Wall clock time and date at job start Wed Apr 1 2020 03:05:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31555 * 1
3 3 Si 1.86797 * 120.00603 * 2 1
4 4 H 1.48497 * 109.47241 * 89.99756 * 3 2 1
5 5 H 1.48501 * 109.47018 * 209.99577 * 3 2 1
6 6 H 1.48502 * 109.47007 * 329.99924 * 3 2 1
7 7 C 1.38655 * 119.99407 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00547 * 0.02562 * 7 2 1
9 9 O 1.34832 * 120.00328 * 180.02562 * 7 2 1
10 10 C 1.35741 * 117.00506 * 174.94171 * 9 7 2
11 11 C 1.38876 * 120.07311 * 185.26117 * 10 9 7
12 12 C 1.38095 * 119.93553 * 179.72514 * 11 10 9
13 13 C 1.38307 * 120.06786 * 0.53251 * 12 11 10
14 14 C 1.50701 * 119.93426 * 179.74906 * 13 12 11
15 15 C 1.50704 * 109.46692 * 270.02388 * 14 13 12
16 16 O 1.20828 * 119.99995 * 359.97438 * 15 14 13
17 17 O 1.34224 * 119.99737 * 180.02562 * 15 14 13
18 18 C 1.45203 * 117.00021 * 179.97438 * 17 15 14
19 19 H 1.09003 * 110.85203 * 29.29715 * 18 17 15
20 20 C 1.54631 * 110.97097 * 265.51011 * 18 17 15
21 21 C 1.51283 * 104.19152 * 266.67624 * 20 18 17
22 22 O 1.21280 * 124.93731 * 163.71220 * 21 20 18
23 23 N 1.34422 * 110.11820 * 343.74753 * 21 20 18
24 24 C 1.46496 * 124.34811 * 179.58773 * 23 21 20
25 25 C 1.53006 * 117.50175 * 8.64712 * 24 23 21
26 26 C 1.53001 * 59.99982 * 252.50957 * 25 24 23
27 27 C 1.46857 * 111.30759 * 359.58742 * 23 21 20
28 28 C 1.38298 * 120.13665 * 359.76588 * 13 12 11
29 29 C 1.38104 * 120.06875 * 359.95708 * 28 13 12
30 30 H 0.97004 * 119.99666 * 0.02562 * 1 2 3
31 31 H 1.08009 * 120.03349 * 0.02562 * 11 10 9
32 32 H 1.07997 * 119.97169 * 180.28266 * 12 11 10
33 33 H 1.09005 * 109.47129 * 30.01525 * 14 13 12
34 34 H 1.08992 * 109.47421 * 150.02294 * 14 13 12
35 35 H 1.08995 * 110.48477 * 25.35506 * 20 18 17
36 36 H 1.09000 * 110.48565 * 147.99782 * 20 18 17
37 37 H 1.08997 * 115.55105 * 154.35273 * 24 23 21
38 38 H 1.08998 * 117.49265 * 359.97438 * 25 24 23
39 39 H 1.08993 * 117.49963 * 145.02047 * 25 24 23
40 40 H 1.08997 * 117.50210 * 252.51164 * 26 25 24
41 41 H 1.09004 * 117.49977 * 107.48665 * 26 25 24
42 42 H 1.08998 * 110.26153 * 258.03875 * 27 23 21
43 43 H 1.09003 * 110.27978 * 136.01107 * 27 23 21
44 44 H 1.07995 * 119.97045 * 179.97438 * 28 13 12
45 45 H 1.08004 * 120.03386 * 179.97438 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2497 1.6176 0.0000
4 1 2.4972 2.0463 1.4000
5 1 3.5473 1.4399 -0.7000
6 1 1.4472 2.6526 -0.7001
7 6 2.0087 -1.2009 0.0005
8 1 1.4687 -2.1362 0.0005
9 8 3.3570 -1.2011 0.0011
10 6 3.9731 -2.4059 0.1082
11 6 5.3554 -2.4727 0.2253
12 6 5.9787 -3.6996 0.3398
13 6 5.2290 -4.8617 0.3270
14 6 5.9129 -6.1992 0.4465
15 6 6.2641 -6.7083 -0.9278
16 8 5.9871 -6.0525 -1.9041
17 8 6.8838 -7.8907 -1.0673
18 6 7.1910 -8.3184 -2.4205
19 1 7.3507 -7.4592 -3.0721
20 6 6.0777 -9.2358 -2.9772
21 6 6.5541 -10.6349 -2.6545
22 8 5.8559 -11.6265 -2.6669
23 7 7.8635 -10.6190 -2.3513
24 6 8.6408 -11.8045 -1.9816
25 6 7.9649 -13.1686 -2.1350
26 6 8.1966 -12.5820 -0.7410
27 6 8.4150 -9.2607 -2.4381
28 6 3.8529 -4.7989 0.2043
29 6 3.2231 -3.5746 0.0951
30 1 -0.4850 0.8401 -0.0004
31 1 5.9418 -1.5657 0.2316
32 1 7.0532 -3.7520 0.4355
33 1 6.8226 -6.0907 1.0371
34 1 5.2440 -6.9069 0.9361
35 1 5.1301 -9.0310 -2.4790
36 1 5.9792 -9.1053 -4.0549
37 1 9.7104 -11.7470 -2.1833
38 1 6.9418 -13.1838 -2.5105
39 1 8.5898 -14.0087 -2.4377
40 1 8.9740 -13.0361 -0.1266
41 1 7.3260 -12.2114 -0.1998
42 1 8.9721 -9.1381 -3.3669
43 1 9.0587 -9.0588 -1.5820
44 1 3.2701 -5.7080 0.1941
45 1 2.1484 -3.5262 -0.0011
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000762107985.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:05:20
Heat of formation + Delta-G solvation = -76.931625 kcal
Electronic energy + Delta-G solvation = -28847.208073 eV
Core-core repulsion = 24604.210921 eV
Total energy + Delta-G solvation = -4242.997153 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.145 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.36873 -40.28293 -39.17590 -37.42669 -37.00428 -36.59931 -35.49994 -32.60049
-31.84904 -30.82565 -30.30828 -28.16780 -27.15753 -25.10260 -23.48183 -23.00995
-22.66846 -22.16005 -21.32580 -20.26552 -19.58051 -18.10481 -17.94208 -17.38791
-17.34004 -16.79415 -16.39459 -16.03159 -15.51980 -14.97003 -14.85466 -14.74993
-14.18490 -14.15890 -13.91295 -13.83176 -13.71019 -13.69415 -13.40732 -13.10776
-12.74102 -12.64909 -12.43387 -12.24176 -11.87458 -11.86244 -11.79175 -11.50633
-11.38919 -11.05235 -11.04088 -10.83173 -10.81448 -10.73704 -10.44867 -10.19192
-9.86008 -9.43165 -8.97233 -8.90307 -8.30882 -7.39660 -6.45234 -4.11815
1.91064 2.09352 2.11987 2.18975 2.37755 2.59071 3.20034 3.23466
3.38159 3.43858 3.80339 3.88300 4.16761 4.20731 4.37291 4.40719
4.55505 4.57025 4.66629 4.79011 4.83664 4.86825 4.98087 5.02769
5.06748 5.11072 5.16511 5.31206 5.34045 5.40023 5.51235 5.59300
5.61043 5.67653 5.87971 6.07398 6.22676 6.24212 6.27215 6.50317
6.62869 6.72659 6.95552 7.13504 7.23867 7.55127 7.71353 7.75561
7.76196 7.99482 8.89610 9.51092 10.62124
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.029084 B = 0.001810 C = 0.001775
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 962.498980 B =15465.083304 C =15773.823048
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.877 5.877
2 C 0.064 3.936
3 Si 0.906 3.094
4 H -0.273 1.273
5 H -0.259 1.259
6 H -0.282 1.282
7 C -0.390 4.390
8 H 0.107 0.893
9 O -0.215 6.215
10 C 0.165 3.835
11 C -0.192 4.192
12 C -0.058 4.058
13 C -0.177 4.177
14 C -0.051 4.051
15 C 0.456 3.544
16 O -0.486 6.486
17 O -0.351 6.351
18 C 0.074 3.926
19 H 0.118 0.882
20 C -0.171 4.171
21 C 0.524 3.476
22 O -0.523 6.523
23 N -0.592 5.592
24 C 0.079 3.921
25 C -0.190 4.190
26 C -0.189 4.189
27 C 0.111 3.889
28 C -0.054 4.054
29 C -0.220 4.220
30 H 0.280 0.720
31 H 0.118 0.882
32 H 0.112 0.888
33 H 0.106 0.894
34 H 0.106 0.894
35 H 0.112 0.888
36 H 0.122 0.878
37 H 0.131 0.869
38 H 0.131 0.869
39 H 0.097 0.903
40 H 0.101 0.899
41 H 0.096 0.904
42 H 0.095 0.905
43 H 0.096 0.904
44 H 0.109 0.891
45 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.169 -20.833 -2.607 29.114
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.514 5.514
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.198 1.198
5 H -0.183 1.183
6 H -0.207 1.207
7 C -0.466 4.466
8 H 0.125 0.875
9 O -0.119 6.119
10 C 0.113 3.887
11 C -0.211 4.211
12 C -0.076 4.076
13 C -0.178 4.178
14 C -0.089 4.089
15 C 0.298 3.702
16 O -0.370 6.370
17 O -0.269 6.269
18 C 0.018 3.982
19 H 0.136 0.864
20 C -0.211 4.211
21 C 0.313 3.687
22 O -0.400 6.400
23 N -0.325 5.325
24 C -0.025 4.025
25 C -0.228 4.228
26 C -0.228 4.228
27 C -0.012 4.012
28 C -0.072 4.072
29 C -0.239 4.239
30 H 0.090 0.910
31 H 0.136 0.864
32 H 0.130 0.870
33 H 0.124 0.876
34 H 0.124 0.876
35 H 0.130 0.870
36 H 0.140 0.860
37 H 0.148 0.852
38 H 0.149 0.851
39 H 0.116 0.884
40 H 0.119 0.881
41 H 0.114 0.886
42 H 0.113 0.887
43 H 0.115 0.885
44 H 0.127 0.873
45 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 19.629 -20.828 -2.961 28.773
hybrid contribution 0.142 0.731 -0.120 0.754
sum 19.771 -20.097 -3.081 28.360
Atomic orbital electron populations
1.69647 1.05579 1.28569 1.47645 1.24482 0.95047 0.98885 0.95590
0.86171 0.80348 0.81362 0.78970 1.19848 1.18338 1.20737 1.20784
0.76812 0.96696 1.52273 0.87544 1.83567 1.22719 1.25805 1.79823
1.19152 0.91729 0.85485 0.92352 1.20153 0.91968 0.97805 1.11200
1.20414 0.98085 0.91332 0.97788 1.18682 0.93589 0.92077 1.13451
1.20126 1.02582 0.96026 0.90127 1.24293 0.74223 0.78059 0.93611
1.90715 1.48789 1.56558 1.40978 1.86642 1.71299 1.38071 1.30878
1.23506 0.94055 0.97416 0.83242 0.86381 1.22814 1.00961 0.92683
1.04619 1.20786 0.81466 0.90897 0.75590 1.90621 1.59057 1.37428
1.52889 1.47623 1.09696 1.07311 1.67887 1.21531 0.95021 0.83133
1.02801 1.23769 1.05025 0.94252 0.99709 1.23365 1.03927 1.03968
0.91506 1.22229 0.95254 0.79677 1.04021 1.20596 0.93260 0.96870
0.96507 1.21237 1.01202 0.91738 1.09760 0.90984 0.86389 0.86994
0.87565 0.87595 0.86961 0.85994 0.85192 0.85104 0.88444 0.88100
0.88555 0.88673 0.88545 0.87332 0.84811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.14 13.96 55.48 0.77 -24.37 16
2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16
3 Si 0.91 21.49 28.62 -169.99 -4.86 16.62 16
4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
5 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16
6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
7 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16
8 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16
9 O -0.21 -5.62 8.59 0.07 0.00 -5.62 16
10 C 0.17 3.78 6.65 -39.11 -0.26 3.52 16
11 C -0.19 -3.73 9.99 -39.40 -0.39 -4.12 16
12 C -0.06 -0.94 9.69 -39.61 -0.38 -1.33 16
13 C -0.18 -2.77 4.38 -104.57 -0.46 -3.23 16
14 C -0.05 -0.58 5.94 -29.03 -0.17 -0.75 16
15 C 0.46 5.58 7.95 36.01 0.29 5.87 16
16 O -0.49 -7.61 15.28 -18.75 -0.29 -7.89 16
17 O -0.35 -3.54 10.00 -39.24 -0.39 -3.93 16
18 C 0.07 0.59 3.47 -25.10 -0.09 0.50 16
19 H 0.12 0.92 7.22 -51.93 -0.38 0.54 16
20 C -0.17 -1.51 6.62 -26.74 -0.18 -1.68 16
21 C 0.52 5.57 7.88 -10.86 -0.09 5.49 16
22 O -0.52 -7.27 14.69 5.56 0.08 -7.19 16
23 N -0.59 -4.83 3.27 -164.77 -0.54 -5.37 16
24 C 0.08 0.56 6.88 -67.93 -0.47 0.09 16
25 C -0.19 -1.53 9.77 -26.73 -0.26 -1.79 16
26 C -0.19 -1.42 10.34 -26.73 -0.28 -1.70 16
27 C 0.11 0.63 7.12 -3.07 -0.02 0.61 16
28 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16
29 C -0.22 -4.70 9.17 -39.39 -0.36 -5.06 16
30 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16
31 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16
32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16
33 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16
34 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16
35 H 0.11 1.13 8.11 -51.93 -0.42 0.71 16
36 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16
37 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.13 1.45 5.29 -51.93 -0.27 1.17 16
39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16
41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
42 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16
43 H 0.10 0.47 8.11 -51.93 -0.42 0.05 16
44 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16
45 H 0.13 3.01 5.64 -52.48 -0.30 2.71 16
LS Contribution 384.03 15.07 5.79 5.79
Total: -1.00 -33.67 384.03 -8.58 -42.25
By element:
Atomic # 1 Polarization: 9.41 SS G_CDS: -5.85 Total: 3.55 kcal
Atomic # 6 Polarization: -10.55 SS G_CDS: -3.29 Total: -13.84 kcal
Atomic # 7 Polarization: -29.97 SS G_CDS: 0.24 Total: -29.74 kcal
Atomic # 8 Polarization: -24.04 SS G_CDS: -0.60 Total: -24.63 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -4.86 Total: 16.62 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -33.67 -8.58 -42.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000762107985.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.679 kcal
(2) G-P(sol) polarization free energy of solvation -33.668 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.348 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.932 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds