Wall clock time and date at job start Wed Apr 1 2020 03:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 119.99819 * 2 1 4 4 H 1.48502 * 109.47412 * 90.00356 * 3 2 1 5 5 H 1.48497 * 109.47214 * 329.99919 * 3 2 1 6 6 H 1.48503 * 109.46986 * 210.00169 * 3 2 1 7 7 C 1.38649 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00087 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00151 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99784 * 174.94425 * 9 7 2 11 11 C 1.38878 * 120.06677 * 185.26174 * 10 9 7 12 12 C 1.38102 * 119.93059 * 179.69966 * 11 10 9 13 13 C 1.38304 * 120.06622 * 0.59313 * 12 11 10 14 14 C 1.50707 * 119.93172 * 179.70289 * 13 12 11 15 15 C 1.50703 * 109.47041 * 269.98025 * 14 13 12 16 16 O 1.20825 * 119.99914 * 359.97438 * 15 14 13 17 17 O 1.34221 * 119.99778 * 180.02562 * 15 14 13 18 18 C 1.45205 * 116.99648 * 179.97438 * 17 15 14 19 19 H 1.08992 * 110.85889 * 327.65697 * 18 17 15 20 20 C 1.54633 * 110.97225 * 91.45497 * 18 17 15 21 21 C 1.51273 * 104.19882 * 142.91399 * 20 18 17 22 22 O 1.21280 * 124.94498 * 163.70927 * 21 20 18 23 23 N 1.34428 * 110.11695 * 343.74731 * 21 20 18 24 24 C 1.46492 * 124.34893 * 179.57511 * 23 21 20 25 25 C 1.52996 * 117.50238 * 8.76458 * 24 23 21 26 26 C 1.53000 * 117.49829 * 300.10508 * 24 23 21 27 27 C 1.46760 * 111.29617 * 359.59062 * 23 21 20 28 28 C 1.38301 * 120.14057 * 359.67947 * 13 12 11 29 29 C 1.38103 * 120.06674 * 0.02562 * 28 13 12 30 30 H 0.97008 * 120.00231 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.03699 * 359.96812 * 11 10 9 32 32 H 1.08003 * 119.96768 * 180.27462 * 12 11 10 33 33 H 1.09007 * 109.46869 * 29.97744 * 14 13 12 34 34 H 1.08995 * 109.47166 * 149.97705 * 14 13 12 35 35 H 1.09004 * 110.48057 * 261.59609 * 20 18 17 36 36 H 1.09003 * 110.48120 * 24.23113 * 20 18 17 37 37 H 1.09000 * 115.54944 * 154.44433 * 24 23 21 38 38 H 1.08999 * 117.49767 * 0.02562 * 25 24 23 39 39 H 1.09003 * 117.49664 * 145.02446 * 25 24 23 40 40 H 1.08999 * 117.50167 * 214.98486 * 26 24 23 41 41 H 1.09006 * 117.49728 * 359.97438 * 26 24 23 42 42 H 1.09003 * 110.25107 * 258.01458 * 27 23 21 43 43 H 1.09003 * 110.24238 * 136.02099 * 27 23 21 44 44 H 1.07991 * 119.96631 * 180.02562 * 28 13 12 45 45 H 1.07999 * 120.03412 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 1.4001 5 1 1.4469 2.6527 -0.7000 6 1 3.5471 1.4402 -0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3572 -1.2007 0.0011 10 6 3.9734 -2.4055 0.1082 11 6 5.3557 -2.4720 0.2253 12 6 5.9792 -3.6989 0.3403 13 6 5.2295 -4.8611 0.3266 14 6 5.9137 -6.1986 0.4456 15 6 6.2644 -6.7075 -0.9288 16 8 5.9869 -6.0516 -1.9049 17 8 6.8842 -7.8898 -1.0687 18 6 7.1909 -8.3172 -2.4222 19 1 6.4362 -7.9595 -3.1225 20 6 8.6032 -7.8493 -2.8437 21 6 9.1402 -8.9931 -3.6753 22 8 10.0929 -8.9214 -4.4223 23 7 8.4073 -10.1005 -3.4664 24 6 8.6500 -11.3881 -4.1216 25 6 9.9310 -11.5311 -4.9457 26 6 8.5755 -11.4285 -5.6493 27 6 7.3326 -9.8536 -2.4980 28 6 3.8534 -4.7984 0.2045 29 6 3.2235 -3.5743 0.0952 30 1 -0.4851 0.8401 0.0004 31 1 5.9420 -1.5651 0.2307 32 1 7.0537 -3.7511 0.4359 33 1 6.8236 -6.0901 1.0360 34 1 5.2450 -6.9064 0.9354 35 1 8.5411 -6.9396 -3.4410 36 1 9.2295 -7.6886 -1.9661 37 1 8.3010 -12.2657 -3.5774 38 1 10.5935 -10.6673 -5.0001 39 1 10.4248 -12.5029 -4.9439 40 1 8.1780 -12.3328 -6.1101 41 1 8.3455 -10.4971 -6.1668 42 1 7.6043 -10.2560 -1.5221 43 1 6.4016 -10.3016 -2.8454 44 1 3.2708 -5.7076 0.1945 45 1 2.1487 -3.5259 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762107984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:16 Heat of formation + Delta-G solvation = -96.253133 kcal Electronic energy + Delta-G solvation = -28636.756570 eV Core-core repulsion = 24392.921573 eV Total energy + Delta-G solvation = -4243.834996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.13398 -41.30773 -40.73807 -38.68471 -37.86964 -37.70702 -36.38957 -34.53230 -33.17741 -31.81903 -31.54586 -29.02298 -28.37904 -26.89306 -24.16383 -23.85609 -23.69417 -23.29503 -22.39199 -21.49842 -20.33385 -19.82974 -19.12867 -18.92622 -18.04788 -17.55149 -17.35972 -16.98851 -16.63647 -16.37801 -16.03390 -15.77782 -15.61337 -15.57786 -15.20364 -14.87771 -14.82813 -14.44983 -14.36765 -14.24169 -14.12842 -14.04466 -13.99338 -13.44072 -13.05676 -12.85785 -12.56094 -12.54859 -12.45910 -12.38558 -12.32954 -12.03833 -11.94842 -11.83997 -11.49817 -11.37150 -11.28264 -10.90364 -10.72939 -9.79378 -9.64593 -9.02616 -8.50837 -6.23328 0.52826 0.58613 1.23345 1.30396 1.30678 1.33515 1.44019 1.51209 1.88680 2.27293 2.75970 2.84311 3.05460 3.13185 3.16084 3.24952 3.49726 3.76816 3.82109 3.86550 3.96259 4.02215 4.03430 4.15515 4.18567 4.43010 4.44832 4.45502 4.56390 4.61598 4.66156 4.71146 4.72995 4.76474 4.81860 4.97953 4.99362 5.23313 5.24464 5.34454 5.42171 5.55867 5.57595 5.71171 5.79280 5.89937 5.90886 6.24131 6.79853 6.83513 6.93389 7.57963 8.60601 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025428 B = 0.001742 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.893532 B =16070.190411 C =16164.696091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.399 4.399 8 H 0.082 0.918 9 O -0.246 6.246 10 C 0.121 3.879 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.150 4.150 14 C -0.049 4.049 15 C 0.465 3.535 16 O -0.531 6.531 17 O -0.331 6.331 18 C 0.078 3.922 19 H 0.098 0.902 20 C -0.171 4.171 21 C 0.517 3.483 22 O -0.561 6.561 23 N -0.589 5.589 24 C 0.080 3.920 25 C -0.201 4.201 26 C -0.190 4.190 27 C 0.118 3.882 28 C -0.058 4.058 29 C -0.241 4.241 30 H 0.285 0.715 31 H 0.127 0.873 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.169 0.831 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.070 0.930 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.139 0.861 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.992 -26.608 -1.031 32.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.476 4.476 8 H 0.099 0.901 9 O -0.154 6.154 10 C 0.072 3.928 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.151 4.151 14 C -0.086 4.086 15 C 0.309 3.691 16 O -0.419 6.419 17 O -0.248 6.248 18 C 0.022 3.978 19 H 0.116 0.884 20 C -0.211 4.211 21 C 0.305 3.695 22 O -0.441 6.441 23 N -0.321 5.321 24 C -0.022 4.022 25 C -0.238 4.238 26 C -0.229 4.229 27 C -0.004 4.004 28 C -0.076 4.076 29 C -0.260 4.260 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.186 0.814 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.157 0.843 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.295 -26.124 -1.768 31.942 hybrid contribution -0.538 1.232 -0.607 1.475 sum 17.757 -24.892 -2.375 30.669 Atomic orbital electron populations 1.69726 1.06841 1.29584 1.50101 1.25276 0.95902 1.02131 0.95551 0.85222 0.78696 0.77460 0.79351 1.18831 1.19232 1.18996 1.20712 0.78090 0.96142 1.52632 0.90084 1.83515 1.21291 1.27594 1.82969 1.19743 0.93321 0.85124 0.94612 1.20518 0.90566 0.99970 1.10495 1.20990 1.00390 0.90176 0.95664 1.19261 0.92838 0.94628 1.08382 1.20282 1.04761 0.93580 0.89974 1.24396 0.73036 0.78323 0.93365 1.90753 1.51064 1.57506 1.42547 1.86551 1.70511 1.37054 1.30663 1.23391 0.96056 0.95541 0.82798 0.88403 1.22810 0.97635 0.98219 1.02448 1.20977 0.81959 0.85219 0.81314 1.90624 1.29292 1.84191 1.39958 1.47775 1.31270 1.09851 1.43174 1.21954 1.03262 0.85899 0.91088 1.23709 0.92030 1.04981 1.03123 1.23398 1.00936 1.03634 0.94913 1.22163 0.91652 0.92065 0.94489 1.20966 0.94763 0.96262 0.95620 1.21274 1.00222 0.93338 1.11165 0.90567 0.85496 0.82584 0.83471 0.83957 0.88167 0.85212 0.81405 0.88364 0.86211 0.85564 0.91105 0.86817 0.86532 0.84282 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.96 21.61 0.30 -54.97 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 45.86 28.62 68.60 1.96 47.82 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.40 -23.76 9.95 67.92 0.68 -23.09 16 8 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 9 O -0.25 -13.55 8.59 -22.77 -0.20 -13.75 16 10 C 0.12 5.70 6.65 22.58 0.15 5.85 16 11 C -0.20 -7.45 9.99 22.39 0.22 -7.23 16 12 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 13 C -0.15 -4.01 4.38 -19.83 -0.09 -4.10 16 14 C -0.05 -0.75 5.94 29.10 0.17 -0.57 16 15 C 0.46 8.95 7.95 71.24 0.57 9.52 16 16 O -0.53 -15.33 15.33 21.97 0.34 -14.99 16 17 O -0.33 -4.61 9.99 -51.33 -0.51 -5.12 16 18 C 0.08 1.07 3.42 31.65 0.11 1.18 16 19 H 0.10 1.64 7.32 -2.39 -0.02 1.62 16 20 C -0.17 -2.77 6.62 30.59 0.20 -2.57 16 21 C 0.52 10.28 7.88 87.89 0.69 10.97 16 22 O -0.56 -15.52 14.69 -3.03 -0.04 -15.57 16 23 N -0.59 -7.95 3.27 -794.06 -2.60 -10.55 16 24 C 0.08 0.87 6.88 44.99 0.31 1.18 16 25 C -0.20 -2.89 9.78 30.62 0.30 -2.59 16 26 C -0.19 -2.41 10.34 30.62 0.32 -2.09 16 27 C 0.12 0.95 7.12 86.83 0.62 1.57 16 28 C -0.06 -1.90 9.69 22.25 0.22 -1.68 16 29 C -0.24 -10.52 9.17 22.39 0.21 -10.31 16 30 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 31 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.15 1.24 8.08 -2.38 -0.02 1.22 16 34 H 0.14 1.35 8.08 -2.39 -0.02 1.33 16 35 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.13 1.75 8.11 -2.39 -0.02 1.73 16 37 H 0.17 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.10 2.17 5.29 -2.39 -0.01 2.15 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.11 0.50 8.10 -2.39 -0.02 0.48 16 43 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.14 3.63 8.06 -2.92 -0.02 3.61 16 45 H 0.11 5.18 5.64 -2.91 -0.02 5.16 16 Total: -1.00 -80.18 384.10 5.63 -74.56 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.02 Total: 16.85 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 5.35 Total: -24.28 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -2.30 Total: -65.52 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.42 Total: -49.43 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.96 Total: 47.82 kcal Total: -80.18 5.63 -74.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762107984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.695 kcal (2) G-P(sol) polarization free energy of solvation -80.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds