Wall clock time and date at job start Wed Apr 1 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86795 * 120.00390 * 2 1 4 4 H 1.48508 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47294 * 300.00034 * 3 2 1 6 6 H 1.48498 * 109.47140 * 60.00397 * 3 2 1 7 7 C 1.38755 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99928 * 180.02562 * 7 2 1 9 9 O 1.34916 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.34318 * 117.00227 * 180.02562 * 9 7 2 11 11 O 1.21209 * 119.99660 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99983 * 180.02562 * 10 9 7 13 13 H 1.08993 * 110.00334 * 40.35054 * 12 10 9 14 14 C 1.54332 * 109.87820 * 279.25704 * 12 10 9 15 15 C 1.55157 * 102.94056 * 218.39102 * 14 12 10 16 16 H 1.08998 * 111.00681 * 153.57557 * 15 14 12 17 17 O 1.42902 * 111.00516 * 277.43182 * 15 14 12 18 18 C 1.54695 * 101.67595 * 35.33535 * 15 14 12 19 19 N 1.47021 * 109.88220 * 161.45346 * 12 10 9 20 20 C 1.34778 * 125.64842 * 298.31445 * 19 12 10 21 21 O 1.21558 * 119.99593 * 3.36567 * 20 19 12 22 22 C 1.47842 * 120.00163 * 183.63486 * 20 19 12 23 23 C 1.39590 * 120.18616 * 153.31688 * 22 20 19 24 24 C 1.37808 * 119.78892 * 179.97438 * 23 22 20 25 25 C 1.38664 * 120.40989 * 359.97213 * 24 23 22 26 26 C 1.38377 * 120.07878 * 0.02777 * 25 24 23 27 27 C 1.38244 * 119.99426 * 359.74386 * 26 25 24 28 28 C 1.51394 * 109.74642 * 179.97438 * 26 25 24 29 29 C 1.54331 * 105.16831 * 17.22739 * 28 26 25 30 30 C 1.51418 * 130.22070 * 180.02562 * 25 24 23 31 31 H 0.97005 * 119.99186 * 0.02562 * 1 2 3 32 32 H 1.08995 * 110.72157 * 336.75636 * 14 12 10 33 33 H 1.09000 * 110.71945 * 100.03071 * 14 12 10 34 34 H 0.96700 * 113.99887 * 180.02562 * 17 15 14 35 35 H 1.08998 * 110.39185 * 204.35649 * 18 15 14 36 36 H 1.09008 * 110.23348 * 82.11749 * 18 15 14 37 37 H 1.08000 * 120.10825 * 359.95210 * 23 22 20 38 38 H 1.08002 * 119.79522 * 180.02562 * 24 23 22 39 39 H 1.07997 * 119.94573 * 180.25111 * 27 26 25 40 40 H 1.08999 * 110.30093 * 136.14975 * 28 26 25 41 41 H 1.08993 * 110.30417 * 258.20602 * 28 26 25 42 42 H 1.09010 * 110.82152 * 91.81574 * 29 28 26 43 43 H 1.09002 * 110.81851 * 215.15492 * 29 28 26 44 44 H 1.09002 * 110.30011 * 281.73030 * 30 25 24 45 45 H 1.09001 * 110.29950 * 43.87349 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6176 0.0000 4 1 3.7086 1.3461 -0.0006 5 1 1.8899 2.3964 -1.2125 6 1 1.8899 2.3963 1.2125 7 6 2.0081 -1.2017 -0.0005 8 1 3.0881 -1.2018 -0.0001 9 8 1.3335 -2.3701 -0.0005 10 6 2.0649 -3.4966 -0.0005 11 8 3.2753 -3.4333 -0.0010 12 6 1.3806 -4.8393 -0.0011 13 1 0.5161 -4.8169 -0.6646 14 6 0.9338 -5.2011 1.4311 15 6 1.2107 -6.7259 1.5066 16 1 1.3908 -7.0399 2.5348 17 8 0.1381 -7.4707 0.9262 18 6 2.4940 -6.8538 0.6524 19 7 2.3216 -5.8799 -0.4408 20 6 2.9225 -5.9371 -1.6458 21 8 2.7489 -5.0462 -2.4544 22 6 3.7879 -7.0864 -1.9865 23 6 3.9607 -7.4642 -3.3191 24 6 4.7697 -8.5364 -3.6274 25 6 5.4135 -9.2418 -2.6220 26 6 5.2463 -8.8722 -1.2990 27 6 4.4408 -7.7953 -0.9788 28 6 6.0482 -9.7941 -0.4052 29 6 7.0621 -10.4839 -1.3422 30 6 6.3398 -10.4367 -2.7050 31 1 -0.4849 0.8402 -0.0004 32 1 1.5301 -4.6639 2.1685 33 1 -0.1278 -4.9948 1.5676 34 1 0.2662 -8.4289 0.9506 35 1 2.5839 -7.8630 0.2507 36 1 3.3709 -6.6028 1.2494 37 1 3.4617 -6.9182 -4.1061 38 1 4.9038 -8.8285 -4.6584 39 1 4.3140 -7.5051 0.0537 40 1 6.5704 -9.2193 0.3597 41 1 5.3954 -10.5337 0.0583 42 1 7.9972 -9.9249 -1.3801 43 1 7.2403 -11.5129 -1.0300 44 1 5.7657 -11.3502 -2.8604 45 1 7.0611 -10.3008 -3.5109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725997236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:55 Heat of formation + Delta-G solvation = -147.808712 kcal Electronic energy + Delta-G solvation = -30558.446972 eV Core-core repulsion = 26312.376358 eV Total energy + Delta-G solvation = -4246.070614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16014 -41.12153 -40.24028 -39.13114 -37.32059 -36.47554 -36.21761 -34.38102 -33.32113 -31.88429 -30.42971 -30.11226 -28.30165 -27.62394 -25.86110 -23.95733 -23.45943 -22.62373 -21.81334 -21.46190 -20.33870 -19.98287 -19.09961 -18.42361 -18.31861 -17.26529 -16.97750 -16.84239 -16.52892 -16.45446 -16.25807 -16.15860 -15.62432 -15.28563 -15.08773 -14.75884 -14.60144 -14.32938 -14.09035 -13.85952 -13.67386 -13.61222 -13.56996 -13.29906 -13.08891 -12.94400 -12.78673 -12.49422 -12.41963 -12.23421 -12.06288 -12.05146 -11.99540 -11.75061 -11.66709 -11.44027 -11.21254 -10.89724 -10.75033 -9.95808 -9.89172 -9.52517 -8.59425 -6.39956 -0.20429 0.30429 1.20318 1.26873 1.43801 1.50371 1.63285 1.69370 2.10588 2.61585 2.72808 2.89228 3.07916 3.22612 3.33564 3.49123 3.60463 3.66996 3.91742 3.96246 4.01359 4.15090 4.22599 4.27926 4.35007 4.39178 4.43812 4.54667 4.62029 4.66755 4.71025 4.74256 4.87852 4.90910 4.96809 4.97912 5.03400 5.10987 5.13760 5.21035 5.30248 5.33368 5.42480 5.53008 5.77419 5.86674 6.26667 6.57738 6.84199 6.92204 6.96425 7.68505 8.61603 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.002948 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.467636 B = 9494.413661 C =10436.008107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.004 4.004 3 Si 1.019 2.981 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.249 1.249 7 C -0.421 4.421 8 H 0.074 0.926 9 O -0.243 6.243 10 C 0.393 3.607 11 O -0.573 6.573 12 C 0.160 3.840 13 H 0.084 0.916 14 C -0.108 4.108 15 C 0.112 3.888 16 H 0.139 0.861 17 O -0.570 6.570 18 C 0.055 3.945 19 N -0.588 5.588 20 C 0.563 3.437 21 O -0.587 6.587 22 C -0.143 4.143 23 C -0.083 4.083 24 C -0.114 4.114 25 C -0.076 4.076 26 C -0.108 4.108 27 C -0.087 4.087 28 C -0.080 4.080 29 C -0.118 4.118 30 C -0.083 4.083 31 H 0.280 0.720 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.402 0.598 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -28.561 3.438 30.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.204 4.204 3 Si 0.837 3.163 4 H -0.193 1.193 5 H -0.185 1.185 6 H -0.173 1.173 7 C -0.497 4.497 8 H 0.092 0.908 9 O -0.151 6.151 10 C 0.239 3.761 11 O -0.470 6.470 12 C 0.053 3.947 13 H 0.102 0.898 14 C -0.146 4.146 15 C 0.053 3.947 16 H 0.157 0.843 17 O -0.379 6.379 18 C -0.066 4.066 19 N -0.321 5.321 20 C 0.355 3.645 21 O -0.468 6.468 22 C -0.146 4.146 23 C -0.102 4.102 24 C -0.131 4.131 25 C -0.077 4.077 26 C -0.108 4.108 27 C -0.105 4.105 28 C -0.116 4.116 29 C -0.155 4.155 30 C -0.119 4.119 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.254 0.746 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.490 -27.347 2.860 29.088 hybrid contribution 0.205 1.288 -0.605 1.438 sum 9.695 -26.059 2.255 27.895 Atomic orbital electron populations 1.70087 1.07581 1.29407 1.46725 1.26582 0.96992 1.02277 0.94548 0.84575 0.77523 0.74575 0.79611 1.19283 1.18490 1.17336 1.21392 0.91877 0.81246 1.55190 0.90829 1.83888 1.40256 1.14163 1.76746 1.24511 0.86926 0.88293 0.76369 1.90488 1.17000 1.88396 1.51097 1.20955 0.90951 0.82056 1.00695 0.89831 1.22700 1.04424 0.96808 0.90675 1.22928 0.84611 0.89559 0.97611 0.84350 1.86543 1.43452 1.24163 1.83764 1.23881 1.00499 0.93905 0.88267 1.48115 1.44689 1.25098 1.14187 1.18777 0.79305 0.86203 0.80250 1.90788 1.64082 1.41353 1.50593 1.19526 1.02244 0.96840 0.95975 1.21152 0.97829 0.96733 0.94486 1.20782 0.96876 0.94747 1.00737 1.21335 0.96266 0.96849 0.93219 1.20958 0.97613 0.95798 0.96464 1.21347 0.95585 0.94006 0.99556 1.21179 0.96679 0.96688 0.97098 1.22346 0.97572 1.02419 0.93141 1.21224 0.96584 0.94523 0.99596 0.91028 0.88518 0.87395 0.74641 0.86082 0.88585 0.86534 0.83220 0.83372 0.89947 0.87869 0.91073 0.87884 0.88042 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.37 13.67 21.63 0.30 -56.08 16 2 C 0.00 -0.23 5.49 84.87 0.47 0.23 16 3 Si 1.02 46.67 29.55 68.60 2.03 48.69 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.42 -27.97 9.65 67.94 0.66 -27.32 16 8 H 0.07 5.03 6.86 -2.91 -0.02 5.01 16 9 O -0.24 -15.85 9.75 14.84 0.14 -15.71 16 10 C 0.39 22.47 6.29 71.23 0.45 22.92 16 11 O -0.57 -35.44 15.29 21.00 0.32 -35.12 16 12 C 0.16 6.89 3.39 44.60 0.15 7.04 16 13 H 0.08 3.88 8.14 -2.39 -0.02 3.86 16 14 C -0.11 -3.32 6.21 31.79 0.20 -3.12 16 15 C 0.11 2.13 4.43 31.91 0.14 2.28 16 16 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 17 O -0.57 -10.81 13.46 -148.98 -2.01 -12.81 16 18 C 0.06 1.23 4.73 86.78 0.41 1.64 16 19 N -0.59 -21.97 2.75 -796.00 -2.19 -24.16 16 20 C 0.56 24.14 7.09 86.79 0.62 24.76 16 21 O -0.59 -32.20 16.30 -3.90 -0.06 -32.26 16 22 C -0.14 -4.64 5.70 -20.12 -0.11 -4.76 16 23 C -0.08 -2.46 9.59 22.49 0.22 -2.24 16 24 C -0.11 -2.43 10.02 22.27 0.22 -2.21 16 25 C -0.08 -1.35 6.14 -19.50 -0.12 -1.47 16 26 C -0.11 -1.97 6.13 -19.61 -0.12 -2.09 16 27 C -0.09 -2.07 7.94 22.56 0.18 -1.89 16 28 C -0.08 -0.80 6.77 30.52 0.21 -0.60 16 29 C -0.12 -0.88 7.08 31.49 0.22 -0.66 16 30 C -0.08 -0.80 6.77 30.52 0.21 -0.60 16 31 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 32 H 0.10 2.98 7.84 -2.39 -0.02 2.96 16 33 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.40 3.13 9.12 -74.06 -0.68 2.45 16 35 H 0.12 1.94 6.17 -2.39 -0.01 1.93 16 36 H 0.10 1.92 7.28 -2.38 -0.02 1.90 16 37 H 0.12 3.75 7.88 -2.91 -0.02 3.73 16 38 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.15 3.04 4.54 -2.91 -0.01 3.03 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -99.75 374.84 2.88 -96.87 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.37 Total: 18.66 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 3.98 Total: 11.91 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -1.90 Total: -80.24 kcal Atomic # 8 Polarization: -94.29 SS G_CDS: -1.60 Total: -95.90 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -99.75 2.88 -96.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725997236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.937 kcal (2) G-P(sol) polarization free energy of solvation -99.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds