Wall clock time and date at job start Wed Apr 1 2020 03:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33591 * 118.46624 * 2 1 4 4 C 1.41554 * 118.79363 * 0.38614 * 3 2 1 5 5 O 1.21671 * 120.00119 * 100.40480 * 4 3 2 6 6 O 1.34926 * 120.00316 * 280.67369 * 4 3 2 7 7 C 1.42903 * 117.00483 * 179.72701 * 6 4 3 8 8 C 1.50700 * 109.47176 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99999 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99499 * 179.97438 * 8 7 6 11 11 C 1.37134 * 120.00157 * 5.59831 * 10 8 7 12 12 H 1.07998 * 120.00485 * 336.81466 * 11 10 8 13 13 C 1.38898 * 119.99772 * 156.81644 * 11 10 8 14 14 N 1.31419 * 119.99992 * 356.07033 * 13 11 10 15 15 Si 1.86798 * 119.99753 * 176.07260 * 13 11 10 16 16 H 1.48505 * 109.47348 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47211 * 120.00174 * 15 13 11 18 18 H 1.48502 * 109.47046 * 240.00107 * 15 13 11 19 19 C 1.39792 * 119.99761 * 185.59167 * 10 8 7 20 20 C 1.38965 * 120.07451 * 106.28369 * 19 10 8 21 21 C 1.38079 * 119.91839 * 179.79149 * 20 19 10 22 22 C 1.38305 * 120.07963 * 0.46809 * 21 20 19 23 23 C 1.38307 * 120.15575 * 359.78631 * 22 21 20 24 24 C 1.38075 * 120.07828 * 359.97438 * 23 22 21 25 25 C 1.50419 * 122.40742 * 180.11376 * 3 2 1 26 26 C 1.53214 * 109.55937 * 342.60903 * 25 3 2 27 27 C 1.53476 * 108.26013 * 47.36346 * 26 25 3 28 28 O 1.34299 * 118.46619 * 180.26449 * 2 1 3 29 29 H 1.08997 * 109.47119 * 93.92355 * 1 2 3 30 30 H 1.08991 * 109.47222 * 213.93173 * 1 2 3 31 31 H 1.09009 * 109.46885 * 333.93154 * 1 2 3 32 32 H 1.09001 * 109.47011 * 300.00228 * 7 6 4 33 33 H 1.08996 * 109.46465 * 60.00014 * 7 6 4 34 34 H 0.97003 * 119.99882 * 185.01141 * 14 13 11 35 35 H 1.07998 * 120.03732 * 0.02562 * 20 19 10 36 36 H 1.08007 * 119.95886 * 180.25097 * 21 20 19 37 37 H 1.08001 * 119.92008 * 179.76705 * 22 21 20 38 38 H 1.08002 * 119.95570 * 179.97438 * 23 22 21 39 39 H 1.08009 * 120.04160 * 179.97438 * 24 23 22 40 40 H 1.08997 * 109.45739 * 102.63780 * 25 3 2 41 41 H 1.09003 * 109.45550 * 222.58421 * 25 3 2 42 42 H 1.09002 * 109.70117 * 167.05170 * 26 25 3 43 43 H 1.08994 * 109.70422 * 287.63029 * 26 25 3 44 44 H 1.09000 * 109.70674 * 56.96518 * 27 26 25 45 45 H 1.09005 * 109.70464 * 177.53120 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1438 1.1744 0.0000 4 6 1.3782 2.3650 0.0084 5 8 1.2154 2.9764 1.0477 6 8 0.8245 2.8192 -1.1352 7 6 0.0598 4.0235 -1.0522 8 6 -0.4765 4.3731 -2.4165 9 8 -0.2279 3.6612 -3.3664 10 7 -1.2324 5.4768 -2.5808 11 6 -1.4185 6.3426 -1.5338 12 1 -1.3010 5.9949 -0.5181 13 6 -1.7582 7.6668 -1.7796 14 7 -1.8256 8.1093 -3.0152 15 14 -2.1191 8.8185 -0.3539 16 1 -1.9761 8.0807 0.9269 17 1 -1.1629 9.9543 -0.3809 18 1 -3.5058 9.3359 -0.4744 19 6 -1.8265 5.7390 -3.8188 20 6 -3.1941 5.5591 -3.9869 21 6 -3.7783 5.8232 -5.2098 22 6 -3.0025 6.2570 -6.2694 23 6 -1.6402 6.4321 -6.1071 24 6 -1.0501 6.1746 -4.8857 25 6 3.6444 1.2778 -0.0025 26 6 4.2516 -0.0618 0.4267 27 6 3.5562 -1.1797 -0.3622 28 8 2.1471 -1.1806 -0.0055 29 1 -0.3633 -0.0703 -1.0252 30 1 -0.3633 -0.8526 0.5736 31 1 -0.3633 0.9232 0.4516 32 1 -0.7711 3.8795 -0.3615 33 1 0.6950 4.8331 -0.6927 34 1 -1.9911 9.0499 -3.1851 35 1 -3.7999 5.2168 -3.1609 36 1 -4.8419 5.6875 -5.3400 37 1 -3.4615 6.4592 -7.2258 38 1 -1.0374 6.7706 -6.9369 39 1 0.0139 6.3112 -4.7597 40 1 3.9894 1.5280 -1.0057 41 1 3.9558 2.0570 0.6932 42 1 5.3196 -0.0679 0.2088 43 1 4.0935 -0.2116 1.4946 44 1 3.6645 -0.9973 -1.4313 45 1 4.0012 -2.1414 -0.1066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756439057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:09 Heat of formation + Delta-G solvation = -118.105168 kcal Electronic energy + Delta-G solvation = -30290.360183 eV Core-core repulsion = 26045.577612 eV Total energy + Delta-G solvation = -4244.782572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.24340 -41.27854 -40.65520 -39.03403 -37.56737 -36.64020 -35.26148 -34.34174 -33.65103 -31.55901 -31.34746 -29.61899 -28.91018 -26.97383 -26.67440 -24.43793 -23.50719 -23.19926 -22.60917 -21.27149 -20.29665 -19.71890 -19.01398 -18.07050 -17.93478 -17.67988 -17.27052 -16.96278 -16.58434 -16.53862 -16.19475 -16.03929 -15.53850 -15.33377 -15.00498 -14.87616 -14.52319 -14.40195 -14.10658 -14.05989 -13.86902 -13.76753 -13.48353 -13.40118 -13.26410 -13.14901 -12.99454 -12.73112 -12.40861 -12.24618 -12.01937 -11.99885 -11.86549 -11.81807 -11.71404 -11.54961 -11.29359 -10.61531 -10.07553 -9.55037 -9.49057 -9.33761 -8.13745 -6.11055 0.46358 0.76932 0.82153 0.96427 1.34637 1.43984 1.55398 1.65624 1.74603 2.09930 2.27161 2.87831 3.02624 3.25196 3.51899 3.69192 3.87792 3.89854 4.02975 4.10853 4.11592 4.20286 4.24659 4.28547 4.30164 4.36210 4.41033 4.47677 4.52814 4.64074 4.76043 4.79058 4.87450 4.90785 5.08101 5.09176 5.11593 5.15067 5.26765 5.33633 5.37561 5.64484 5.78433 5.81891 6.01403 6.17476 6.22043 6.49230 6.60575 6.98027 7.33284 7.75383 8.67210 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.003029 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.467072 B = 9240.523064 C =10440.560026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.172 3.828 3 C -0.316 4.316 4 C 0.535 3.465 5 O -0.533 6.533 6 O -0.339 6.339 7 C 0.079 3.921 8 C 0.459 3.541 9 O -0.605 6.605 10 N -0.414 5.414 11 C -0.377 4.377 12 H 0.110 0.890 13 C 0.009 3.991 14 N -0.868 5.868 15 Si 0.989 3.011 16 H -0.259 1.259 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.214 3.786 20 C -0.146 4.146 21 C -0.116 4.116 22 C -0.141 4.141 23 C -0.120 4.120 24 C -0.101 4.101 25 C -0.062 4.062 26 C -0.146 4.146 27 C 0.047 3.953 28 O -0.310 6.310 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.272 0.728 35 H 0.102 0.898 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 -12.799 3.159 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.123 3.877 3 C -0.319 4.319 4 C 0.381 3.619 5 O -0.424 6.424 6 O -0.254 6.254 7 C 0.001 3.999 8 C 0.249 3.751 9 O -0.491 6.491 10 N -0.131 5.131 11 C -0.503 4.503 12 H 0.127 0.873 13 C -0.196 4.196 14 N -0.503 5.503 15 Si 0.812 3.188 16 H -0.183 1.183 17 H -0.203 1.203 18 H -0.203 1.203 19 C 0.124 3.876 20 C -0.166 4.166 21 C -0.134 4.134 22 C -0.159 4.159 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.099 4.099 26 C -0.183 4.183 27 C -0.025 4.025 28 O -0.222 6.222 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.124 -12.969 2.933 14.639 hybrid contribution -0.035 1.597 0.829 1.800 sum 6.090 -11.372 3.762 13.437 Atomic orbital electron populations 1.21098 0.87569 1.04406 1.05145 1.20978 0.94188 0.84060 0.88494 1.19257 0.98060 0.89841 1.24703 1.20097 0.75948 0.85113 0.80707 1.90863 1.58922 1.59301 1.33264 1.86371 1.61585 1.40461 1.36987 1.21993 0.96179 0.85831 0.95859 1.20129 0.81352 0.83485 0.90158 1.90565 1.61840 1.53873 1.42844 1.41375 1.41521 1.20142 1.10104 1.20046 1.51931 0.90934 0.87375 0.87273 1.26144 0.95064 0.98698 0.99722 1.70043 1.44617 1.15825 1.19777 0.84926 0.77833 0.77864 0.78154 1.18298 1.20339 1.20273 1.17402 0.91738 0.93797 0.84690 1.21069 0.93764 1.03471 0.98259 1.21090 1.00288 0.99858 0.92202 1.21205 0.93353 1.01763 0.99569 1.21059 0.95998 1.00607 0.96176 1.20792 0.98028 0.99113 0.94123 1.20238 0.86832 1.00089 1.02751 1.22200 1.02365 0.92499 1.01217 1.23958 0.75992 1.02373 1.00218 1.86155 1.27254 1.26696 1.82068 0.88440 0.87077 0.91757 0.88546 0.88852 0.91722 0.87950 0.84019 0.83390 0.84757 0.90163 0.90200 0.90733 0.86158 0.90287 0.90103 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.72 71.24 0.69 -2.35 16 2 C 0.17 4.42 6.70 24.63 0.16 4.59 16 3 C -0.32 -9.26 5.51 -20.19 -0.11 -9.37 16 4 C 0.54 19.65 4.87 68.64 0.33 19.98 16 5 O -0.53 -21.67 16.86 19.28 0.33 -21.34 16 6 O -0.34 -14.08 9.63 -51.95 -0.50 -14.58 16 7 C 0.08 3.43 4.31 71.24 0.31 3.74 16 8 C 0.46 23.45 7.62 87.66 0.67 24.12 16 9 O -0.61 -33.89 16.27 16.00 0.26 -33.63 16 10 N -0.41 -21.61 2.66 -458.89 -1.22 -22.83 16 11 C -0.38 -19.11 9.03 84.02 0.76 -18.35 16 12 H 0.11 5.19 6.63 -2.91 -0.02 5.17 16 13 C 0.01 0.47 5.37 84.91 0.46 0.92 16 14 N -0.87 -44.91 10.29 21.65 0.22 -44.69 16 15 Si 0.99 39.53 29.56 68.60 2.03 41.56 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 17 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 18 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 19 C 0.21 10.92 2.40 38.22 0.09 11.01 16 20 C -0.15 -6.76 9.77 22.41 0.22 -6.54 16 21 C -0.12 -4.45 10.04 22.25 0.22 -4.23 16 22 C -0.14 -5.07 10.04 22.30 0.22 -4.85 16 23 C -0.12 -4.84 10.04 22.25 0.22 -4.62 16 24 C -0.10 -4.96 8.58 22.40 0.19 -4.77 16 25 C -0.06 -1.39 5.89 29.83 0.18 -1.21 16 26 C -0.15 -2.02 6.23 30.83 0.19 -1.83 16 27 C 0.05 0.63 7.15 72.14 0.52 1.15 16 28 O -0.31 -6.46 10.40 -75.69 -0.79 -7.25 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.79 6.59 -2.38 -0.02 1.77 16 32 H 0.10 3.95 7.83 -2.39 -0.02 3.93 16 33 H 0.09 4.03 8.00 -2.39 -0.02 4.01 16 34 H 0.27 13.45 8.32 -92.71 -0.77 12.68 16 35 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.08 4.17 8.06 -2.91 -0.02 4.15 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.15 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -70.89 383.06 6.66 -64.24 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 1.00 Total: 31.13 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 5.33 Total: 7.39 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -1.00 Total: -67.52 kcal Atomic # 8 Polarization: -76.09 SS G_CDS: -0.70 Total: -76.80 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -70.89 6.66 -64.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756439057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.868 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds