Wall clock time and date at job start Wed Apr 1 2020 03:05:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31555 * 1
3 3 Si 1.86797 * 120.00603 * 2 1
4 4 H 1.48497 * 109.47241 * 89.99756 * 3 2 1
5 5 H 1.48501 * 109.47018 * 209.99577 * 3 2 1
6 6 H 1.48502 * 109.47007 * 329.99924 * 3 2 1
7 7 C 1.38655 * 119.99407 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00547 * 0.02562 * 7 2 1
9 9 O 1.34832 * 120.00328 * 180.02562 * 7 2 1
10 10 C 1.35741 * 117.00506 * 174.94171 * 9 7 2
11 11 C 1.38876 * 120.07311 * 185.26117 * 10 9 7
12 12 C 1.38095 * 119.93553 * 179.72514 * 11 10 9
13 13 C 1.38307 * 120.06786 * 0.53251 * 12 11 10
14 14 C 1.50701 * 119.93426 * 179.74906 * 13 12 11
15 15 C 1.50704 * 109.46692 * 270.02388 * 14 13 12
16 16 O 1.20828 * 119.99995 * 359.97438 * 15 14 13
17 17 O 1.34224 * 119.99737 * 180.02562 * 15 14 13
18 18 C 1.45203 * 117.00021 * 179.97438 * 17 15 14
19 19 H 1.09003 * 110.85203 * 29.29715 * 18 17 15
20 20 C 1.54631 * 110.97097 * 265.51011 * 18 17 15
21 21 C 1.51283 * 104.19152 * 266.67624 * 20 18 17
22 22 O 1.21280 * 124.93731 * 163.71220 * 21 20 18
23 23 N 1.34422 * 110.11820 * 343.74753 * 21 20 18
24 24 C 1.46496 * 124.34811 * 179.58773 * 23 21 20
25 25 C 1.53006 * 117.50175 * 8.64712 * 24 23 21
26 26 C 1.53001 * 59.99982 * 252.50957 * 25 24 23
27 27 C 1.46857 * 111.30759 * 359.58742 * 23 21 20
28 28 C 1.38298 * 120.13665 * 359.76588 * 13 12 11
29 29 C 1.38104 * 120.06875 * 359.95708 * 28 13 12
30 30 H 0.97004 * 119.99666 * 0.02562 * 1 2 3
31 31 H 1.08009 * 120.03349 * 0.02562 * 11 10 9
32 32 H 1.07997 * 119.97169 * 180.28266 * 12 11 10
33 33 H 1.09005 * 109.47129 * 30.01525 * 14 13 12
34 34 H 1.08992 * 109.47421 * 150.02294 * 14 13 12
35 35 H 1.08995 * 110.48477 * 25.35506 * 20 18 17
36 36 H 1.09000 * 110.48565 * 147.99782 * 20 18 17
37 37 H 1.08997 * 115.55105 * 154.35273 * 24 23 21
38 38 H 1.08998 * 117.49265 * 359.97438 * 25 24 23
39 39 H 1.08993 * 117.49963 * 145.02047 * 25 24 23
40 40 H 1.08997 * 117.50210 * 252.51164 * 26 25 24
41 41 H 1.09004 * 117.49977 * 107.48665 * 26 25 24
42 42 H 1.08998 * 110.26153 * 258.03875 * 27 23 21
43 43 H 1.09003 * 110.27978 * 136.01107 * 27 23 21
44 44 H 1.07995 * 119.97045 * 179.97438 * 28 13 12
45 45 H 1.08004 * 120.03386 * 179.97438 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2497 1.6176 0.0000
4 1 2.4972 2.0463 1.4000
5 1 3.5473 1.4399 -0.7000
6 1 1.4472 2.6526 -0.7001
7 6 2.0087 -1.2009 0.0005
8 1 1.4687 -2.1362 0.0005
9 8 3.3570 -1.2011 0.0011
10 6 3.9731 -2.4059 0.1082
11 6 5.3554 -2.4727 0.2253
12 6 5.9787 -3.6996 0.3398
13 6 5.2290 -4.8617 0.3270
14 6 5.9129 -6.1992 0.4465
15 6 6.2641 -6.7083 -0.9278
16 8 5.9871 -6.0525 -1.9041
17 8 6.8838 -7.8907 -1.0673
18 6 7.1910 -8.3184 -2.4205
19 1 7.3507 -7.4592 -3.0721
20 6 6.0777 -9.2358 -2.9772
21 6 6.5541 -10.6349 -2.6545
22 8 5.8559 -11.6265 -2.6669
23 7 7.8635 -10.6190 -2.3513
24 6 8.6408 -11.8045 -1.9816
25 6 7.9649 -13.1686 -2.1350
26 6 8.1966 -12.5820 -0.7410
27 6 8.4150 -9.2607 -2.4381
28 6 3.8529 -4.7989 0.2043
29 6 3.2231 -3.5746 0.0951
30 1 -0.4850 0.8401 -0.0004
31 1 5.9418 -1.5657 0.2316
32 1 7.0532 -3.7520 0.4355
33 1 6.8226 -6.0907 1.0371
34 1 5.2440 -6.9069 0.9361
35 1 5.1301 -9.0310 -2.4790
36 1 5.9792 -9.1053 -4.0549
37 1 9.7104 -11.7470 -2.1833
38 1 6.9418 -13.1838 -2.5105
39 1 8.5898 -14.0087 -2.4377
40 1 8.9740 -13.0361 -0.1266
41 1 7.3260 -12.2114 -0.1998
42 1 8.9721 -9.1381 -3.3669
43 1 9.0587 -9.0588 -1.5820
44 1 3.2701 -5.7080 0.1941
45 1 2.1484 -3.5262 -0.0011
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000762107985.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:05:19
Heat of formation + Delta-G solvation = -97.086666 kcal
Electronic energy + Delta-G solvation = -28848.082062 eV
Core-core repulsion = 24604.210921 eV
Total energy + Delta-G solvation = -4243.871141 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.145 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.13714 -41.25189 -40.72150 -38.67901 -37.83737 -37.67063 -36.28674 -34.53684
-33.18433 -31.83253 -31.55190 -28.98570 -28.40984 -26.91222 -24.11046 -23.89132
-23.69093 -23.31343 -22.33304 -21.48208 -20.29007 -19.82977 -19.12711 -18.96008
-18.00314 -17.65483 -17.29651 -16.85403 -16.58901 -16.42187 -16.04322 -15.78076
-15.61926 -15.55060 -15.20935 -14.81469 -14.69385 -14.45988 -14.36982 -14.33202
-14.18610 -14.06560 -13.70914 -13.25832 -13.04922 -12.88662 -12.57445 -12.54088
-12.49445 -12.42608 -12.35350 -12.06391 -11.94681 -11.85013 -11.48606 -11.37499
-11.29404 -10.90561 -10.64594 -9.80566 -9.60388 -9.03503 -8.50888 -6.23806
0.52588 0.57456 1.23698 1.31079 1.34295 1.35794 1.51832 1.64668
1.82462 2.27626 2.76381 2.85960 3.04984 3.14593 3.16630 3.25764
3.52539 3.74551 3.87329 3.93103 3.99491 4.00934 4.05092 4.14638
4.22006 4.41624 4.42792 4.50138 4.55072 4.64650 4.68145 4.68389
4.71847 4.78773 4.79644 4.96489 5.01768 5.22978 5.26509 5.34378
5.42600 5.54643 5.62616 5.70099 5.78410 5.90066 5.96900 6.22940
6.79722 6.83141 7.00996 7.57003 8.60676
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.029084 B = 0.001810 C = 0.001775
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 962.498980 B =15465.083304 C =15773.823048
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.008 3.992
3 Si 0.973 3.027
4 H -0.264 1.264
5 H -0.263 1.263
6 H -0.268 1.268
7 C -0.400 4.400
8 H 0.079 0.921
9 O -0.244 6.244
10 C 0.122 3.878
11 C -0.193 4.193
12 C -0.051 4.051
13 C -0.149 4.149
14 C -0.053 4.053
15 C 0.465 3.535
16 O -0.527 6.527
17 O -0.345 6.345
18 C 0.071 3.929
19 H 0.126 0.874
20 C -0.170 4.170
21 C 0.513 3.487
22 O -0.568 6.568
23 N -0.590 5.590
24 C 0.082 3.918
25 C -0.204 4.204
26 C -0.189 4.189
27 C 0.115 3.885
28 C -0.062 4.062
29 C -0.241 4.241
30 H 0.285 0.715
31 H 0.131 0.869
32 H 0.161 0.839
33 H 0.149 0.851
34 H 0.130 0.870
35 H 0.095 0.905
36 H 0.138 0.862
37 H 0.168 0.832
38 H 0.096 0.904
39 H 0.118 0.882
40 H 0.126 0.874
41 H 0.069 0.931
42 H 0.130 0.870
43 H 0.115 0.885
44 H 0.132 0.868
45 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.229 -22.085 -2.162 33.599
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.190 4.190
3 Si 0.795 3.205
4 H -0.189 1.189
5 H -0.187 1.187
6 H -0.192 1.192
7 C -0.477 4.477
8 H 0.097 0.903
9 O -0.152 6.152
10 C 0.073 3.927
11 C -0.212 4.212
12 C -0.069 4.069
13 C -0.150 4.150
14 C -0.089 4.089
15 C 0.309 3.691
16 O -0.415 6.415
17 O -0.263 6.263
18 C 0.016 3.984
19 H 0.144 0.856
20 C -0.210 4.210
21 C 0.302 3.698
22 O -0.448 6.448
23 N -0.321 5.321
24 C -0.021 4.021
25 C -0.242 4.242
26 C -0.228 4.228
27 C -0.006 4.006
28 C -0.080 4.080
29 C -0.260 4.260
30 H 0.094 0.906
31 H 0.149 0.851
32 H 0.178 0.822
33 H 0.166 0.834
34 H 0.148 0.852
35 H 0.113 0.887
36 H 0.156 0.844
37 H 0.186 0.814
38 H 0.115 0.885
39 H 0.136 0.864
40 H 0.144 0.856
41 H 0.088 0.912
42 H 0.147 0.853
43 H 0.133 0.867
44 H 0.150 0.850
45 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 24.754 -22.124 -2.496 33.293
hybrid contribution -1.209 0.696 -0.249 1.417
sum 23.545 -21.428 -2.744 31.954
Atomic orbital electron populations
1.69736 1.06941 1.29627 1.50051 1.25318 0.95923 1.02269 0.95480
0.85184 0.78733 0.77216 0.79363 1.18853 1.18731 1.19235 1.20701
0.78125 0.96094 1.52730 0.90322 1.83508 1.21220 1.27499 1.82935
1.19738 0.93395 0.85000 0.94583 1.20534 0.90420 1.00030 1.10219
1.20986 1.00484 0.89933 0.95500 1.19218 0.92702 0.94603 1.08462
1.20256 1.04581 0.93598 0.90496 1.24256 0.73425 0.78169 0.93222
1.90729 1.50589 1.57845 1.42288 1.86624 1.70552 1.36856 1.32245
1.23752 0.94605 0.97891 0.82190 0.85625 1.22824 1.00564 0.92074
1.05588 1.21116 0.82326 0.90909 0.75465 1.90614 1.60372 1.38857
1.54935 1.47796 1.09035 1.08790 1.66518 1.21930 0.96351 0.82058
1.01714 1.23686 1.03846 0.96146 1.00473 1.23361 1.03668 1.04270
0.91453 1.22494 0.94159 0.77310 1.06640 1.20922 0.94904 0.96136
0.96022 1.21246 1.00158 0.93347 1.11234 0.90557 0.85089 0.82177
0.83356 0.85202 0.88705 0.84425 0.81438 0.88530 0.86355 0.85620
0.91207 0.85266 0.86656 0.85042 0.87670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.69 13.96 21.61 0.30 -55.39 16
2 C 0.01 0.49 5.49 84.83 0.47 0.96 16
3 Si 0.97 45.71 28.62 68.60 1.96 47.67 16
4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16
5 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16
6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
7 C -0.40 -23.93 9.95 67.92 0.68 -23.26 16
8 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16
9 O -0.24 -13.42 8.59 -22.66 -0.19 -13.61 16
10 C 0.12 5.75 6.65 22.58 0.15 5.90 16
11 C -0.19 -7.22 9.99 22.39 0.22 -7.00 16
12 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16
13 C -0.15 -4.14 4.38 -19.83 -0.09 -4.22 16
14 C -0.05 -0.91 5.94 29.10 0.17 -0.73 16
15 C 0.47 9.56 7.95 71.24 0.57 10.13 16
16 O -0.53 -15.03 15.28 21.96 0.34 -14.69 16
17 O -0.35 -5.63 10.00 -51.36 -0.51 -6.14 16
18 C 0.07 0.91 3.47 31.65 0.11 1.02 16
19 H 0.13 1.52 7.22 -2.39 -0.02 1.50 16
20 C -0.17 -2.78 6.62 30.59 0.20 -2.58 16
21 C 0.51 10.48 7.88 87.90 0.69 11.17 16
22 O -0.57 -16.30 14.69 -3.03 -0.04 -16.34 16
23 N -0.59 -7.98 3.27 -793.80 -2.60 -10.58 16
24 C 0.08 0.91 6.88 45.00 0.31 1.22 16
25 C -0.20 -3.06 9.77 30.60 0.30 -2.76 16
26 C -0.19 -2.48 10.34 30.60 0.32 -2.17 16
27 C 0.12 0.80 7.12 86.81 0.62 1.42 16
28 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16
29 C -0.24 -10.75 9.17 22.39 0.21 -10.55 16
30 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16
31 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16
32 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16
33 H 0.15 1.48 8.08 -2.38 -0.02 1.46 16
34 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16
35 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16
36 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16
37 H 0.17 0.61 8.14 -2.39 -0.02 0.59 16
38 H 0.10 2.22 5.29 -2.39 -0.01 2.21 16
39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16
40 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16
42 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16
43 H 0.12 0.47 8.11 -2.39 -0.02 0.45 16
44 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16
45 H 0.11 5.22 5.64 -2.91 -0.02 5.21 16
Total: -1.00 -81.54 384.03 5.63 -75.91
By element:
Atomic # 1 Polarization: 16.76 SS G_CDS: 1.02 Total: 17.79 kcal
Atomic # 6 Polarization: -29.97 SS G_CDS: 5.35 Total: -24.62 kcal
Atomic # 7 Polarization: -63.67 SS G_CDS: -2.30 Total: -65.97 kcal
Atomic # 8 Polarization: -50.37 SS G_CDS: -0.42 Total: -50.79 kcal
Atomic # 14 Polarization: 45.71 SS G_CDS: 1.96 Total: 47.67 kcal
Total: -81.54 5.63 -75.91 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000762107985.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.172 kcal
(2) G-P(sol) polarization free energy of solvation -81.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.915 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.087 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds