Wall clock time and date at job start Wed Apr 1 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 C 1.35845 * 120.90210 * 299.72433 * 4 2 1 6 6 C 1.41007 * 119.82430 * 179.69826 * 5 4 2 7 7 O 1.21786 * 119.15749 * 180.32728 * 6 5 4 8 8 O 1.34221 * 121.68242 * 0.61002 * 6 5 4 9 9 C 1.35024 * 121.46672 * 359.69281 * 8 6 5 10 10 C 1.38686 * 120.73588 * 180.02562 * 9 8 6 11 11 C 1.38515 * 119.78840 * 179.97438 * 10 9 8 12 12 O 1.35740 * 119.72742 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99846 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46897 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00268 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99733 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00042 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47290 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99863 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00392 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00315 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99598 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47433 * 90.00120 * 22 20 18 24 24 H 1.48506 * 109.47349 * 209.99944 * 22 20 18 25 25 H 1.48506 * 109.47369 * 330.00116 * 22 20 18 26 26 C 1.39365 * 120.54312 * 359.97415 * 11 10 9 27 27 C 1.36475 * 120.43290 * 0.02638 * 26 11 10 28 28 C 1.39968 * 119.79069 * 359.97438 * 27 26 11 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.07994 * 120.08675 * 359.97438 * 5 4 2 37 37 H 1.08001 * 120.10243 * 359.97438 * 10 9 8 38 38 H 1.09004 * 109.47270 * 299.99736 * 13 12 11 39 39 H 1.08995 * 109.47012 * 60.00293 * 13 12 11 40 40 H 0.97002 * 119.99908 * 359.97438 * 16 14 13 41 41 H 1.08999 * 109.47078 * 300.00327 * 17 16 14 42 42 H 1.08998 * 109.47217 * 59.99817 * 17 16 14 43 43 H 0.97003 * 119.99856 * 180.02562 * 21 20 18 44 44 H 1.07997 * 119.78905 * 180.02562 * 26 11 10 45 45 H 1.07999 * 120.10172 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.7200 -0.2588 2.4731 6 6 2.1971 -0.9448 3.6090 7 8 1.9047 -0.5328 4.7172 8 8 2.9698 -2.0368 3.5001 9 6 3.3218 -2.5339 2.2950 10 6 4.1205 -3.6636 2.2001 11 6 4.4694 -4.1571 0.9538 12 8 5.2516 -5.2626 0.8623 13 6 5.5753 -5.7215 -0.4518 14 6 6.4435 -6.9494 -0.3554 15 8 6.7541 -7.3887 0.7315 16 7 6.8740 -7.5601 -1.4772 17 6 7.7175 -8.7542 -1.3835 18 6 8.0590 -9.2380 -2.7693 19 1 7.6846 -8.7091 -3.6334 20 6 8.8492 -10.3557 -2.9341 21 7 9.1467 -10.7782 -4.1434 22 14 9.4972 -11.2700 -1.4396 23 1 8.5258 -12.3207 -1.0424 24 1 10.8001 -11.9006 -1.7715 25 1 9.6809 -10.3157 -0.3167 26 6 4.0238 -3.5277 -0.2072 27 6 3.2372 -2.4150 -0.1320 28 6 2.8750 -1.9027 1.1192 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.1043 0.6206 2.5907 37 1 4.4693 -4.1571 3.0952 38 1 4.6580 -5.9666 -0.9873 39 1 6.1110 -4.9384 -0.9883 40 1 6.6246 -7.2094 -2.3465 41 1 8.6349 -8.5099 -0.8481 42 1 7.1812 -9.5368 -0.8470 43 1 9.7024 -11.5648 -4.2593 44 1 4.3028 -3.9231 -1.1727 45 1 2.8953 -1.9314 -1.0350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728703944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:09 Heat of formation + Delta-G solvation = -109.501897 kcal Electronic energy + Delta-G solvation = -28571.516558 eV Core-core repulsion = 24327.107053 eV Total energy + Delta-G solvation = -4244.409506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29852 -40.51800 -39.09574 -38.25925 -37.91780 -36.42847 -34.49271 -32.69645 -32.51454 -31.54986 -30.04306 -29.19681 -27.75698 -27.25510 -25.08751 -24.51300 -23.46733 -22.30472 -20.98574 -20.31055 -19.95574 -18.59327 -17.94743 -17.68049 -17.08837 -17.07693 -16.51570 -16.37337 -15.70270 -15.45048 -15.23913 -15.03019 -14.76915 -14.51467 -14.41042 -14.08951 -14.03256 -13.98680 -13.56850 -13.35710 -12.90687 -12.86513 -12.67744 -12.64097 -12.44805 -12.22285 -12.08455 -11.88117 -11.62157 -11.47421 -11.32793 -11.13033 -10.85120 -10.55375 -10.22158 -10.06030 -9.62360 -9.46974 -9.27131 -8.88870 -8.45045 -8.37056 -6.30883 -4.34492 -0.14650 0.60396 1.14855 1.87115 2.46465 2.65660 2.88916 3.20858 3.25360 3.28292 3.35610 3.62659 3.71141 3.85556 3.96732 4.15971 4.25243 4.35418 4.49097 4.49258 4.59197 4.67176 4.71639 4.87604 4.88802 5.04444 5.04587 5.06148 5.14957 5.18041 5.22674 5.30071 5.35391 5.42038 5.57387 5.62710 5.64687 5.72274 5.82900 5.86996 6.63436 6.82024 6.85905 6.92924 7.00588 7.16858 7.23694 7.95002 8.31546 8.57936 8.70320 9.28074 10.80691 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.001819 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.608852 B =15386.870609 C =16445.111629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C -0.146 4.146 4 C 0.053 3.947 5 C -0.268 4.268 6 C 0.513 3.487 7 O -0.470 6.470 8 O -0.270 6.270 9 C 0.192 3.808 10 C -0.175 4.175 11 C 0.197 3.803 12 O -0.275 6.275 13 C 0.037 3.963 14 C 0.502 3.498 15 O -0.532 6.532 16 N -0.698 5.698 17 C 0.222 3.778 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.890 5.890 22 Si 0.876 3.124 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.228 4.228 27 C -0.013 4.013 28 C -0.197 4.197 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.398 0.602 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.269 0.731 44 H 0.145 0.855 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.063 24.191 3.781 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.204 4.204 4 C 0.052 3.948 5 C -0.287 4.287 6 C 0.363 3.637 7 O -0.358 6.358 8 O -0.182 6.182 9 C 0.146 3.854 10 C -0.194 4.194 11 C 0.149 3.851 12 O -0.185 6.185 13 C -0.042 4.042 14 C 0.284 3.716 15 O -0.409 6.409 16 N -0.349 5.349 17 C 0.100 3.900 18 C -0.585 4.585 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.526 5.526 22 Si 0.702 3.298 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.185 1.185 26 C -0.246 4.246 27 C -0.031 4.031 28 C -0.198 4.198 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.232 0.768 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.079 0.921 44 H 0.163 0.837 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.699 23.683 5.315 29.462 hybrid contribution 0.202 -0.330 -0.132 0.409 sum -16.497 23.353 5.183 29.058 Atomic orbital electron populations 1.21899 0.92801 1.02769 1.02891 1.20378 0.96990 0.96617 0.94749 1.21900 1.01712 0.93863 1.02889 1.21486 0.87947 0.89738 0.95591 1.22227 1.09692 1.05654 0.91112 1.19161 0.76351 0.77423 0.90756 1.90981 1.54232 1.61547 1.29044 1.83555 1.60205 1.43091 1.31300 1.18483 0.93405 0.92235 0.81250 1.19486 1.04585 0.97631 0.97725 1.18836 0.87914 0.85440 0.92935 1.86192 1.63026 1.39667 1.29662 1.22769 1.00724 0.97325 0.83370 1.19834 0.81592 0.84510 0.85631 1.90730 1.57368 1.65454 1.27390 1.46059 1.51422 1.30246 1.07167 1.19568 0.89692 0.82131 0.98580 1.21038 1.33540 1.13168 0.90790 0.90133 1.24786 0.95108 0.96506 0.96139 1.69868 1.36914 1.24676 1.21181 0.86825 0.78900 0.80696 0.83331 1.19749 1.20788 1.18467 1.21145 1.05175 0.99934 0.98373 1.20692 0.92941 0.93423 0.96036 1.18871 1.07469 1.00055 0.93394 0.92013 0.91379 0.91879 0.89051 0.91877 0.92011 0.91381 0.82238 0.82717 0.88529 0.88525 0.76766 0.95376 0.95828 0.92124 0.83750 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.01 37.16 0.33 -0.20 16 2 C -0.07 -0.29 3.03 -91.77 -0.28 -0.57 16 3 C -0.15 -0.54 9.01 37.16 0.33 -0.20 16 4 C 0.05 0.37 4.97 -102.18 -0.51 -0.14 16 5 C -0.27 -2.26 8.67 -39.39 -0.34 -2.60 16 6 C 0.51 6.18 7.89 31.78 0.25 6.43 16 7 O -0.47 -7.08 17.91 -19.59 -0.35 -7.43 16 8 O -0.27 -3.33 9.82 -20.79 -0.20 -3.54 16 9 C 0.19 2.03 6.76 -38.48 -0.26 1.77 16 10 C -0.18 -1.91 9.94 -39.31 -0.39 -2.30 16 11 C 0.20 2.06 6.69 -39.06 -0.26 1.80 16 12 O -0.28 -3.61 9.65 -38.84 -0.37 -3.99 16 13 C 0.04 0.41 5.21 36.01 0.19 0.60 16 14 C 0.50 8.62 7.91 -10.98 -0.09 8.53 16 15 O -0.53 -11.73 16.50 -14.35 -0.24 -11.97 16 16 N -0.70 -12.59 5.55 -61.48 -0.34 -12.93 16 17 C 0.22 5.12 4.50 -5.20 -0.02 5.10 16 18 C -0.55 -14.21 9.83 -34.44 -0.34 -14.55 16 19 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 20 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 22 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 26 C -0.23 -1.71 8.96 -39.80 -0.36 -2.07 16 27 C -0.01 -0.08 9.44 -39.57 -0.37 -0.46 16 28 C -0.20 -1.64 5.87 -105.01 -0.62 -2.26 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.24 7.46 -51.93 -0.39 -0.15 16 32 H 0.09 0.27 5.79 -51.93 -0.30 -0.03 16 33 H 0.06 0.24 7.43 -51.93 -0.39 -0.15 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.16 1.06 7.18 -52.49 -0.38 0.69 16 37 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 0.78 7.64 -51.93 -0.40 0.39 16 39 H 0.10 0.79 7.64 -51.93 -0.40 0.39 16 40 H 0.40 5.92 8.32 -40.82 -0.34 5.58 16 41 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 42 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.14 0.74 6.24 -52.49 -0.33 0.42 16 45 H 0.14 0.49 6.09 -52.49 -0.32 0.17 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -34.68 380.08 -8.19 -42.87 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.69 Total: -1.01 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.82 Total: 0.94 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.43 Total: -37.63 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.17 Total: -26.92 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.68 -8.19 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728703944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.631 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds