Wall clock time and date at job start Wed Apr 1 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 C 1.52997 * 109.47257 * 240.00420 * 2 1 3 5 5 O 1.45195 * 109.46781 * 119.99851 * 2 1 3 6 6 C 1.34639 * 117.00201 * 60.00754 * 5 2 1 7 7 O 1.21510 * 119.99387 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00344 * 179.97438 * 6 5 2 9 9 C 1.47031 * 125.64609 * 354.04720 * 8 6 5 10 10 C 1.54324 * 107.39914 * 178.90060 * 9 8 6 11 11 C 1.55398 * 102.83058 * 337.97554 * 10 9 8 12 12 C 1.47423 * 125.64940 * 174.09144 * 8 6 5 13 13 H 1.08996 * 110.36328 * 85.14565 * 12 8 6 14 14 C 1.52994 * 110.36873 * 322.92932 * 12 8 6 15 15 O 1.45193 * 109.47114 * 71.05544 * 14 12 8 16 16 C 1.34230 * 117.00481 * 180.02562 * 15 14 12 17 17 O 1.20830 * 119.99452 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00621 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47609 * 180.02562 * 18 16 15 20 20 C 1.76192 * 100.00375 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99855 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00036 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47083 * 89.99914 * 24 22 20 26 26 H 1.48496 * 109.47170 * 209.99781 * 24 22 20 27 27 H 1.48498 * 109.47292 * 330.00087 * 24 22 20 28 28 H 1.08992 * 109.47145 * 299.99831 * 1 2 3 29 29 H 1.09000 * 109.46631 * 59.99782 * 1 2 3 30 30 H 1.09000 * 109.46508 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47268 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47454 * 300.00055 * 3 2 1 33 33 H 1.09005 * 109.47122 * 59.99796 * 3 2 1 34 34 H 1.09004 * 109.46838 * 299.99676 * 4 2 1 35 35 H 1.08997 * 109.47628 * 59.99553 * 4 2 1 36 36 H 1.09000 * 109.47006 * 180.02562 * 4 2 1 37 37 H 1.08993 * 109.87976 * 298.40001 * 9 8 6 38 38 H 1.09006 * 109.87769 * 59.40640 * 9 8 6 39 39 H 1.09003 * 110.71715 * 96.25119 * 10 9 8 40 40 H 1.09001 * 110.71451 * 219.51884 * 10 9 8 41 41 H 1.08997 * 110.89290 * 277.26908 * 11 10 9 42 42 H 1.08996 * 111.07080 * 153.48414 * 11 10 9 43 43 H 1.08995 * 109.46992 * 191.05864 * 14 12 8 44 44 H 1.08997 * 109.46998 * 311.05937 * 14 12 8 45 45 H 1.09004 * 109.46835 * 300.00172 * 18 16 15 46 46 H 1.08999 * 109.47162 * 59.99254 * 18 16 15 47 47 H 0.97005 * 119.99741 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5039 8 7 2.0680 -2.6657 2.4166 9 6 3.0138 -2.1827 3.4335 10 6 3.1688 -3.2997 4.4871 11 6 1.8693 -4.1315 4.3019 12 6 1.6505 -4.0344 2.7713 13 1 2.2683 -4.7662 2.2510 14 6 0.1743 -4.2461 2.4299 15 8 0.0145 -4.3038 0.9880 16 6 -1.2301 -4.4863 0.5195 17 8 -2.1555 -4.5938 1.2890 18 6 -1.4733 -4.5571 -0.9660 19 16 -3.2388 -4.8063 -1.2772 20 6 -3.2360 -4.8496 -3.0386 21 1 -2.3085 -4.7358 -3.5801 22 6 -4.4258 -5.0301 -3.7303 23 7 -4.4237 -5.0620 -5.0463 24 14 -6.0301 -5.2262 -2.7939 25 1 -6.6452 -3.8915 -2.5807 26 1 -6.9591 -6.0799 -3.5769 27 1 -5.7614 -5.8630 -1.4795 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7215 -1.2490 37 1 3.9784 -1.9718 2.9721 38 1 2.6230 -1.2806 3.9044 39 1 4.0487 -3.9080 4.2775 40 1 3.2201 -2.8783 5.4910 41 1 1.0385 -3.6805 4.8447 42 1 2.0190 -5.1661 4.6103 43 1 -0.1702 -5.1813 2.8714 44 1 -0.4129 -3.4185 2.8277 45 1 -1.1505 -3.6260 -1.4318 46 1 -0.9087 -5.3888 -1.3874 47 1 -5.2551 -5.1884 -5.5297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733437662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:16 Heat of formation + Delta-G solvation = -178.854396 kcal Electronic energy + Delta-G solvation = -29713.431439 eV Core-core repulsion = 25601.458535 eV Total energy + Delta-G solvation = -4111.972904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95919 -41.26180 -39.77196 -37.43878 -37.32271 -35.05928 -34.71478 -32.49427 -32.27345 -30.94050 -28.38937 -28.29500 -27.92704 -26.53265 -24.87828 -22.84168 -22.13820 -21.63424 -20.20939 -19.92912 -18.79513 -18.66954 -18.10618 -17.55381 -17.34495 -17.16076 -16.81583 -16.48813 -15.96149 -15.82923 -15.28360 -15.24454 -14.95781 -14.75197 -14.44533 -14.31844 -14.03611 -13.72821 -13.42842 -13.38357 -13.31980 -13.09981 -13.04177 -13.00467 -12.86961 -12.85082 -12.83220 -12.46210 -12.41074 -12.25085 -12.17721 -11.89465 -11.62810 -11.60896 -11.52288 -11.34054 -11.20419 -10.76645 -10.64757 -9.74142 -9.08679 -8.54634 -6.28283 0.79275 1.07729 1.19043 1.29631 1.37644 1.48696 1.85222 1.94264 2.22425 2.63728 2.83038 2.88709 3.46806 3.53343 3.68880 3.75837 3.79239 3.94052 3.98586 4.04557 4.09686 4.16438 4.24036 4.38527 4.44739 4.47825 4.52202 4.59082 4.70811 4.73541 4.80508 4.82644 4.87817 4.94448 4.95273 5.10167 5.12667 5.22916 5.26962 5.33413 5.36372 5.42019 5.52982 5.67666 6.08323 6.46378 6.77626 6.88859 7.39834 8.58196 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.003305 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.340369 B = 8471.094068 C =10116.446889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.133 3.867 3 C -0.132 4.132 4 C -0.179 4.179 5 O -0.366 6.366 6 C 0.643 3.357 7 O -0.553 6.553 8 N -0.610 5.610 9 C 0.098 3.902 10 C -0.116 4.116 11 C -0.118 4.118 12 C 0.156 3.844 13 H 0.095 0.905 14 C 0.052 3.948 15 O -0.305 6.305 16 C 0.489 3.511 17 O -0.532 6.532 18 C -0.081 4.081 19 S -0.158 6.158 20 C -0.533 4.533 21 H 0.059 0.941 22 C 0.048 3.952 23 N -0.915 5.915 24 Si 0.916 3.084 25 H -0.261 1.261 26 H -0.254 1.254 27 H -0.235 1.235 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.762 9.093 21.691 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.097 3.903 3 C -0.189 4.189 4 C -0.236 4.236 5 O -0.281 6.281 6 C 0.398 3.602 7 O -0.441 6.441 8 N -0.353 5.353 9 C -0.023 4.023 10 C -0.154 4.154 11 C -0.156 4.156 12 C 0.055 3.945 13 H 0.113 0.887 14 C -0.023 4.023 15 O -0.220 6.220 16 C 0.332 3.668 17 O -0.423 6.423 18 C -0.229 4.229 19 S 0.068 5.932 20 C -0.680 4.680 21 H 0.078 0.922 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.178 1.178 27 H -0.159 1.159 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.137 0.863 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.126 0.874 46 H 0.133 0.867 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.334 8.913 22.107 30.692 hybrid contribution 0.006 0.098 -1.487 1.490 sum 19.339 9.011 20.621 29.672 Atomic orbital electron populations 1.22460 0.95079 1.03162 1.03048 1.22242 0.93535 0.92885 0.81661 1.21844 1.02573 0.90352 1.04104 1.22447 1.01666 1.02206 0.97287 1.86273 1.71756 1.23180 1.46878 1.17980 0.79307 0.80832 0.82058 1.91083 1.40853 1.69732 1.42394 1.47406 1.48092 1.15832 1.24009 1.22251 0.92345 0.98807 0.88944 1.22692 0.97727 0.95609 0.99325 1.22899 0.99385 1.03859 0.89417 1.22188 0.91707 0.82373 0.98279 0.88723 1.23493 0.97924 1.02708 0.78160 1.86887 1.28382 1.81012 1.25726 1.22724 0.81609 0.71639 0.90819 1.90612 1.45087 1.47457 1.59183 1.22789 1.00263 1.07369 0.92522 1.84479 1.06009 1.95607 1.07086 1.22397 0.97993 1.57753 0.89893 0.92234 1.25570 1.02106 0.92769 0.95327 1.70018 1.29611 1.48214 1.07409 0.85859 0.79444 0.80238 0.80775 1.18531 1.17844 1.15901 0.92067 0.90061 0.92824 0.90618 0.88629 0.91082 0.92226 0.90115 0.91416 0.90770 0.91080 0.88677 0.87147 0.89838 0.86285 0.88890 0.92802 0.87434 0.86690 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.81 8.37 71.98 0.60 -4.21 16 2 C 0.13 3.08 1.13 -10.79 -0.01 3.07 16 3 C -0.13 -2.04 8.85 71.98 0.64 -1.40 16 4 C -0.18 -4.36 8.37 71.98 0.60 -3.76 16 5 O -0.37 -9.17 9.50 -55.48 -0.53 -9.70 16 6 C 0.64 17.96 7.63 129.79 0.99 18.95 16 7 O -0.55 -18.99 7.99 27.87 0.22 -18.77 16 8 N -0.61 -12.70 3.24 -918.31 -2.98 -15.68 16 9 C 0.10 1.20 6.89 86.73 0.60 1.79 16 10 C -0.12 -0.63 6.97 31.87 0.22 -0.41 16 11 C -0.12 -1.00 6.51 32.07 0.21 -0.79 16 12 C 0.16 2.81 3.50 45.47 0.16 2.97 16 13 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 14 C 0.05 1.35 4.58 71.98 0.33 1.68 16 15 O -0.31 -10.68 6.36 -43.39 -0.28 -10.96 16 16 C 0.49 20.24 7.93 71.23 0.56 20.81 16 17 O -0.53 -24.22 15.61 21.95 0.34 -23.88 16 18 C -0.08 -3.63 6.27 71.23 0.45 -3.18 16 19 S -0.16 -8.43 18.55 -56.49 -1.05 -9.48 16 20 C -0.53 -32.36 10.04 67.95 0.68 -31.68 16 21 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 22 C 0.05 2.88 5.50 84.86 0.47 3.35 16 23 N -0.91 -56.80 13.97 21.65 0.30 -56.49 16 24 Si 0.92 45.56 27.74 68.60 1.90 47.46 16 25 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.25 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.85 5.88 -2.39 -0.01 1.84 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.06 1.87 5.88 -2.38 -0.01 1.86 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.08 0.75 8.06 -2.39 -0.02 0.73 16 42 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.09 2.14 8.13 -2.39 -0.02 2.12 16 44 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 45 H 0.11 4.84 8.14 -2.39 -0.02 4.82 16 46 H 0.11 4.86 8.14 -2.40 -0.02 4.84 16 47 H 0.28 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -78.86 391.00 5.35 -73.50 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.91 Total: 16.80 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.50 Total: 7.20 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.67 Total: -72.18 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -0.24 Total: -63.30 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.48 kcal Total: -78.86 5.35 -73.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733437662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.350 kcal (2) G-P(sol) polarization free energy of solvation -78.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds