Wall clock time and date at job start Wed Apr 1 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 C 1.35845 * 120.90210 * 299.72433 * 4 2 1 6 6 C 1.41007 * 119.82430 * 179.69826 * 5 4 2 7 7 O 1.21786 * 119.15749 * 180.32728 * 6 5 4 8 8 O 1.34221 * 121.68242 * 0.61002 * 6 5 4 9 9 C 1.35024 * 121.46672 * 359.69281 * 8 6 5 10 10 C 1.38686 * 120.73588 * 180.02562 * 9 8 6 11 11 C 1.38515 * 119.78840 * 179.97438 * 10 9 8 12 12 O 1.35740 * 119.72742 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99846 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46897 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00268 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99733 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00042 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47290 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99863 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00392 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00315 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99598 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47433 * 90.00120 * 22 20 18 24 24 H 1.48506 * 109.47349 * 209.99944 * 22 20 18 25 25 H 1.48506 * 109.47369 * 330.00116 * 22 20 18 26 26 C 1.39365 * 120.54312 * 359.97415 * 11 10 9 27 27 C 1.36475 * 120.43290 * 0.02638 * 26 11 10 28 28 C 1.39968 * 119.79069 * 359.97438 * 27 26 11 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.07994 * 120.08675 * 359.97438 * 5 4 2 37 37 H 1.08001 * 120.10243 * 359.97438 * 10 9 8 38 38 H 1.09004 * 109.47270 * 299.99736 * 13 12 11 39 39 H 1.08995 * 109.47012 * 60.00293 * 13 12 11 40 40 H 0.97002 * 119.99908 * 359.97438 * 16 14 13 41 41 H 1.08999 * 109.47078 * 300.00327 * 17 16 14 42 42 H 1.08998 * 109.47217 * 59.99817 * 17 16 14 43 43 H 0.97003 * 119.99856 * 180.02562 * 21 20 18 44 44 H 1.07997 * 119.78905 * 180.02562 * 26 11 10 45 45 H 1.07999 * 120.10172 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.7200 -0.2588 2.4731 6 6 2.1971 -0.9448 3.6090 7 8 1.9047 -0.5328 4.7172 8 8 2.9698 -2.0368 3.5001 9 6 3.3218 -2.5339 2.2950 10 6 4.1205 -3.6636 2.2001 11 6 4.4694 -4.1571 0.9538 12 8 5.2516 -5.2626 0.8623 13 6 5.5753 -5.7215 -0.4518 14 6 6.4435 -6.9494 -0.3554 15 8 6.7541 -7.3887 0.7315 16 7 6.8740 -7.5601 -1.4772 17 6 7.7175 -8.7542 -1.3835 18 6 8.0590 -9.2380 -2.7693 19 1 7.6846 -8.7091 -3.6334 20 6 8.8492 -10.3557 -2.9341 21 7 9.1467 -10.7782 -4.1434 22 14 9.4972 -11.2700 -1.4396 23 1 8.5258 -12.3207 -1.0424 24 1 10.8001 -11.9006 -1.7715 25 1 9.6809 -10.3157 -0.3167 26 6 4.0238 -3.5277 -0.2072 27 6 3.2372 -2.4150 -0.1320 28 6 2.8750 -1.9027 1.1192 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.1043 0.6206 2.5907 37 1 4.4693 -4.1571 3.0952 38 1 4.6580 -5.9666 -0.9873 39 1 6.1110 -4.9384 -0.9883 40 1 6.6246 -7.2094 -2.3465 41 1 8.6349 -8.5099 -0.8481 42 1 7.1812 -9.5368 -0.8470 43 1 9.7024 -11.5648 -4.2593 44 1 4.3028 -3.9231 -1.1727 45 1 2.8953 -1.9314 -1.0350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728703944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:08 Heat of formation + Delta-G solvation = -131.419746 kcal Electronic energy + Delta-G solvation = -28572.466988 eV Core-core repulsion = 24327.107053 eV Total energy + Delta-G solvation = -4245.359935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.09752 -41.44674 -40.31320 -39.24130 -38.57252 -37.15282 -36.19657 -34.45384 -33.23225 -32.26711 -31.10996 -30.32101 -28.64048 -27.98723 -25.73308 -25.37042 -24.14048 -24.03238 -21.89783 -21.34721 -20.79560 -19.41100 -19.19065 -18.55062 -18.26116 -17.98264 -17.73440 -17.46173 -16.85521 -16.57570 -16.23905 -15.86936 -15.80928 -15.61450 -15.21336 -15.07134 -14.73475 -14.61017 -14.55659 -14.33366 -14.30677 -14.12954 -13.89416 -13.21978 -13.20575 -13.08655 -13.01855 -12.72480 -12.57265 -12.39867 -12.33998 -12.01475 -11.94917 -11.66874 -11.65248 -11.31741 -10.92800 -10.91461 -10.86751 -10.02500 -9.98413 -9.18082 -8.39794 -6.46314 -0.83347 -0.10738 0.44031 1.03478 1.32610 1.36456 1.47219 1.56957 1.69715 1.70301 2.27856 2.56275 2.71859 2.96052 3.06618 3.09720 3.33299 3.52387 3.75496 3.82694 4.04710 4.06519 4.08988 4.13367 4.13796 4.21118 4.37803 4.51750 4.66587 4.70592 4.77668 4.84425 4.92036 4.95260 5.00802 5.01318 5.07901 5.14345 5.21685 5.24975 5.28711 5.40564 5.42975 5.46741 6.01267 6.03827 6.13064 6.32406 6.54622 6.75805 7.14784 7.33183 8.74334 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.001819 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.608852 B =15386.870609 C =16445.111629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.148 4.148 4 C 0.077 3.923 5 C -0.282 4.282 6 C 0.506 3.494 7 O -0.519 6.519 8 O -0.293 6.293 9 C 0.169 3.831 10 C -0.197 4.197 11 C 0.187 3.813 12 O -0.310 6.310 13 C 0.046 3.954 14 C 0.498 3.502 15 O -0.588 6.588 16 N -0.694 5.694 17 C 0.231 3.769 18 C -0.544 4.544 19 H 0.067 0.933 20 C 0.028 3.972 21 N -0.928 5.928 22 Si 0.931 3.069 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.262 1.262 26 C -0.216 4.216 27 C 0.004 3.996 28 C -0.199 4.199 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.175 0.825 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.416 0.584 41 H 0.013 0.987 42 H 0.012 0.988 43 H 0.272 0.728 44 H 0.181 0.819 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.347 25.950 0.939 31.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.205 4.205 4 C 0.076 3.924 5 C -0.301 4.301 6 C 0.359 3.641 7 O -0.412 6.412 8 O -0.205 6.205 9 C 0.125 3.875 10 C -0.216 4.216 11 C 0.140 3.860 12 O -0.221 6.221 13 C -0.031 4.031 14 C 0.285 3.715 15 O -0.469 6.469 16 N -0.346 5.346 17 C 0.107 3.893 18 C -0.582 4.582 19 H 0.086 0.914 20 C -0.172 4.172 21 N -0.567 5.567 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.234 4.234 27 C -0.013 4.013 28 C -0.200 4.200 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.192 0.808 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.253 0.747 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.081 0.919 44 H 0.199 0.801 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.001 25.466 2.429 31.280 hybrid contribution 0.587 -0.857 0.681 1.242 sum -17.414 24.609 3.110 30.307 Atomic orbital electron populations 1.21928 0.92201 1.02776 1.03571 1.20533 0.97325 0.96777 0.93667 1.21929 1.01518 0.93462 1.03571 1.21840 0.85775 0.88510 0.96235 1.22195 1.11045 1.06399 0.90461 1.19732 0.75828 0.77161 0.91346 1.90936 1.56419 1.62986 1.30821 1.83466 1.60479 1.43547 1.33030 1.18708 0.94459 0.92823 0.81523 1.19495 1.05720 0.98358 0.98055 1.18924 0.88230 0.85180 0.93662 1.86124 1.64087 1.41014 1.30919 1.22809 1.01658 0.95237 0.83391 1.20852 0.81020 0.85595 0.84075 1.90709 1.59428 1.67367 1.29395 1.45797 1.50953 1.29085 1.08759 1.19136 0.89890 0.83910 0.96357 1.21267 1.32567 1.12651 0.91690 0.91449 1.25533 0.95701 0.97645 0.98356 1.69962 1.38208 1.25591 1.22939 0.85948 0.78676 0.79575 0.80229 1.19153 1.20028 1.18623 1.21521 1.03992 0.99456 0.98428 1.21184 0.91187 0.92535 0.96402 1.19182 1.07202 1.00224 0.93414 0.92352 0.89625 0.92415 0.86595 0.92407 0.92349 0.89630 0.80752 0.84512 0.84331 0.84340 0.74696 0.96887 0.96983 0.91875 0.80148 0.79414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.01 71.98 0.65 0.10 16 2 C -0.07 -0.27 3.03 -11.54 -0.03 -0.30 16 3 C -0.15 -0.54 9.01 71.98 0.65 0.10 16 4 C 0.08 0.89 4.97 -18.28 -0.09 0.80 16 5 C -0.28 -4.65 8.67 22.39 0.19 -4.46 16 6 C 0.51 13.01 7.89 68.50 0.54 13.55 16 7 O -0.52 -17.01 17.91 18.99 0.34 -16.67 16 8 O -0.29 -7.83 9.82 14.70 0.14 -7.68 16 9 C 0.17 3.63 6.76 22.99 0.16 3.78 16 10 C -0.20 -4.41 9.94 22.44 0.22 -4.19 16 11 C 0.19 3.55 6.69 22.61 0.15 3.70 16 12 O -0.31 -7.59 9.65 -71.61 -0.69 -8.28 16 13 C 0.05 0.86 5.21 71.24 0.37 1.23 16 14 C 0.50 16.29 7.91 87.66 0.69 16.99 16 15 O -0.59 -26.02 16.50 16.01 0.26 -25.75 16 16 N -0.69 -23.84 5.55 -466.80 -2.59 -26.43 16 17 C 0.23 10.54 4.50 85.63 0.38 10.93 16 18 C -0.54 -28.07 9.83 25.60 0.25 -27.82 16 19 H 0.07 3.58 7.84 -2.91 -0.02 3.56 16 20 C 0.03 1.54 5.47 84.66 0.46 2.00 16 21 N -0.93 -53.28 13.96 21.45 0.30 -52.98 16 22 Si 0.93 42.66 27.47 68.60 1.88 44.55 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.26 -11.96 6.54 99.48 0.65 -11.31 16 26 C -0.22 -2.16 8.96 22.13 0.20 -1.97 16 27 C 0.00 0.03 9.44 22.28 0.21 0.24 16 28 C -0.20 -2.82 5.87 -20.12 -0.12 -2.94 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 0.29 7.46 -2.38 -0.02 0.28 16 32 H 0.12 -0.05 5.79 -2.39 -0.01 -0.07 16 33 H 0.06 0.29 7.43 -2.39 -0.02 0.27 16 34 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.18 2.24 7.18 -2.91 -0.02 2.22 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 38 H 0.14 1.46 7.64 -2.38 -0.02 1.44 16 39 H 0.14 1.46 7.64 -2.39 -0.02 1.44 16 40 H 0.42 11.23 8.32 -92.71 -0.77 10.46 16 41 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 42 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 43 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.18 0.52 6.24 -2.91 -0.02 0.50 16 45 H 0.19 -0.18 6.09 -2.91 -0.02 -0.19 16 Total: -1.00 -81.32 380.08 4.76 -76.56 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.22 Total: 4.94 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 4.89 Total: 11.75 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.29 Total: -79.41 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: 0.06 Total: -58.39 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.55 kcal Total: -81.32 4.76 -76.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728703944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.860 kcal (2) G-P(sol) polarization free energy of solvation -81.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds