Wall clock time and date at job start Wed Apr 1 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47267 * 2 1 4 4 C 1.53002 * 109.47136 * 239.99612 * 2 1 3 5 5 O 1.45210 * 109.46957 * 120.00178 * 2 1 3 6 6 C 1.34635 * 116.99983 * 59.99762 * 5 2 1 7 7 O 1.21512 * 120.00178 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99989 * 180.02562 * 6 5 2 9 9 C 1.47430 * 125.64817 * 0.03589 * 8 6 5 10 10 C 1.54909 * 104.83106 * 204.09645 * 9 8 6 11 11 C 1.55149 * 101.58264 * 322.99094 * 10 9 8 12 12 H 1.08996 * 110.87647 * 277.06897 * 11 10 9 13 13 C 1.53000 * 110.72101 * 153.86789 * 11 10 9 14 14 O 1.45198 * 109.47557 * 180.02562 * 13 11 10 15 15 C 1.34231 * 117.00272 * 180.02562 * 14 13 11 16 16 O 1.20826 * 119.99913 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00182 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47406 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47364 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46883 * 120.00278 * 23 21 19 26 26 H 1.48497 * 109.46870 * 240.00088 * 23 21 19 27 27 C 1.47020 * 125.64943 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.47214 * 300.00094 * 1 2 3 29 29 H 1.08997 * 109.46879 * 59.99557 * 1 2 3 30 30 H 1.08998 * 109.47641 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46632 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47318 * 299.99639 * 3 2 1 33 33 H 1.09006 * 109.46897 * 60.00096 * 3 2 1 34 34 H 1.08998 * 109.47028 * 300.00587 * 4 2 1 35 35 H 1.08997 * 109.46558 * 60.00634 * 4 2 1 36 36 H 1.08998 * 109.47012 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.36595 * 322.93791 * 9 8 6 38 38 H 1.08999 * 110.36306 * 85.25476 * 9 8 6 39 39 H 1.09003 * 110.99818 * 204.91700 * 10 9 8 40 40 H 1.08998 * 111.00275 * 81.07271 * 10 9 8 41 41 H 1.08998 * 109.47506 * 60.01867 * 13 11 10 42 42 H 1.09008 * 109.47024 * 300.02906 * 13 11 10 43 43 H 1.09005 * 109.46836 * 60.00110 * 17 15 14 44 44 H 1.08996 * 109.47837 * 300.00533 * 17 15 14 45 45 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 46 46 H 1.08996 * 109.88755 * 59.55408 * 27 8 6 47 47 H 1.09003 * 109.88363 * 298.39070 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6655 2.4172 9 6 2.9157 -2.1397 3.5020 10 6 3.5970 -3.3893 4.1136 11 6 2.4576 -4.4388 4.0275 12 1 1.7755 -4.3418 4.8721 13 6 3.0309 -5.8556 3.9572 14 8 1.9434 -6.8144 3.8769 15 6 2.2790 -8.1123 3.8089 16 8 3.4430 -8.4365 3.8157 17 6 1.2042 -9.1651 3.7239 18 16 1.9693 -10.8036 3.6448 19 6 0.5265 -11.8109 3.5538 20 1 -0.4522 -11.3542 3.5584 21 6 0.6478 -13.1914 3.4750 22 7 1.8404 -13.7482 3.4738 23 14 -0.8819 -14.2593 3.3792 24 1 -2.0903 -13.3966 3.4035 25 1 -0.8596 -15.0439 2.1185 26 1 -0.9116 -15.1865 4.5388 27 6 1.7482 -4.0711 2.7072 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1391 36 1 3.1300 -0.7217 -1.2490 37 1 3.6649 -1.4573 3.1007 38 1 2.3049 -1.6358 4.2511 39 1 3.8851 -3.2095 5.1494 40 1 4.4569 -3.6962 3.5182 41 1 3.6237 -6.0525 4.8505 42 1 3.6631 -5.9484 3.0741 43 1 0.6047 -9.0008 2.8285 44 1 0.5654 -9.1042 4.6050 45 1 2.6347 -13.1937 3.5239 46 1 2.1121 -4.7078 1.9008 47 1 0.6707 -4.1912 2.8196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740579226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:32 Heat of formation + Delta-G solvation = -196.498232 kcal Electronic energy + Delta-G solvation = -27644.590667 eV Core-core repulsion = 23531.852668 eV Total energy + Delta-G solvation = -4112.737999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97347 -41.57125 -39.86647 -37.91519 -37.39596 -35.18603 -34.78773 -33.52172 -31.58613 -30.43330 -28.39923 -28.31004 -27.60200 -27.07304 -24.61271 -22.83482 -22.41052 -21.45638 -20.53377 -20.42083 -19.04950 -18.74249 -18.21457 -17.64613 -17.59082 -17.40663 -16.64005 -16.28671 -16.15102 -15.73723 -15.47013 -15.12709 -14.90178 -14.69071 -14.48956 -14.43466 -14.17440 -14.03587 -13.78337 -13.55214 -13.36677 -13.29639 -13.05583 -12.92826 -12.89028 -12.77243 -12.59716 -12.49387 -12.39055 -12.25797 -11.93627 -11.83235 -11.66300 -11.64824 -11.63018 -11.43114 -11.16663 -11.13803 -10.41159 -9.88415 -8.95530 -8.94143 -6.32638 0.86808 0.97579 1.02900 1.51182 1.61875 1.66409 1.73478 1.80147 2.29969 2.82812 2.99834 3.06912 3.32433 3.40321 3.51821 3.72663 3.77015 3.90005 3.92213 4.02830 4.09795 4.18222 4.26986 4.30972 4.37215 4.43304 4.47184 4.58266 4.58686 4.69322 4.73593 4.74656 4.81596 4.85454 4.86247 4.95383 5.06270 5.13799 5.16097 5.25029 5.25574 5.32012 5.41701 5.64013 6.12942 6.32452 6.59163 7.01901 7.17951 8.48244 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.001793 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.364915 B =15612.846153 C =16575.494058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.361 6.361 6 C 0.659 3.341 7 O -0.597 6.597 8 N -0.609 5.609 9 C 0.102 3.898 10 C -0.114 4.114 11 C -0.085 4.085 12 H 0.120 0.880 13 C 0.070 3.930 14 O -0.349 6.349 15 C 0.490 3.510 16 O -0.520 6.520 17 C -0.091 4.091 18 S -0.182 6.182 19 C -0.615 4.615 20 H 0.077 0.923 21 C -0.016 4.016 22 N -0.911 5.911 23 Si 1.141 2.859 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.129 3.871 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.262 0.738 46 H 0.054 0.946 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 34.836 -1.007 34.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.238 4.238 5 O -0.275 6.275 6 C 0.414 3.586 7 O -0.488 6.488 8 N -0.350 5.350 9 C -0.019 4.019 10 C -0.152 4.152 11 C -0.104 4.104 12 H 0.138 0.862 13 C -0.004 4.004 14 O -0.266 6.266 15 C 0.333 3.667 16 O -0.408 6.408 17 C -0.240 4.240 18 S 0.045 5.955 19 C -0.762 4.762 20 H 0.096 0.904 21 C -0.220 4.220 22 N -0.547 5.547 23 Si 0.959 3.041 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.198 1.198 27 C 0.008 3.992 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.144 0.856 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.137 32.930 -1.470 32.982 hybrid contribution -0.585 1.423 -0.242 1.557 sum 0.553 34.353 -1.712 34.400 Atomic orbital electron populations 1.22467 0.94078 1.03423 1.03707 1.22448 0.94566 0.92861 0.81362 1.21868 1.02475 0.90211 1.04444 1.22478 1.01630 1.02010 0.97670 1.86303 1.71448 1.22455 1.47335 1.17726 0.78676 0.80965 0.81204 1.90918 1.42687 1.71220 1.44023 1.47293 1.53482 1.12598 1.21605 1.22592 0.93705 0.97115 0.88460 1.22868 0.96187 0.91682 1.04489 1.22271 0.99319 0.91267 0.97527 0.86224 1.23326 0.87696 0.85781 1.03628 1.86477 1.40841 1.15664 1.83659 1.22813 0.89070 0.82998 0.71842 1.90669 1.21727 1.82450 1.45962 1.22917 0.99362 0.93258 1.08440 1.84965 1.15358 0.97984 1.97201 1.24080 0.93092 0.96285 1.62783 0.90431 1.27807 1.05550 0.96994 0.91600 1.70869 0.98888 1.39214 1.45689 0.82648 0.69749 0.73789 0.77897 1.18803 1.20039 1.19845 1.21945 1.00655 0.79326 0.97295 0.91713 0.89080 0.92466 0.91081 0.88020 0.90922 0.92538 0.89047 0.91926 0.88955 0.89112 0.85640 0.89836 0.89092 0.91346 0.86157 0.85631 0.92704 0.92746 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 2 C 0.12 1.97 1.13 -10.79 -0.01 1.96 16 3 C -0.13 -1.17 8.85 71.98 0.64 -0.53 16 4 C -0.18 -3.05 8.37 71.98 0.60 -2.45 16 5 O -0.36 -7.17 9.42 -55.44 -0.52 -7.70 16 6 C 0.66 15.94 7.93 129.79 1.03 16.97 16 7 O -0.60 -18.21 12.21 19.80 0.24 -17.97 16 8 N -0.61 -11.83 3.33 -942.10 -3.13 -14.96 16 9 C 0.10 1.11 6.92 86.85 0.60 1.71 16 10 C -0.11 -0.97 6.53 31.98 0.21 -0.76 16 11 C -0.08 -1.20 3.24 -9.61 -0.03 -1.23 16 12 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 13 C 0.07 1.43 4.77 71.98 0.34 1.78 16 14 O -0.35 -9.78 10.07 -51.42 -0.52 -10.29 16 15 C 0.49 17.82 7.97 71.23 0.57 18.39 16 16 O -0.52 -22.07 15.61 21.96 0.34 -21.73 16 17 C -0.09 -3.61 6.27 71.23 0.45 -3.16 16 18 S -0.18 -9.73 19.60 -56.49 -1.11 -10.84 16 19 C -0.62 -34.96 9.50 67.96 0.65 -34.32 16 20 H 0.08 4.17 7.80 -2.91 -0.02 4.14 16 21 C -0.02 -0.92 5.49 84.86 0.47 -0.45 16 22 N -0.91 -56.94 13.67 21.65 0.30 -56.65 16 23 Si 1.14 49.04 29.92 68.60 2.05 51.09 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.13 2.60 6.32 86.73 0.55 3.15 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.06 1.35 5.88 -2.39 -0.01 1.33 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 0.88 8.04 -2.39 -0.02 0.86 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 0.77 8.05 -2.39 -0.02 0.76 16 41 H 0.09 1.72 8.13 -2.39 -0.02 1.70 16 42 H 0.07 1.52 8.06 -2.38 -0.02 1.50 16 43 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 44 H 0.13 4.50 8.14 -2.40 -0.02 4.48 16 45 H 0.26 16.93 7.13 -92.71 -0.66 16.27 16 46 H 0.05 1.31 7.76 -2.39 -0.02 1.30 16 47 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -78.90 399.39 5.37 -73.53 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.06 Total: 16.78 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.66 Total: -1.26 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -2.84 Total: -71.61 kcal Atomic # 8 Polarization: -57.24 SS G_CDS: -0.46 Total: -57.69 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.05 Total: 51.09 kcal Atomic # 16 Polarization: -9.73 SS G_CDS: -1.11 Total: -10.84 kcal Total: -78.90 5.37 -73.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740579226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.970 kcal (2) G-P(sol) polarization free energy of solvation -78.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds