Wall clock time and date at job start Wed Apr 1 2020 03:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33591 * 118.46624 * 2 1 4 4 C 1.41554 * 118.79363 * 0.38614 * 3 2 1 5 5 O 1.21671 * 120.00119 * 100.40480 * 4 3 2 6 6 O 1.34926 * 120.00316 * 280.67369 * 4 3 2 7 7 C 1.42903 * 117.00483 * 179.72701 * 6 4 3 8 8 C 1.50700 * 109.47176 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99999 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99499 * 179.97438 * 8 7 6 11 11 C 1.37134 * 120.00157 * 5.59831 * 10 8 7 12 12 H 1.07998 * 120.00485 * 336.81466 * 11 10 8 13 13 C 1.38898 * 119.99772 * 156.81644 * 11 10 8 14 14 N 1.31419 * 119.99992 * 356.07033 * 13 11 10 15 15 Si 1.86798 * 119.99753 * 176.07260 * 13 11 10 16 16 H 1.48505 * 109.47348 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47211 * 120.00174 * 15 13 11 18 18 H 1.48502 * 109.47046 * 240.00107 * 15 13 11 19 19 C 1.39792 * 119.99761 * 185.59167 * 10 8 7 20 20 C 1.38965 * 120.07451 * 106.28369 * 19 10 8 21 21 C 1.38079 * 119.91839 * 179.79149 * 20 19 10 22 22 C 1.38305 * 120.07963 * 0.46809 * 21 20 19 23 23 C 1.38307 * 120.15575 * 359.78631 * 22 21 20 24 24 C 1.38075 * 120.07828 * 359.97438 * 23 22 21 25 25 C 1.50419 * 122.40742 * 180.11376 * 3 2 1 26 26 C 1.53214 * 109.55937 * 342.60903 * 25 3 2 27 27 C 1.53476 * 108.26013 * 47.36346 * 26 25 3 28 28 O 1.34299 * 118.46619 * 180.26449 * 2 1 3 29 29 H 1.08997 * 109.47119 * 93.92355 * 1 2 3 30 30 H 1.08991 * 109.47222 * 213.93173 * 1 2 3 31 31 H 1.09009 * 109.46885 * 333.93154 * 1 2 3 32 32 H 1.09001 * 109.47011 * 300.00228 * 7 6 4 33 33 H 1.08996 * 109.46465 * 60.00014 * 7 6 4 34 34 H 0.97003 * 119.99882 * 185.01141 * 14 13 11 35 35 H 1.07998 * 120.03732 * 0.02562 * 20 19 10 36 36 H 1.08007 * 119.95886 * 180.25097 * 21 20 19 37 37 H 1.08001 * 119.92008 * 179.76705 * 22 21 20 38 38 H 1.08002 * 119.95570 * 179.97438 * 23 22 21 39 39 H 1.08009 * 120.04160 * 179.97438 * 24 23 22 40 40 H 1.08997 * 109.45739 * 102.63780 * 25 3 2 41 41 H 1.09003 * 109.45550 * 222.58421 * 25 3 2 42 42 H 1.09002 * 109.70117 * 167.05170 * 26 25 3 43 43 H 1.08994 * 109.70422 * 287.63029 * 26 25 3 44 44 H 1.09000 * 109.70674 * 56.96518 * 27 26 25 45 45 H 1.09005 * 109.70464 * 177.53120 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1438 1.1744 0.0000 4 6 1.3782 2.3650 0.0084 5 8 1.2154 2.9764 1.0477 6 8 0.8245 2.8192 -1.1352 7 6 0.0598 4.0235 -1.0522 8 6 -0.4765 4.3731 -2.4165 9 8 -0.2279 3.6612 -3.3664 10 7 -1.2324 5.4768 -2.5808 11 6 -1.4185 6.3426 -1.5338 12 1 -1.3010 5.9949 -0.5181 13 6 -1.7582 7.6668 -1.7796 14 7 -1.8256 8.1093 -3.0152 15 14 -2.1191 8.8185 -0.3539 16 1 -1.9761 8.0807 0.9269 17 1 -1.1629 9.9543 -0.3809 18 1 -3.5058 9.3359 -0.4744 19 6 -1.8265 5.7390 -3.8188 20 6 -3.1941 5.5591 -3.9869 21 6 -3.7783 5.8232 -5.2098 22 6 -3.0025 6.2570 -6.2694 23 6 -1.6402 6.4321 -6.1071 24 6 -1.0501 6.1746 -4.8857 25 6 3.6444 1.2778 -0.0025 26 6 4.2516 -0.0618 0.4267 27 6 3.5562 -1.1797 -0.3622 28 8 2.1471 -1.1806 -0.0055 29 1 -0.3633 -0.0703 -1.0252 30 1 -0.3633 -0.8526 0.5736 31 1 -0.3633 0.9232 0.4516 32 1 -0.7711 3.8795 -0.3615 33 1 0.6950 4.8331 -0.6927 34 1 -1.9911 9.0499 -3.1851 35 1 -3.7999 5.2168 -3.1609 36 1 -4.8419 5.6875 -5.3400 37 1 -3.4615 6.4592 -7.2258 38 1 -1.0374 6.7706 -6.9369 39 1 0.0139 6.3112 -4.7597 40 1 3.9894 1.5280 -1.0057 41 1 3.9558 2.0570 0.6932 42 1 5.3196 -0.0679 0.2088 43 1 4.0935 -0.2116 1.4946 44 1 3.6645 -0.9973 -1.4313 45 1 4.0012 -2.1414 -0.1066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756439057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:10 Heat of formation + Delta-G solvation = -102.474812 kcal Electronic energy + Delta-G solvation = -30289.682400 eV Core-core repulsion = 26045.577612 eV Total energy + Delta-G solvation = -4244.104788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97157 -39.80453 -39.20233 -37.32437 -36.00817 -34.76980 -34.31369 -33.43594 -31.74746 -29.87683 -29.65670 -28.51255 -27.48027 -25.76212 -25.00530 -23.36172 -22.10414 -21.53263 -21.25532 -19.41871 -19.13890 -17.96585 -17.85802 -16.63134 -16.51972 -16.13288 -15.73448 -15.63167 -15.46679 -14.82748 -14.56191 -14.50305 -14.30334 -14.07371 -13.62793 -13.46626 -13.33046 -13.17596 -12.88681 -12.61004 -12.43294 -12.40824 -12.16448 -12.09185 -11.62555 -11.52444 -11.43024 -11.25694 -11.11190 -10.97295 -10.82570 -10.58171 -10.36023 -10.31243 -10.29482 -10.16798 -9.46682 -8.71941 -8.44653 -8.21963 -7.84924 -7.57269 -6.28829 -4.17637 1.56467 2.33597 2.45935 2.52079 2.89838 3.04258 3.12565 3.17688 3.21044 3.59082 3.99730 4.37809 4.41591 4.59935 4.64972 4.82883 4.86242 5.02404 5.03710 5.13770 5.26639 5.34433 5.37609 5.44141 5.59079 5.67864 5.75093 5.77783 5.80864 5.83293 5.89553 5.93109 5.95508 6.03202 6.13754 6.42181 6.56983 6.71801 6.80672 7.04776 7.11364 7.23307 7.33999 7.46482 7.58110 7.75679 7.96035 8.01753 8.35479 8.88943 9.21262 9.63724 10.54853 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.003029 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.467072 B = 9240.523064 C =10440.560026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.156 3.844 3 C -0.282 4.282 4 C 0.528 3.472 5 O -0.508 6.508 6 O -0.326 6.326 7 C 0.066 3.934 8 C 0.471 3.529 9 O -0.572 6.572 10 N -0.409 5.409 11 C -0.359 4.359 12 H 0.102 0.898 13 C 0.048 3.952 14 N -0.848 5.848 15 Si 0.924 3.076 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.278 1.278 19 C 0.244 3.756 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.148 4.148 23 C -0.120 4.120 24 C -0.072 4.072 25 C -0.059 4.059 26 C -0.155 4.155 27 C 0.056 3.944 28 O -0.308 6.308 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.273 0.727 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 -12.020 3.347 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 C -0.285 4.285 4 C 0.373 3.627 5 O -0.397 6.397 6 O -0.241 6.241 7 C -0.011 4.011 8 C 0.260 3.740 9 O -0.455 6.455 10 N -0.127 5.127 11 C -0.485 4.485 12 H 0.120 0.880 13 C -0.160 4.160 14 N -0.483 5.483 15 Si 0.750 3.250 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.204 1.204 19 C 0.153 3.847 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.166 4.166 23 C -0.139 4.139 24 C -0.092 4.092 25 C -0.096 4.096 26 C -0.192 4.192 27 C -0.018 4.018 28 O -0.220 6.220 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.300 -12.178 3.119 14.062 hybrid contribution -0.079 1.413 0.861 1.656 sum 6.221 -10.766 3.979 13.055 Atomic orbital electron populations 1.21046 0.87701 1.04201 1.04862 1.20901 0.93796 0.83846 0.90663 1.19062 0.96708 0.90869 1.21851 1.19519 0.76787 0.84652 0.81772 1.90893 1.57979 1.58155 1.32711 1.86343 1.61357 1.40933 1.35446 1.22241 0.95832 0.85171 0.97845 1.19600 0.81477 0.83721 0.89216 1.90618 1.60484 1.52875 1.41549 1.41146 1.41803 1.20136 1.09645 1.19701 1.51472 0.90377 0.86962 0.88033 1.25349 0.95607 0.97636 0.97442 1.69881 1.44447 1.15779 1.18164 0.85905 0.78306 0.80044 0.80782 1.19066 1.20416 1.20417 1.17067 0.90721 0.92380 0.84514 1.20902 0.94353 1.02137 0.96799 1.20639 0.98347 1.01590 0.93307 1.20719 0.94103 1.03771 0.98034 1.20673 0.94717 1.01813 0.96682 1.20778 0.99001 0.96891 0.92495 1.20135 0.88696 0.98040 1.02762 1.22196 1.00860 0.94767 1.01394 1.23551 0.77927 1.00550 0.99775 1.86148 1.25233 1.27920 1.82690 0.88459 0.89679 0.89944 0.89478 0.88775 0.91552 0.87487 0.87624 0.87806 0.87626 0.87799 0.90222 0.89896 0.89260 0.90222 0.90617 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.72 36.01 0.35 -1.12 16 2 C 0.16 2.05 6.70 -35.93 -0.24 1.81 16 3 C -0.28 -4.09 5.51 -105.12 -0.58 -4.67 16 4 C 0.53 9.34 4.87 32.00 0.16 9.50 16 5 O -0.51 -9.97 16.86 -19.40 -0.33 -10.29 16 6 O -0.33 -6.46 9.63 -47.87 -0.46 -6.93 16 7 C 0.07 1.38 4.31 36.01 0.16 1.53 16 8 C 0.47 11.45 7.62 -10.98 -0.08 11.36 16 9 O -0.57 -15.22 16.27 -14.35 -0.23 -15.45 16 10 N -0.41 -10.24 2.66 -58.98 -0.16 -10.39 16 11 C -0.36 -8.85 9.03 -14.94 -0.13 -8.99 16 12 H 0.10 2.35 6.63 -52.49 -0.35 2.01 16 13 C 0.05 1.17 5.37 -17.48 -0.09 1.07 16 14 N -0.85 -21.65 10.29 55.49 0.57 -21.08 16 15 Si 0.92 19.22 29.56 -169.99 -5.02 14.19 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 C 0.24 6.04 2.40 -83.69 -0.20 5.84 16 20 C -0.12 -2.80 9.77 -39.37 -0.38 -3.19 16 21 C -0.12 -2.42 10.04 -39.62 -0.40 -2.82 16 22 C -0.15 -2.86 10.04 -39.53 -0.40 -3.26 16 23 C -0.12 -2.48 10.04 -39.62 -0.40 -2.88 16 24 C -0.07 -1.72 8.58 -39.37 -0.34 -2.06 16 25 C -0.06 -0.67 5.89 -27.91 -0.16 -0.84 16 26 C -0.15 -1.25 6.23 -26.37 -0.16 -1.41 16 27 C 0.06 0.45 7.15 37.40 0.27 0.72 16 28 O -0.31 -3.50 10.40 -14.75 -0.15 -3.65 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.11 6.59 -51.92 -0.34 0.76 16 32 H 0.09 1.70 7.83 -51.93 -0.41 1.29 16 33 H 0.09 1.92 8.00 -51.93 -0.42 1.51 16 34 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 35 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 36 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -31.49 383.06 -8.81 -40.30 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.14 Total: 6.94 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.65 Total: 0.59 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.41 Total: -31.47 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.18 Total: -36.33 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.49 -8.81 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756439057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.176 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds