Wall clock time and date at job start Wed Apr 1 2020 04:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 C 1.52997 * 109.47257 * 240.00420 * 2 1 3 5 5 O 1.45195 * 109.46781 * 119.99851 * 2 1 3 6 6 C 1.34639 * 117.00201 * 60.00754 * 5 2 1 7 7 O 1.21510 * 119.99387 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00344 * 179.97438 * 6 5 2 9 9 C 1.47031 * 125.64609 * 354.04720 * 8 6 5 10 10 C 1.54324 * 107.39914 * 178.90060 * 9 8 6 11 11 C 1.55398 * 102.83058 * 337.97554 * 10 9 8 12 12 C 1.47423 * 125.64940 * 174.09144 * 8 6 5 13 13 H 1.08996 * 110.36328 * 85.14565 * 12 8 6 14 14 C 1.52994 * 110.36873 * 322.92932 * 12 8 6 15 15 O 1.45193 * 109.47114 * 71.05544 * 14 12 8 16 16 C 1.34230 * 117.00481 * 180.02562 * 15 14 12 17 17 O 1.20830 * 119.99452 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00621 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47609 * 180.02562 * 18 16 15 20 20 C 1.76192 * 100.00375 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99855 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00036 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47083 * 89.99914 * 24 22 20 26 26 H 1.48496 * 109.47170 * 209.99781 * 24 22 20 27 27 H 1.48498 * 109.47292 * 330.00087 * 24 22 20 28 28 H 1.08992 * 109.47145 * 299.99831 * 1 2 3 29 29 H 1.09000 * 109.46631 * 59.99782 * 1 2 3 30 30 H 1.09000 * 109.46508 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47268 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47454 * 300.00055 * 3 2 1 33 33 H 1.09005 * 109.47122 * 59.99796 * 3 2 1 34 34 H 1.09004 * 109.46838 * 299.99676 * 4 2 1 35 35 H 1.08997 * 109.47628 * 59.99553 * 4 2 1 36 36 H 1.09000 * 109.47006 * 180.02562 * 4 2 1 37 37 H 1.08993 * 109.87976 * 298.40001 * 9 8 6 38 38 H 1.09006 * 109.87769 * 59.40640 * 9 8 6 39 39 H 1.09003 * 110.71715 * 96.25119 * 10 9 8 40 40 H 1.09001 * 110.71451 * 219.51884 * 10 9 8 41 41 H 1.08997 * 110.89290 * 277.26908 * 11 10 9 42 42 H 1.08996 * 111.07080 * 153.48414 * 11 10 9 43 43 H 1.08995 * 109.46992 * 191.05864 * 14 12 8 44 44 H 1.08997 * 109.46998 * 311.05937 * 14 12 8 45 45 H 1.09004 * 109.46835 * 300.00172 * 18 16 15 46 46 H 1.08999 * 109.47162 * 59.99254 * 18 16 15 47 47 H 0.97005 * 119.99741 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5039 8 7 2.0680 -2.6657 2.4166 9 6 3.0138 -2.1827 3.4335 10 6 3.1688 -3.2997 4.4871 11 6 1.8693 -4.1315 4.3019 12 6 1.6505 -4.0344 2.7713 13 1 2.2683 -4.7662 2.2510 14 6 0.1743 -4.2461 2.4299 15 8 0.0145 -4.3038 0.9880 16 6 -1.2301 -4.4863 0.5195 17 8 -2.1555 -4.5938 1.2890 18 6 -1.4733 -4.5571 -0.9660 19 16 -3.2388 -4.8063 -1.2772 20 6 -3.2360 -4.8496 -3.0386 21 1 -2.3085 -4.7358 -3.5801 22 6 -4.4258 -5.0301 -3.7303 23 7 -4.4237 -5.0620 -5.0463 24 14 -6.0301 -5.2262 -2.7939 25 1 -6.6452 -3.8915 -2.5807 26 1 -6.9591 -6.0799 -3.5769 27 1 -5.7614 -5.8630 -1.4795 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7215 -1.2490 37 1 3.9784 -1.9718 2.9721 38 1 2.6230 -1.2806 3.9044 39 1 4.0487 -3.9080 4.2775 40 1 3.2201 -2.8783 5.4910 41 1 1.0385 -3.6805 4.8447 42 1 2.0190 -5.1661 4.6103 43 1 -0.1702 -5.1813 2.8714 44 1 -0.4129 -3.4185 2.8277 45 1 -1.1505 -3.6260 -1.4318 46 1 -0.9087 -5.3888 -1.3874 47 1 -5.2551 -5.1884 -5.5297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733437662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:17 Heat of formation + Delta-G solvation = -157.396297 kcal Electronic energy + Delta-G solvation = -29712.500946 eV Core-core repulsion = 25601.458535 eV Total energy + Delta-G solvation = -4111.042411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96600 -39.82661 -38.89129 -36.45165 -35.85267 -34.10894 -32.41566 -31.74150 -31.26147 -29.42164 -27.48591 -27.36602 -25.77489 -25.50834 -23.97369 -22.05199 -20.85662 -20.73434 -19.25710 -18.02641 -17.64829 -17.30866 -16.92926 -16.50139 -15.97254 -15.67279 -15.44197 -14.97828 -14.83169 -14.41447 -14.24377 -13.97714 -13.66980 -13.56735 -13.34180 -13.15106 -12.79580 -12.76891 -12.58697 -12.20694 -11.99509 -11.98151 -11.91914 -11.86021 -11.77980 -11.66283 -11.39573 -11.28759 -11.24222 -11.15577 -10.99159 -10.61382 -10.39119 -10.31550 -9.99074 -9.79703 -9.56503 -8.98110 -8.89081 -8.49226 -6.91049 -6.26312 -3.98470 1.94993 2.61667 2.83915 2.88495 3.23861 3.34619 3.51470 3.64092 3.68011 4.11592 4.20410 4.34880 4.44773 4.66041 4.69241 4.69877 4.82952 4.85485 4.87963 4.95713 5.11612 5.12776 5.27360 5.29683 5.37713 5.37797 5.43164 5.47199 5.49483 5.52412 5.66205 5.67014 5.69643 5.79109 5.83913 5.88337 5.90785 6.05646 6.18809 6.31484 6.38070 6.47604 6.87792 7.38155 7.97044 8.34969 8.41087 8.46291 9.19396 10.82943 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.003305 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.340369 B = 8471.094068 C =10116.446889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.138 3.862 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.655 3.345 7 O -0.517 6.517 8 N -0.608 5.608 9 C 0.106 3.894 10 C -0.129 4.129 11 C -0.127 4.127 12 C 0.159 3.841 13 H 0.091 0.909 14 C 0.058 3.942 15 O -0.309 6.309 16 C 0.480 3.520 17 O -0.507 6.507 18 C -0.091 4.091 19 S -0.146 6.146 20 C -0.518 4.518 21 H 0.090 0.910 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.518 8.679 19.133 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.102 3.898 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.283 6.283 6 C 0.410 3.590 7 O -0.402 6.402 8 N -0.352 5.352 9 C -0.017 4.017 10 C -0.167 4.167 11 C -0.165 4.165 12 C 0.057 3.943 13 H 0.109 0.891 14 C -0.017 4.017 15 O -0.225 6.225 16 C 0.322 3.678 17 O -0.396 6.396 18 C -0.239 4.239 19 S 0.080 5.920 20 C -0.665 4.665 21 H 0.108 0.892 22 C -0.112 4.112 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.039 8.493 19.523 27.905 hybrid contribution 0.220 0.180 -0.718 0.772 sum 18.259 8.672 18.805 27.609 Atomic orbital electron populations 1.22517 0.93694 1.05466 1.02424 1.22057 0.94487 0.91230 0.82067 1.21844 1.01901 0.92777 1.03048 1.22512 1.01080 1.03978 0.96478 1.86262 1.71901 1.23596 1.46537 1.17629 0.79351 0.80490 0.81578 1.91102 1.39194 1.69063 1.40870 1.47169 1.48071 1.15590 1.24363 1.21978 0.93099 0.97558 0.89082 1.22667 0.98072 0.96798 0.99180 1.22844 0.98632 1.01979 0.93094 1.21927 0.94424 0.82689 0.95270 0.89108 1.23088 0.95291 1.02501 0.80856 1.86887 1.30659 1.82114 1.22844 1.23169 0.80800 0.72017 0.91809 1.90632 1.44139 1.45924 1.58861 1.22899 1.03429 1.06977 0.90624 1.84711 1.01912 1.95469 1.09887 1.22285 0.98800 1.57511 0.87939 0.89174 1.24693 0.98782 0.93323 0.94444 1.69943 1.28147 1.47611 1.05947 0.86742 0.83452 0.79721 0.81967 1.19218 1.19914 1.15962 0.92496 0.90921 0.89162 0.91728 0.90097 0.91717 0.88994 0.91032 0.92521 0.91276 0.91264 0.90130 0.89494 0.89870 0.88774 0.90321 0.91384 0.87297 0.87775 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.37 37.16 0.31 -2.08 16 2 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 3 C -0.14 -1.19 8.85 37.16 0.33 -0.87 16 4 C -0.18 -2.20 8.37 37.16 0.31 -1.89 16 5 O -0.37 -4.66 9.50 -40.32 -0.38 -5.04 16 6 C 0.65 9.05 7.63 54.05 0.41 9.46 16 7 O -0.52 -8.53 7.99 -27.71 -0.22 -8.75 16 8 N -0.61 -6.63 3.24 -168.78 -0.55 -7.18 16 9 C 0.11 0.77 6.89 -3.06 -0.02 0.74 16 10 C -0.13 -0.60 6.97 -24.77 -0.17 -0.77 16 11 C -0.13 -0.74 6.51 -24.45 -0.16 -0.90 16 12 C 0.16 1.55 3.50 -66.42 -0.23 1.32 16 13 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.06 0.77 4.58 37.15 0.17 0.94 16 15 O -0.31 -5.33 6.36 -47.65 -0.30 -5.63 16 16 C 0.48 9.75 7.93 36.00 0.29 10.03 16 17 O -0.51 -11.42 15.61 -18.75 -0.29 -11.71 16 18 C -0.09 -1.98 6.27 36.00 0.23 -1.76 16 19 S -0.15 -3.84 18.55 -107.50 -1.99 -5.83 16 20 C -0.52 -15.29 10.04 30.94 0.31 -14.98 16 21 H 0.09 2.79 8.03 -52.49 -0.42 2.37 16 22 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 23 N -0.88 -26.92 13.97 55.49 0.78 -26.15 16 24 Si 0.86 22.07 27.74 -169.99 -4.72 17.36 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.47 5.88 -51.93 -0.31 1.16 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.36 5.88 -51.93 -0.31 1.06 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.49 8.06 -51.93 -0.42 0.08 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 44 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 45 H 0.11 2.33 8.14 -51.91 -0.42 1.91 16 46 H 0.10 2.14 8.14 -51.92 -0.42 1.72 16 47 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -35.34 391.00 -8.01 -43.35 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.79 Total: 0.16 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 1.57 Total: 3.53 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.23 Total: -33.32 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.20 Total: -31.13 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.36 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.99 Total: -5.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.34 -8.01 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733437662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.046 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds