Wall clock time and date at job start Wed Apr 1 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 119.99819 * 2 1 4 4 H 1.48502 * 109.47412 * 90.00356 * 3 2 1 5 5 H 1.48497 * 109.47214 * 329.99919 * 3 2 1 6 6 H 1.48503 * 109.46986 * 210.00169 * 3 2 1 7 7 C 1.38649 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00087 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00151 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99784 * 174.94425 * 9 7 2 11 11 C 1.38878 * 120.06677 * 185.26174 * 10 9 7 12 12 C 1.38102 * 119.93059 * 179.69966 * 11 10 9 13 13 C 1.38304 * 120.06622 * 0.59313 * 12 11 10 14 14 C 1.50707 * 119.93172 * 179.70289 * 13 12 11 15 15 C 1.50703 * 109.47041 * 269.98025 * 14 13 12 16 16 O 1.20825 * 119.99914 * 359.97438 * 15 14 13 17 17 O 1.34221 * 119.99778 * 180.02562 * 15 14 13 18 18 C 1.45205 * 116.99648 * 179.97438 * 17 15 14 19 19 H 1.08992 * 110.85889 * 327.65697 * 18 17 15 20 20 C 1.54633 * 110.97225 * 91.45497 * 18 17 15 21 21 C 1.51273 * 104.19882 * 142.91399 * 20 18 17 22 22 O 1.21280 * 124.94498 * 163.70927 * 21 20 18 23 23 N 1.34428 * 110.11695 * 343.74731 * 21 20 18 24 24 C 1.46492 * 124.34893 * 179.57511 * 23 21 20 25 25 C 1.52996 * 117.50238 * 8.76458 * 24 23 21 26 26 C 1.53000 * 117.49829 * 300.10508 * 24 23 21 27 27 C 1.46760 * 111.29617 * 359.59062 * 23 21 20 28 28 C 1.38301 * 120.14057 * 359.67947 * 13 12 11 29 29 C 1.38103 * 120.06674 * 0.02562 * 28 13 12 30 30 H 0.97008 * 120.00231 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.03699 * 359.96812 * 11 10 9 32 32 H 1.08003 * 119.96768 * 180.27462 * 12 11 10 33 33 H 1.09007 * 109.46869 * 29.97744 * 14 13 12 34 34 H 1.08995 * 109.47166 * 149.97705 * 14 13 12 35 35 H 1.09004 * 110.48057 * 261.59609 * 20 18 17 36 36 H 1.09003 * 110.48120 * 24.23113 * 20 18 17 37 37 H 1.09000 * 115.54944 * 154.44433 * 24 23 21 38 38 H 1.08999 * 117.49767 * 0.02562 * 25 24 23 39 39 H 1.09003 * 117.49664 * 145.02446 * 25 24 23 40 40 H 1.08999 * 117.50167 * 214.98486 * 26 24 23 41 41 H 1.09006 * 117.49728 * 359.97438 * 26 24 23 42 42 H 1.09003 * 110.25107 * 258.01458 * 27 23 21 43 43 H 1.09003 * 110.24238 * 136.02099 * 27 23 21 44 44 H 1.07991 * 119.96631 * 180.02562 * 28 13 12 45 45 H 1.07999 * 120.03412 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 1.4001 5 1 1.4469 2.6527 -0.7000 6 1 3.5471 1.4402 -0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3572 -1.2007 0.0011 10 6 3.9734 -2.4055 0.1082 11 6 5.3557 -2.4720 0.2253 12 6 5.9792 -3.6989 0.3403 13 6 5.2295 -4.8611 0.3266 14 6 5.9137 -6.1986 0.4456 15 6 6.2644 -6.7075 -0.9288 16 8 5.9869 -6.0516 -1.9049 17 8 6.8842 -7.8898 -1.0687 18 6 7.1909 -8.3172 -2.4222 19 1 6.4362 -7.9595 -3.1225 20 6 8.6032 -7.8493 -2.8437 21 6 9.1402 -8.9931 -3.6753 22 8 10.0929 -8.9214 -4.4223 23 7 8.4073 -10.1005 -3.4664 24 6 8.6500 -11.3881 -4.1216 25 6 9.9310 -11.5311 -4.9457 26 6 8.5755 -11.4285 -5.6493 27 6 7.3326 -9.8536 -2.4980 28 6 3.8534 -4.7984 0.2045 29 6 3.2235 -3.5743 0.0952 30 1 -0.4851 0.8401 0.0004 31 1 5.9420 -1.5651 0.2307 32 1 7.0537 -3.7511 0.4359 33 1 6.8236 -6.0901 1.0360 34 1 5.2450 -6.9064 0.9354 35 1 8.5411 -6.9396 -3.4410 36 1 9.2295 -7.6886 -1.9661 37 1 8.3010 -12.2657 -3.5774 38 1 10.5935 -10.6673 -5.0001 39 1 10.4248 -12.5029 -4.9439 40 1 8.1780 -12.3328 -6.1101 41 1 8.3455 -10.4971 -6.1668 42 1 7.6043 -10.2560 -1.5221 43 1 6.4016 -10.3016 -2.8454 44 1 3.2708 -5.7076 0.1945 45 1 2.1487 -3.5259 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762107984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:17 Heat of formation + Delta-G solvation = -76.690727 kcal Electronic energy + Delta-G solvation = -28635.908280 eV Core-core repulsion = 24392.921573 eV Total energy + Delta-G solvation = -4242.986707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37508 -40.36903 -39.19053 -37.45532 -37.06877 -36.61550 -35.61388 -32.61041 -31.86901 -30.80909 -30.31666 -28.19072 -27.13883 -25.10576 -23.52120 -23.03714 -22.65684 -22.17411 -21.38352 -20.29021 -19.62836 -18.08765 -17.95637 -17.43868 -17.34651 -16.72304 -16.53541 -16.10924 -15.51332 -14.97961 -14.89431 -14.75982 -14.22402 -14.16591 -14.00511 -13.86947 -13.72144 -13.67623 -13.39770 -13.19319 -12.95343 -12.71689 -12.46352 -12.24226 -11.94333 -11.82075 -11.68708 -11.44869 -11.39914 -11.06330 -11.05320 -10.88408 -10.81599 -10.74260 -10.45387 -10.19515 -9.94979 -9.43995 -9.02274 -8.90998 -8.31603 -7.40502 -6.45947 -4.12538 1.84483 2.04909 2.08758 2.16056 2.24365 2.65702 3.19947 3.23379 3.38279 3.40146 3.79066 3.88821 4.14716 4.20449 4.34750 4.40271 4.46317 4.55383 4.59619 4.76866 4.83814 4.89619 4.99945 5.01843 5.06598 5.09638 5.13819 5.28500 5.32571 5.39574 5.49772 5.55997 5.57603 5.67086 5.82314 6.06667 6.16411 6.22491 6.26360 6.49580 6.55752 6.71901 6.94884 7.12496 7.22804 7.54413 7.67129 7.69327 7.75176 7.98721 8.88977 9.50460 10.61344 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025428 B = 0.001742 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.893532 B =16070.190411 C =16164.696091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.166 3.834 11 C -0.192 4.192 12 C -0.058 4.058 13 C -0.178 4.178 14 C -0.050 4.050 15 C 0.456 3.544 16 O -0.484 6.484 17 O -0.349 6.349 18 C 0.078 3.922 19 H 0.110 0.890 20 C -0.174 4.174 21 C 0.526 3.474 22 O -0.520 6.520 23 N -0.591 5.591 24 C 0.078 3.922 25 C -0.189 4.189 26 C -0.190 4.190 27 C 0.112 3.888 28 C -0.054 4.054 29 C -0.221 4.221 30 H 0.280 0.720 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.680 -23.398 -2.482 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.119 6.119 10 C 0.113 3.887 11 C -0.211 4.211 12 C -0.076 4.076 13 C -0.179 4.179 14 C -0.087 4.087 15 C 0.298 3.702 16 O -0.368 6.368 17 O -0.266 6.266 18 C 0.022 3.978 19 H 0.128 0.872 20 C -0.214 4.214 21 C 0.314 3.686 22 O -0.396 6.396 23 N -0.325 5.325 24 C -0.025 4.025 25 C -0.226 4.226 26 C -0.229 4.229 27 C -0.011 4.011 28 C -0.072 4.072 29 C -0.240 4.240 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.969 -22.839 -3.251 28.057 hybrid contribution -0.064 0.634 -0.152 0.655 sum 15.905 -22.205 -3.403 27.525 Atomic orbital electron populations 1.69643 1.05578 1.28581 1.47645 1.24477 0.95043 0.98886 0.95565 0.86177 0.80371 0.81362 0.78985 1.19833 1.20731 1.18327 1.20780 0.76816 0.96690 1.52285 0.87541 1.83574 1.22713 1.25810 1.79800 1.19157 0.91729 0.85494 0.92322 1.20162 0.91976 0.97839 1.11132 1.20427 0.98120 0.91350 0.97701 1.18684 0.93594 0.92088 1.13553 1.20128 1.02622 0.96025 0.89952 1.24316 0.73948 0.78259 0.93671 1.90728 1.49005 1.56093 1.40994 1.86571 1.71342 1.38415 1.30321 1.23344 0.96998 0.93829 0.83601 0.87231 1.22857 0.96980 0.99169 1.02421 1.20713 0.82177 0.84143 0.81551 1.90629 1.27409 1.83411 1.38192 1.47625 1.31545 1.09954 1.43377 1.21559 1.04348 0.85539 0.91068 1.23783 0.91911 1.05248 1.01668 1.23392 1.01257 1.03755 0.94478 1.22002 0.91293 0.93971 0.93804 1.20587 0.93232 0.96850 0.96550 1.21233 1.01193 0.91754 1.09814 0.90979 0.86381 0.86974 0.87508 0.87465 0.86825 0.86387 0.85023 0.85087 0.88329 0.87987 0.88608 0.89099 0.88855 0.87305 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.04 13.96 55.48 0.77 -24.27 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.48 28.62 -169.99 -4.86 16.62 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.26 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.39 -10.87 9.95 30.88 0.31 -10.57 16 8 H 0.11 3.02 5.44 -52.49 -0.29 2.73 16 9 O -0.21 -5.60 8.59 0.04 0.00 -5.60 16 10 C 0.17 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.19 -3.72 9.99 -39.39 -0.39 -4.12 16 12 C -0.06 -0.94 9.69 -39.61 -0.38 -1.32 16 13 C -0.18 -2.73 4.38 -104.57 -0.46 -3.19 16 14 C -0.05 -0.53 5.94 -29.03 -0.17 -0.70 16 15 C 0.46 5.40 7.95 36.01 0.29 5.68 16 16 O -0.48 -7.61 15.33 -18.75 -0.29 -7.90 16 17 O -0.35 -3.23 9.99 -39.23 -0.39 -3.63 16 18 C 0.08 0.65 3.42 -25.09 -0.09 0.57 16 19 H 0.11 1.02 7.32 -51.93 -0.38 0.64 16 20 C -0.17 -1.55 6.62 -26.74 -0.18 -1.72 16 21 C 0.53 5.44 7.88 -10.86 -0.09 5.36 16 22 O -0.52 -6.99 14.69 5.56 0.08 -6.91 16 23 N -0.59 -4.72 3.27 -164.85 -0.54 -5.26 16 24 C 0.08 0.53 6.88 -67.94 -0.47 0.07 16 25 C -0.19 -1.46 9.78 -26.70 -0.26 -1.72 16 26 C -0.19 -1.35 10.34 -26.70 -0.28 -1.62 16 27 C 0.11 0.68 7.12 -3.12 -0.02 0.66 16 28 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 29 C -0.22 -4.66 9.17 -39.39 -0.36 -5.02 16 30 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 32 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.11 0.87 8.08 -51.92 -0.42 0.45 16 34 H 0.11 0.89 8.08 -51.93 -0.42 0.47 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.12 0.94 8.11 -51.93 -0.42 0.52 16 37 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.13 1.40 5.29 -51.93 -0.27 1.12 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.13 2.96 5.64 -52.49 -0.30 2.67 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.07 384.10 -8.59 -41.66 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.86 Total: 3.28 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.29 Total: -13.77 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 0.24 Total: -29.52 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.60 Total: -24.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.86 Total: 16.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.07 -8.59 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762107984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.033 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds