 -52.49 -0.24 1.29 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -40.81 374.84 -8.69 -49.50 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.06 Total: 3.57 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -3.67 Total: 2.18 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.30 Total: -36.55 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.88 Total: -41.68 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.81 -8.69 -49.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725997236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.961 kcal (2) G-P(sol) polarization free energy of solvation -40.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds