Wall clock time and date at job start Wed Apr 1 2020 02:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 120.00552 * 2 1 4 4 H 1.48493 * 109.47168 * 240.00408 * 3 2 1 5 5 H 1.48502 * 109.46642 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46925 * 120.00029 * 3 2 1 7 7 C 1.38957 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00312 * 201.12687 * 7 2 1 9 9 N 1.37094 * 119.99899 * 21.12903 * 7 2 1 10 10 C 1.46508 * 120.00014 * 16.26083 * 9 7 2 11 11 C 1.50700 * 109.47057 * 264.14678 * 10 9 7 12 12 O 1.20831 * 119.99876 * 359.97438 * 11 10 9 13 13 O 1.34224 * 120.00027 * 180.02562 * 11 10 9 14 14 C 1.34777 * 120.00421 * 196.26378 * 9 7 2 15 15 O 1.21295 * 119.99566 * 359.97438 * 14 9 7 16 16 C 1.50697 * 120.00630 * 180.02562 * 14 9 7 17 17 C 1.52990 * 109.47386 * 179.97438 * 16 14 9 18 18 C 1.50697 * 109.47386 * 180.02562 * 17 16 14 19 19 O 1.21256 * 119.99839 * 359.97438 * 18 17 16 20 20 C 1.47165 * 120.00194 * 180.02562 * 18 17 16 21 21 C 1.39873 * 120.21867 * 359.97438 * 20 18 17 22 22 C 1.37726 * 119.75863 * 179.97438 * 21 20 18 23 23 C 1.38715 * 120.44725 * 0.02562 * 22 21 20 24 24 C 1.38426 * 120.12723 * 359.97438 * 23 22 21 25 25 C 1.38169 * 120.02232 * 359.97438 * 24 23 22 26 26 C 1.51397 * 109.73779 * 179.97438 * 24 23 22 27 27 C 1.54332 * 105.17708 * 342.78205 * 26 24 23 28 28 C 1.51438 * 130.18291 * 179.97438 * 23 22 21 29 29 H 0.97004 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46979 * 24.14681 * 10 9 7 31 31 H 1.08995 * 109.47117 * 144.14599 * 10 9 7 32 32 H 0.96701 * 117.00401 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.46944 * 59.99338 * 16 14 9 34 34 H 1.08996 * 109.46844 * 299.99933 * 16 14 9 35 35 H 1.09004 * 109.47366 * 59.99908 * 17 16 14 36 36 H 1.09003 * 109.47164 * 299.99611 * 17 16 14 37 37 H 1.07997 * 120.11429 * 359.70304 * 21 20 18 38 38 H 1.07997 * 119.77120 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.95817 * 179.97438 * 25 24 23 40 40 H 1.09004 * 110.30339 * 101.70139 * 26 24 23 41 41 H 1.09000 * 110.30510 * 223.85287 * 26 24 23 42 42 H 1.09011 * 110.81780 * 268.19537 * 27 26 24 43 43 H 1.08995 * 110.99502 * 144.73673 * 27 26 24 44 44 H 1.08999 * 110.29735 * 316.18360 * 28 23 22 45 45 H 1.08997 * 110.29832 * 78.32728 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0344 -1.2351 0.3365 9 7 1.3925 -2.3506 -0.4290 10 6 0.1547 -2.2697 -1.2086 11 6 -1.0291 -2.4271 -0.2894 12 8 -0.8565 -2.5906 0.8953 13 8 -2.2751 -2.3868 -0.7868 14 6 1.9251 -3.5527 -0.1331 15 8 2.9501 -3.6197 0.5119 16 6 1.2479 -4.8137 -0.6046 17 6 2.0516 -6.0292 -0.1384 18 6 1.3747 -7.2901 -0.6105 19 8 0.3503 -7.2232 -1.2557 20 6 1.9565 -8.6028 -0.2874 21 6 3.1378 -8.6853 0.4570 22 6 3.6736 -9.9187 0.7544 23 6 3.0500 -11.0792 0.3202 24 6 1.8807 -11.0056 -0.4170 25 6 1.3318 -9.7747 -0.7214 26 6 1.4070 -12.4008 -0.7651 27 6 2.6334 -13.3110 -0.5429 28 6 3.4389 -12.5296 0.5166 29 1 -0.4850 0.8401 0.0004 30 1 0.1016 -1.3017 -1.7068 31 1 0.1430 -3.0637 -1.9552 32 1 -3.0024 -2.4921 -0.1582 33 1 1.1923 -4.8110 -1.6932 34 1 0.2412 -4.8624 -0.1896 35 1 2.1076 -6.0321 0.9502 36 1 3.0582 -5.9803 -0.5539 37 1 3.6302 -7.7849 0.7936 38 1 4.5855 -9.9827 1.3295 39 1 0.4197 -9.7184 -1.2969 40 1 0.5910 -12.6984 -0.1066 41 1 1.0883 -12.4431 -1.8066 42 1 3.2070 -13.4197 -1.4634 43 1 2.3319 -14.2855 -0.1590 44 1 4.5083 -12.6601 0.3507 45 1 3.1676 -12.8615 1.5187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:26 Heat of formation + Delta-G solvation = -156.401565 kcal Electronic energy + Delta-G solvation = -29479.917731 eV Core-core repulsion = 25233.474503 eV Total energy + Delta-G solvation = -4246.443228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54562 -41.18778 -40.26278 -39.74406 -37.07795 -36.48525 -36.39265 -34.12827 -33.48618 -32.48071 -30.59061 -29.52154 -28.37236 -27.72227 -25.91163 -23.60918 -23.01188 -22.79883 -21.71437 -20.66252 -20.08918 -19.05133 -18.74126 -18.31193 -17.59021 -17.47948 -16.84261 -16.73684 -16.51558 -16.34539 -16.22807 -15.96182 -15.85187 -15.43273 -15.33661 -14.59031 -14.26274 -14.19351 -14.07526 -13.72953 -13.64920 -13.47396 -13.43406 -13.33334 -13.00233 -12.83600 -12.62378 -12.47203 -12.38360 -12.27182 -12.14358 -12.06813 -12.03611 -11.82447 -11.67774 -11.54233 -10.96987 -10.80795 -10.47519 -9.89237 -9.88250 -9.54277 -8.43949 -5.96000 -0.38580 0.36593 1.34366 1.38076 1.43123 1.54105 1.67789 1.84384 2.24431 2.51844 2.72056 2.74088 3.02111 3.16401 3.51064 3.58577 3.70310 3.95757 4.00138 4.06007 4.12728 4.18880 4.24831 4.26397 4.30764 4.45254 4.58682 4.69566 4.71861 4.75402 4.84919 4.87194 4.90184 4.93967 4.96103 5.03771 5.11983 5.19592 5.32097 5.33368 5.41808 5.45191 5.56427 5.90899 5.92124 5.99055 6.36554 6.43557 7.08440 7.27942 7.42721 7.89830 8.62798 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.002246 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.283159 B =12464.196728 C =13427.575655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.004 4.004 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.341 4.341 8 H 0.083 0.917 9 N -0.445 5.445 10 C 0.141 3.859 11 C 0.497 3.503 12 O -0.550 6.550 13 O -0.518 6.518 14 C 0.451 3.549 15 O -0.614 6.614 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.406 3.594 19 O -0.484 6.484 20 C -0.186 4.186 21 C -0.074 4.074 22 C -0.125 4.125 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.064 4.064 26 C -0.084 4.084 27 C -0.116 4.116 28 C -0.086 4.086 29 H 0.275 0.725 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.413 0.587 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -23.157 -4.054 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.205 4.205 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.164 5.164 10 C 0.016 3.984 11 C 0.340 3.660 12 O -0.439 6.439 13 O -0.331 6.331 14 C 0.242 3.758 15 O -0.501 6.501 16 C -0.154 4.154 17 C -0.176 4.176 18 C 0.287 3.713 19 O -0.362 6.362 20 C -0.187 4.187 21 C -0.092 4.092 22 C -0.142 4.142 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.083 4.083 26 C -0.121 4.121 27 C -0.153 4.153 28 C -0.122 4.122 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.273 0.727 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.346 -22.991 -4.041 23.461 hybrid contribution -0.535 1.481 0.846 1.788 sum 1.811 -21.510 -3.195 21.821 Atomic orbital electron populations 1.69882 1.06910 1.28811 1.47803 1.26025 0.96174 1.02539 0.95754 0.84971 0.77818 0.76336 0.79024 1.18582 1.19975 1.20606 1.19633 0.97318 0.85114 1.44755 0.89865 1.43617 1.20563 1.05396 1.46817 1.20850 0.80219 1.05888 0.91482 1.23838 0.84285 0.69501 0.88414 1.90595 1.86459 1.47344 1.19546 1.84449 1.16776 1.85420 1.46407 1.20799 0.86941 0.85332 0.82759 1.90467 1.27739 1.87312 1.44551 1.21297 0.99451 0.91581 1.03092 1.21661 1.01279 0.90799 1.03813 1.22652 0.83140 0.90403 0.75115 1.90480 1.23174 1.90006 1.32564 1.20306 0.99316 0.93740 1.05352 1.21626 0.93465 0.99399 0.94679 1.20925 1.01428 0.90582 1.01309 1.21384 0.94330 0.96787 0.94514 1.20902 0.96719 0.95241 0.99632 1.20926 0.99042 0.90935 0.97365 1.21160 0.99402 0.88880 1.02624 1.22333 0.95084 0.98648 0.99212 1.21252 1.01886 0.88104 1.00986 0.91543 0.85987 0.86552 0.72717 0.87815 0.90748 0.87993 0.86527 0.83700 0.83104 0.85881 0.89372 0.90142 0.90454 0.88342 0.88904 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.18 9.25 21.67 0.20 -46.98 16 2 C 0.00 -0.19 4.89 84.93 0.42 0.22 16 3 Si 1.00 42.15 29.60 68.60 2.03 44.19 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.34 -19.22 9.35 84.04 0.79 -18.43 16 8 H 0.08 4.98 7.36 -2.91 -0.02 4.95 16 9 N -0.44 -23.01 2.18 -639.58 -1.39 -24.41 16 10 C 0.14 6.25 4.97 85.63 0.43 6.67 16 11 C 0.50 22.53 5.87 71.24 0.42 22.95 16 12 O -0.55 -29.59 16.81 21.95 0.37 -29.22 16 13 O -0.52 -18.61 13.42 -51.36 -0.69 -19.30 16 14 C 0.45 22.33 7.42 87.66 0.65 22.98 16 15 O -0.61 -33.92 15.62 -3.08 -0.05 -33.97 16 16 C -0.11 -4.42 3.60 29.84 0.11 -4.32 16 17 C -0.14 -4.52 3.61 29.84 0.11 -4.42 16 18 C 0.41 12.54 7.12 28.03 0.20 12.74 16 19 O -0.48 -17.19 15.97 -2.95 -0.05 -17.23 16 20 C -0.19 -4.91 5.87 -20.18 -0.12 -5.02 16 21 C -0.07 -1.63 9.47 22.54 0.21 -1.42 16 22 C -0.12 -2.25 10.02 22.26 0.22 -2.03 16 23 C -0.07 -1.20 6.14 -19.47 -0.12 -1.32 16 24 C -0.12 -2.43 6.12 -19.61 -0.12 -2.55 16 25 C -0.06 -1.58 9.60 22.61 0.22 -1.36 16 26 C -0.08 -1.08 6.77 30.52 0.21 -0.87 16 27 C -0.12 -0.99 7.08 31.50 0.22 -0.77 16 28 C -0.09 -0.87 6.77 30.54 0.21 -0.66 16 29 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 30 H 0.12 5.56 6.34 -2.39 -0.02 5.55 16 31 H 0.12 4.16 6.68 -2.39 -0.02 4.14 16 32 H 0.41 11.27 9.10 -74.06 -0.67 10.59 16 33 H 0.10 3.55 7.37 -2.38 -0.02 3.54 16 34 H 0.07 3.03 7.48 -2.39 -0.02 3.01 16 35 H 0.10 3.42 8.05 -2.38 -0.02 3.40 16 36 H 0.12 3.54 8.04 -2.39 -0.02 3.52 16 37 H 0.15 2.96 7.06 -2.91 -0.02 2.94 16 38 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.12 3.07 7.64 -2.91 -0.02 3.05 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -77.01 379.20 4.83 -72.18 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.37 Total: 32.34 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 4.04 Total: 22.41 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -1.19 Total: -71.39 kcal Atomic # 8 Polarization: -99.31 SS G_CDS: -0.42 Total: -99.72 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.19 kcal Total: -77.01 4.83 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.222 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds