Wall clock time and date at job start Wed Apr 1 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 120.00552 * 2 1 4 4 H 1.48493 * 109.47168 * 240.00408 * 3 2 1 5 5 H 1.48502 * 109.46642 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46925 * 120.00029 * 3 2 1 7 7 C 1.38957 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00312 * 201.12687 * 7 2 1 9 9 N 1.37094 * 119.99899 * 21.12903 * 7 2 1 10 10 C 1.46508 * 120.00014 * 16.26083 * 9 7 2 11 11 C 1.50700 * 109.47057 * 264.14678 * 10 9 7 12 12 O 1.20831 * 119.99876 * 359.97438 * 11 10 9 13 13 O 1.34224 * 120.00027 * 180.02562 * 11 10 9 14 14 C 1.34777 * 120.00421 * 196.26378 * 9 7 2 15 15 O 1.21295 * 119.99566 * 359.97438 * 14 9 7 16 16 C 1.50697 * 120.00630 * 180.02562 * 14 9 7 17 17 C 1.52990 * 109.47386 * 179.97438 * 16 14 9 18 18 C 1.50697 * 109.47386 * 180.02562 * 17 16 14 19 19 O 1.21256 * 119.99839 * 359.97438 * 18 17 16 20 20 C 1.47165 * 120.00194 * 180.02562 * 18 17 16 21 21 C 1.39873 * 120.21867 * 359.97438 * 20 18 17 22 22 C 1.37726 * 119.75863 * 179.97438 * 21 20 18 23 23 C 1.38715 * 120.44725 * 0.02562 * 22 21 20 24 24 C 1.38426 * 120.12723 * 359.97438 * 23 22 21 25 25 C 1.38169 * 120.02232 * 359.97438 * 24 23 22 26 26 C 1.51397 * 109.73779 * 179.97438 * 24 23 22 27 27 C 1.54332 * 105.17708 * 342.78205 * 26 24 23 28 28 C 1.51438 * 130.18291 * 179.97438 * 23 22 21 29 29 H 0.97004 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46979 * 24.14681 * 10 9 7 31 31 H 1.08995 * 109.47117 * 144.14599 * 10 9 7 32 32 H 0.96701 * 117.00401 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.46944 * 59.99338 * 16 14 9 34 34 H 1.08996 * 109.46844 * 299.99933 * 16 14 9 35 35 H 1.09004 * 109.47366 * 59.99908 * 17 16 14 36 36 H 1.09003 * 109.47164 * 299.99611 * 17 16 14 37 37 H 1.07997 * 120.11429 * 359.70304 * 21 20 18 38 38 H 1.07997 * 119.77120 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.95817 * 179.97438 * 25 24 23 40 40 H 1.09004 * 110.30339 * 101.70139 * 26 24 23 41 41 H 1.09000 * 110.30510 * 223.85287 * 26 24 23 42 42 H 1.09011 * 110.81780 * 268.19537 * 27 26 24 43 43 H 1.08995 * 110.99502 * 144.73673 * 27 26 24 44 44 H 1.08999 * 110.29735 * 316.18360 * 28 23 22 45 45 H 1.08997 * 110.29832 * 78.32728 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0344 -1.2351 0.3365 9 7 1.3925 -2.3506 -0.4290 10 6 0.1547 -2.2697 -1.2086 11 6 -1.0291 -2.4271 -0.2894 12 8 -0.8565 -2.5906 0.8953 13 8 -2.2751 -2.3868 -0.7868 14 6 1.9251 -3.5527 -0.1331 15 8 2.9501 -3.6197 0.5119 16 6 1.2479 -4.8137 -0.6046 17 6 2.0516 -6.0292 -0.1384 18 6 1.3747 -7.2901 -0.6105 19 8 0.3503 -7.2232 -1.2557 20 6 1.9565 -8.6028 -0.2874 21 6 3.1378 -8.6853 0.4570 22 6 3.6736 -9.9187 0.7544 23 6 3.0500 -11.0792 0.3202 24 6 1.8807 -11.0056 -0.4170 25 6 1.3318 -9.7747 -0.7214 26 6 1.4070 -12.4008 -0.7651 27 6 2.6334 -13.3110 -0.5429 28 6 3.4389 -12.5296 0.5166 29 1 -0.4850 0.8401 0.0004 30 1 0.1016 -1.3017 -1.7068 31 1 0.1430 -3.0637 -1.9552 32 1 -3.0024 -2.4921 -0.1582 33 1 1.1923 -4.8110 -1.6932 34 1 0.2412 -4.8624 -0.1896 35 1 2.1076 -6.0321 0.9502 36 1 3.0582 -5.9803 -0.5539 37 1 3.6302 -7.7849 0.7936 38 1 4.5855 -9.9827 1.3295 39 1 0.4197 -9.7184 -1.2969 40 1 0.5910 -12.6984 -0.1066 41 1 1.0883 -12.4431 -1.8066 42 1 3.2070 -13.4197 -1.4634 43 1 2.3319 -14.2855 -0.1590 44 1 4.5083 -12.6601 0.3507 45 1 3.1676 -12.8615 1.5187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:27 Heat of formation + Delta-G solvation = -136.003629 kcal Electronic energy + Delta-G solvation = -29479.033210 eV Core-core repulsion = 25233.474503 eV Total energy + Delta-G solvation = -4245.558707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.55282 -39.53034 -39.00572 -38.03859 -35.73075 -35.27237 -34.51964 -32.51645 -31.69460 -31.64487 -29.68104 -27.72320 -27.67084 -26.19438 -24.30225 -22.56604 -22.08552 -21.12830 -21.07143 -19.20366 -18.67551 -17.18174 -17.07120 -16.80866 -16.21165 -15.98220 -15.78138 -15.70638 -15.23876 -15.19484 -14.81503 -14.43918 -14.14009 -13.97971 -13.78515 -13.67919 -13.32556 -13.21589 -12.80947 -12.54083 -12.33091 -12.17890 -11.88053 -11.81619 -11.61913 -11.55258 -11.54587 -11.37281 -11.18803 -10.98764 -10.90029 -10.76887 -10.48336 -10.34454 -10.27470 -9.63960 -9.58490 -9.04460 -9.03528 -8.75154 -8.53301 -7.92189 -6.45017 -3.89307 0.56443 1.18930 2.39714 3.16208 3.23675 3.27367 3.47628 3.61971 3.64924 3.85909 4.08109 4.19244 4.24248 4.26619 4.62797 4.74501 4.76609 4.82336 4.94712 5.02602 5.07350 5.22153 5.29572 5.33747 5.38211 5.44871 5.48702 5.51269 5.60389 5.73740 5.78693 5.79715 5.87098 5.91667 6.08116 6.16239 6.25676 6.29907 6.35031 6.37417 6.49107 6.60418 6.70637 7.50962 7.55156 7.61033 7.97464 8.35848 9.04625 9.08005 9.30734 9.83376 10.63804 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.002246 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.283159 B =12464.196728 C =13427.575655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.028 3.972 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.108 0.892 9 N -0.431 5.431 10 C 0.144 3.856 11 C 0.491 3.509 12 O -0.506 6.506 13 O -0.534 6.534 14 C 0.461 3.539 15 O -0.580 6.580 16 C -0.126 4.126 17 C -0.143 4.143 18 C 0.397 3.603 19 O -0.455 6.455 20 C -0.164 4.164 21 C -0.068 4.068 22 C -0.121 4.121 23 C -0.072 4.072 24 C -0.115 4.115 25 C -0.051 4.051 26 C -0.081 4.081 27 C -0.121 4.121 28 C -0.086 4.086 29 H 0.271 0.729 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.392 0.608 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 -21.447 -3.538 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.125 0.875 9 N -0.151 5.151 10 C 0.018 3.982 11 C 0.331 3.669 12 O -0.391 6.391 13 O -0.345 6.345 14 C 0.250 3.750 15 O -0.464 6.464 16 C -0.166 4.166 17 C -0.181 4.181 18 C 0.275 3.725 19 O -0.330 6.330 20 C -0.165 4.165 21 C -0.086 4.086 22 C -0.139 4.139 23 C -0.072 4.072 24 C -0.115 4.115 25 C -0.069 4.069 26 C -0.118 4.118 27 C -0.158 4.158 28 C -0.123 4.123 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.097 0.903 32 H 0.248 0.752 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.050 -21.270 -3.498 21.653 hybrid contribution -0.378 1.015 0.662 1.269 sum 1.672 -20.255 -2.836 20.521 Atomic orbital electron populations 1.69797 1.06052 1.27999 1.48375 1.25248 0.95328 1.00010 0.96858 0.85922 0.78956 0.80287 0.79118 1.19828 1.21047 1.19838 1.19672 0.97652 0.83361 1.42564 0.87452 1.43436 1.19593 1.05486 1.46564 1.20706 0.81349 1.04858 0.91325 1.23815 0.83174 0.70721 0.89176 1.90609 1.85623 1.45112 1.17774 1.84522 1.17390 1.86310 1.46232 1.19991 0.87333 0.84220 0.83444 1.90509 1.26186 1.86611 1.43049 1.21389 1.00226 0.92959 1.02047 1.21702 1.01034 0.91345 1.03980 1.22676 0.83859 0.89906 0.76091 1.90498 1.21970 1.89659 1.30882 1.20472 0.98033 0.94753 1.03257 1.21491 0.93955 0.98273 0.94923 1.20617 1.00702 0.91081 1.01521 1.20897 0.95068 0.95183 0.96037 1.20532 0.96419 0.94678 0.99917 1.20864 0.98953 0.90199 0.96861 1.21045 0.98303 0.90321 1.02171 1.22298 0.96144 0.98241 0.99134 1.21133 1.00810 0.90338 1.00015 0.91821 0.85309 0.90296 0.75168 0.89821 0.89896 0.87604 0.87595 0.84185 0.85542 0.85151 0.90136 0.90558 0.90860 0.90431 0.90404 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.29 9.25 55.50 0.51 -22.78 16 2 C 0.03 0.73 4.89 -17.47 -0.09 0.65 16 3 Si 0.93 20.51 29.60 -169.99 -5.03 15.48 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.31 -8.38 9.35 -14.93 -0.14 -8.52 16 8 H 0.11 3.07 7.36 -52.49 -0.39 2.68 16 9 N -0.43 -10.93 2.18 -116.09 -0.25 -11.18 16 10 C 0.14 3.20 4.97 -5.19 -0.03 3.17 16 11 C 0.49 11.17 5.87 36.01 0.21 11.38 16 12 O -0.51 -13.41 16.81 -18.75 -0.32 -13.73 16 13 O -0.53 -9.96 13.42 -39.24 -0.53 -10.48 16 14 C 0.46 11.12 7.42 -10.99 -0.08 11.04 16 15 O -0.58 -15.45 15.62 5.54 0.09 -15.36 16 16 C -0.13 -2.41 3.60 -27.89 -0.10 -2.51 16 17 C -0.14 -2.30 3.61 -27.89 -0.10 -2.40 16 18 C 0.40 6.00 7.12 -30.69 -0.22 5.79 16 19 O -0.45 -7.91 15.97 5.58 0.09 -7.82 16 20 C -0.16 -2.14 5.87 -105.11 -0.62 -2.76 16 21 C -0.07 -0.77 9.47 -39.16 -0.37 -1.14 16 22 C -0.12 -1.20 10.02 -39.59 -0.40 -1.60 16 23 C -0.07 -0.69 6.14 -104.01 -0.64 -1.33 16 24 C -0.12 -1.19 6.12 -104.24 -0.64 -1.83 16 25 C -0.05 -0.62 9.60 -39.06 -0.37 -0.99 16 26 C -0.08 -0.61 6.77 -26.84 -0.18 -0.79 16 27 C -0.12 -0.71 7.08 -25.33 -0.18 -0.89 16 28 C -0.09 -0.58 6.77 -26.82 -0.18 -0.76 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.13 2.94 6.34 -51.93 -0.33 2.61 16 31 H 0.08 1.45 6.68 -51.93 -0.35 1.10 16 32 H 0.39 5.67 9.10 45.56 0.41 6.08 16 33 H 0.08 1.45 7.37 -51.93 -0.38 1.07 16 34 H 0.08 1.66 7.48 -51.93 -0.39 1.27 16 35 H 0.11 1.71 8.05 -51.93 -0.42 1.30 16 36 H 0.11 1.59 8.04 -51.93 -0.42 1.17 16 37 H 0.14 1.44 7.06 -52.49 -0.37 1.07 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 1.57 7.64 -52.49 -0.40 1.17 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -34.84 379.20 -8.96 -43.80 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.12 Total: 9.86 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -4.12 Total: 6.50 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.26 Total: -33.96 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.67 Total: -47.40 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.84 -8.96 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.205 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds