Wall clock time and date at job start Wed Apr 1 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47267 * 2 1 4 4 C 1.53002 * 109.47136 * 239.99612 * 2 1 3 5 5 O 1.45210 * 109.46957 * 120.00178 * 2 1 3 6 6 C 1.34635 * 116.99983 * 59.99762 * 5 2 1 7 7 O 1.21512 * 120.00178 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99989 * 180.02562 * 6 5 2 9 9 C 1.47430 * 125.64817 * 0.03589 * 8 6 5 10 10 C 1.54909 * 104.83106 * 204.09645 * 9 8 6 11 11 C 1.55149 * 101.58264 * 322.99094 * 10 9 8 12 12 H 1.08996 * 110.87647 * 277.06897 * 11 10 9 13 13 C 1.53000 * 110.72101 * 153.86789 * 11 10 9 14 14 O 1.45198 * 109.47557 * 180.02562 * 13 11 10 15 15 C 1.34231 * 117.00272 * 180.02562 * 14 13 11 16 16 O 1.20826 * 119.99913 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00182 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47406 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47364 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46883 * 120.00278 * 23 21 19 26 26 H 1.48497 * 109.46870 * 240.00088 * 23 21 19 27 27 C 1.47020 * 125.64943 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.47214 * 300.00094 * 1 2 3 29 29 H 1.08997 * 109.46879 * 59.99557 * 1 2 3 30 30 H 1.08998 * 109.47641 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46632 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47318 * 299.99639 * 3 2 1 33 33 H 1.09006 * 109.46897 * 60.00096 * 3 2 1 34 34 H 1.08998 * 109.47028 * 300.00587 * 4 2 1 35 35 H 1.08997 * 109.46558 * 60.00634 * 4 2 1 36 36 H 1.08998 * 109.47012 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.36595 * 322.93791 * 9 8 6 38 38 H 1.08999 * 110.36306 * 85.25476 * 9 8 6 39 39 H 1.09003 * 110.99818 * 204.91700 * 10 9 8 40 40 H 1.08998 * 111.00275 * 81.07271 * 10 9 8 41 41 H 1.08998 * 109.47506 * 60.01867 * 13 11 10 42 42 H 1.09008 * 109.47024 * 300.02906 * 13 11 10 43 43 H 1.09005 * 109.46836 * 60.00110 * 17 15 14 44 44 H 1.08996 * 109.47837 * 300.00533 * 17 15 14 45 45 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 46 46 H 1.08996 * 109.88755 * 59.55408 * 27 8 6 47 47 H 1.09003 * 109.88363 * 298.39070 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6655 2.4172 9 6 2.9157 -2.1397 3.5020 10 6 3.5970 -3.3893 4.1136 11 6 2.4576 -4.4388 4.0275 12 1 1.7755 -4.3418 4.8721 13 6 3.0309 -5.8556 3.9572 14 8 1.9434 -6.8144 3.8769 15 6 2.2790 -8.1123 3.8089 16 8 3.4430 -8.4365 3.8157 17 6 1.2042 -9.1651 3.7239 18 16 1.9693 -10.8036 3.6448 19 6 0.5265 -11.8109 3.5538 20 1 -0.4522 -11.3542 3.5584 21 6 0.6478 -13.1914 3.4750 22 7 1.8404 -13.7482 3.4738 23 14 -0.8819 -14.2593 3.3792 24 1 -2.0903 -13.3966 3.4035 25 1 -0.8596 -15.0439 2.1185 26 1 -0.9116 -15.1865 4.5388 27 6 1.7482 -4.0711 2.7072 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1391 36 1 3.1300 -0.7217 -1.2490 37 1 3.6649 -1.4573 3.1007 38 1 2.3049 -1.6358 4.2511 39 1 3.8851 -3.2095 5.1494 40 1 4.4569 -3.6962 3.5182 41 1 3.6237 -6.0525 4.8505 42 1 3.6631 -5.9484 3.0741 43 1 0.6047 -9.0008 2.8285 44 1 0.5654 -9.1042 4.6050 45 1 2.6347 -13.1937 3.5239 46 1 2.1121 -4.7078 1.9008 47 1 0.6707 -4.1912 2.8196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740579226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:32 Heat of formation + Delta-G solvation = -175.540509 kcal Electronic energy + Delta-G solvation = -27643.681872 eV Core-core repulsion = 23531.852668 eV Total energy + Delta-G solvation = -4111.829203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14633 -40.25523 -39.07421 -36.94929 -36.18331 -34.45783 -32.68950 -32.60157 -30.27084 -29.52295 -27.79038 -27.72587 -26.61468 -24.93201 -23.83199 -22.11121 -21.09384 -20.69932 -19.71474 -18.45350 -18.21212 -17.44201 -17.20344 -16.78669 -16.47913 -16.09313 -15.52635 -15.40167 -14.73841 -14.59020 -14.20142 -14.13504 -13.89126 -13.68171 -13.50132 -13.19166 -13.01794 -12.87516 -12.57926 -12.48123 -12.38346 -12.26809 -12.25912 -12.21614 -12.06695 -11.78330 -11.75621 -11.62900 -11.52194 -11.17022 -10.93131 -10.70327 -10.57379 -10.31905 -10.22850 -10.16367 -9.69866 -9.09480 -9.07114 -8.34128 -6.79092 -6.68801 -4.09139 1.73202 2.43673 2.51674 2.55696 3.25080 3.34814 3.38435 3.50517 3.52441 4.01276 4.08660 4.18062 4.33340 4.34827 4.38586 4.52598 4.77598 4.79200 4.85583 5.05366 5.08447 5.11587 5.15022 5.16342 5.16393 5.22379 5.25252 5.31212 5.38206 5.38707 5.41438 5.46791 5.49299 5.59340 5.61677 5.64155 5.75824 5.83544 5.94231 5.94398 5.99774 6.14143 6.52765 7.12784 7.88249 8.01816 8.03641 8.43479 9.19471 10.75054 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.001793 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.364915 B =15612.846153 C =16575.494058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.667 3.333 7 O -0.563 6.563 8 N -0.607 5.607 9 C 0.106 3.894 10 C -0.126 4.126 11 C -0.098 4.098 12 H 0.102 0.898 13 C 0.076 3.924 14 O -0.359 6.359 15 C 0.480 3.520 16 O -0.488 6.488 17 C -0.107 4.107 18 S -0.115 6.115 19 C -0.607 4.607 20 H 0.070 0.930 21 C 0.037 3.963 22 N -0.883 5.883 23 Si 1.091 2.909 24 H -0.287 1.287 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.132 3.868 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.278 0.722 46 H 0.076 0.924 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 32.323 -1.862 32.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.422 3.578 7 O -0.452 6.452 8 N -0.348 5.348 9 C -0.017 4.017 10 C -0.164 4.164 11 C -0.117 4.117 12 H 0.120 0.880 13 C 0.001 3.999 14 O -0.277 6.277 15 C 0.321 3.679 16 O -0.374 6.374 17 C -0.255 4.255 18 S 0.111 5.889 19 C -0.755 4.755 20 H 0.089 0.911 21 C -0.174 4.174 22 N -0.517 5.517 23 Si 0.917 3.083 24 H -0.213 1.213 25 H -0.208 1.208 26 H -0.208 1.208 27 C 0.011 3.989 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.900 30.354 -2.347 30.503 hybrid contribution -0.849 2.007 0.052 2.180 sum 1.051 32.361 -2.294 32.459 Atomic orbital electron populations 1.22517 0.93917 1.05164 1.02483 1.22097 0.94451 0.91485 0.82094 1.21854 1.02227 0.92458 1.03138 1.22522 1.01557 1.03607 0.96444 1.86291 1.71564 1.23403 1.46482 1.17461 0.78815 0.80452 0.81066 1.90933 1.41133 1.70442 1.42651 1.47154 1.53538 1.12747 1.21396 1.22337 0.93663 0.96552 0.89157 1.22827 0.97428 0.93469 1.02680 1.22295 0.98235 0.92810 0.98389 0.87954 1.22953 0.88299 0.85417 1.03244 1.86503 1.39549 1.17092 1.84583 1.23261 0.90259 0.81956 0.72421 1.90673 1.20709 1.81704 1.44284 1.23059 0.99085 0.96568 1.06816 1.84832 1.13769 0.93321 1.96987 1.23746 0.92502 0.95656 1.63619 0.91134 1.26096 1.03503 0.94966 0.92842 1.70751 0.98458 1.39281 1.43246 0.83229 0.72768 0.74901 0.77383 1.21263 1.20824 1.20815 1.21977 1.01029 0.79134 0.96763 0.92201 0.91063 0.89339 0.91482 0.90071 0.91494 0.89326 0.91057 0.92171 0.89833 0.90836 0.88729 0.89753 0.90325 0.90787 0.87570 0.87586 0.90973 0.90574 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 2 C 0.14 1.14 1.13 -90.62 -0.10 1.04 16 3 C -0.14 -0.77 8.85 37.16 0.33 -0.45 16 4 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 5 O -0.36 -3.72 9.42 -40.31 -0.38 -4.10 16 6 C 0.67 7.98 7.93 54.05 0.43 8.40 16 7 O -0.56 -8.14 12.21 -19.28 -0.24 -8.38 16 8 N -0.61 -6.09 3.33 -176.30 -0.59 -6.68 16 9 C 0.11 0.70 6.92 -2.53 -0.02 0.68 16 10 C -0.13 -0.73 6.53 -24.59 -0.16 -0.89 16 11 C -0.10 -0.80 3.24 -88.79 -0.29 -1.08 16 12 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 13 C 0.08 0.83 4.77 37.16 0.18 1.01 16 14 O -0.36 -5.25 10.07 -39.26 -0.40 -5.65 16 15 C 0.48 8.85 7.97 36.00 0.29 9.14 16 16 O -0.49 -10.33 15.61 -18.75 -0.29 -10.62 16 17 C -0.11 -2.15 6.27 36.00 0.23 -1.93 16 18 S -0.12 -3.03 19.60 -107.50 -2.11 -5.14 16 19 C -0.61 -17.24 9.50 30.94 0.29 -16.94 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 22 N -0.88 -27.09 13.67 55.49 0.76 -26.33 16 23 Si 1.09 24.78 29.92 -169.99 -5.09 19.70 16 24 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 C 0.13 1.35 6.32 -3.06 -0.02 1.33 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.50 8.04 -51.93 -0.42 0.09 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 41 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 42 H 0.07 0.84 8.06 -51.92 -0.42 0.42 16 43 H 0.11 2.01 8.14 -51.91 -0.42 1.59 16 44 H 0.11 1.98 8.14 -51.92 -0.42 1.55 16 45 H 0.28 8.67 7.13 -40.82 -0.29 8.38 16 46 H 0.08 0.88 7.76 -51.93 -0.40 0.48 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -34.97 399.39 -8.31 -43.28 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.68 Total: -0.88 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 1.68 Total: -1.23 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.17 Total: -33.01 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.30 Total: -28.74 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.09 Total: 19.70 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.11 Total: -5.14 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.97 -8.31 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740579226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.262 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds