Wall clock time and date at job start Wed Apr 1 2020 03:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86795 * 120.00352 * 2 1 4 4 H 1.48503 * 109.46891 * 265.73360 * 3 2 1 5 5 H 1.48497 * 109.47292 * 25.73641 * 3 2 1 6 6 H 1.48499 * 109.47207 * 145.73736 * 3 2 1 7 7 C 1.38896 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99753 * 337.86449 * 7 2 1 9 9 N 1.37136 * 120.00056 * 157.86889 * 7 2 1 10 10 C 1.34773 * 120.00278 * 152.87199 * 9 7 2 11 11 O 1.21278 * 120.00010 * 174.94909 * 10 9 7 12 12 C 1.50707 * 119.99941 * 354.95224 * 10 9 7 13 13 O 1.45194 * 109.46935 * 179.97438 * 12 10 9 14 14 C 1.34230 * 116.99665 * 179.97438 * 13 12 10 15 15 O 1.20823 * 120.00385 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00270 * 179.97438 * 14 13 12 17 17 H 1.09009 * 115.59537 * 325.86980 * 16 14 13 18 18 C 1.53257 * 117.53155 * 111.72731 * 16 14 13 19 19 C 1.51759 * 117.53416 * 179.97438 * 16 14 13 20 20 C 1.53679 * 122.37768 * 4.33227 * 19 16 14 21 21 C 1.54369 * 103.79800 * 163.07874 * 20 19 16 22 22 O 1.43837 * 107.43939 * 2.65098 * 21 20 19 23 23 C 1.44812 * 107.11775 * 334.06232 * 22 21 20 24 24 C 1.39792 * 119.99821 * 332.86574 * 9 7 2 25 25 C 1.38956 * 120.07352 * 117.86174 * 24 9 7 26 26 C 1.38083 * 119.92389 * 179.69913 * 25 24 9 27 27 C 1.38312 * 120.07184 * 0.57708 * 26 25 24 28 28 C 1.38308 * 120.15767 * 359.72397 * 27 26 25 29 29 C 1.38078 * 120.07844 * 359.97438 * 28 27 26 30 30 H 0.97003 * 119.99684 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46940 * 59.99916 * 12 10 9 32 32 H 1.08997 * 109.46735 * 299.99867 * 12 10 9 33 33 H 1.08996 * 117.52682 * 0.02562 * 18 16 14 34 34 H 1.09000 * 117.53285 * 214.79774 * 18 16 14 35 35 H 1.08994 * 110.56279 * 44.49373 * 20 19 16 36 36 H 1.09004 * 110.68265 * 281.71517 * 20 19 16 37 37 H 1.08999 * 109.87483 * 122.16055 * 21 20 19 38 38 H 1.09004 * 109.87199 * 243.15111 * 21 20 19 39 39 H 1.09002 * 110.52743 * 279.97697 * 23 22 21 40 40 H 1.09002 * 110.80368 * 157.04869 * 23 22 21 41 41 H 1.08002 * 120.04232 * 0.02562 * 25 24 9 42 42 H 1.07994 * 119.97093 * 180.30286 * 26 25 24 43 43 H 1.07996 * 119.92283 * 179.73771 * 27 26 25 44 44 H 1.07999 * 119.96430 * 179.97438 * 28 27 26 45 45 H 1.07996 * 120.04487 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5860 1.9942 -1.3962 5 1 1.4037 2.6770 0.6079 6 1 3.4978 1.4677 0.7882 7 6 2.0086 -1.2029 0.0005 8 1 1.5282 -2.1036 0.3534 9 7 3.3042 -1.2470 -0.4469 10 6 4.1476 -2.1877 0.0223 11 8 5.2648 -2.2850 -0.4393 12 6 3.7022 -3.1187 1.1206 13 8 4.7817 -4.0331 1.4472 14 6 4.5457 -4.9340 2.4139 15 8 3.4725 -4.9579 2.9685 16 6 5.6189 -5.9163 2.8069 17 1 6.2665 -6.2548 1.9980 18 6 6.2436 -5.7641 4.1980 19 6 5.2921 -6.9096 3.9068 20 6 3.8970 -7.0016 4.5446 21 6 3.9048 -8.3745 5.2505 22 8 5.2124 -8.9454 5.0685 23 6 5.7622 -8.3738 3.8569 24 6 3.7500 -0.3162 -1.3897 25 6 4.7749 0.5651 -1.0675 26 6 5.2172 1.4791 -2.0033 27 6 4.6331 1.5260 -3.2561 28 6 3.6085 0.6546 -3.5782 29 6 3.1655 -0.2661 -2.6494 30 1 -0.4850 0.8401 -0.0004 31 1 2.8342 -3.6866 0.7857 32 1 3.4377 -2.5379 2.0042 33 1 5.8779 -4.9537 4.8286 34 1 7.3019 -6.0026 4.3039 35 1 3.1227 -6.9696 3.7781 36 1 3.7509 -6.1998 5.2684 37 1 3.7012 -8.2457 6.3135 38 1 3.1514 -9.0244 4.8052 39 1 5.3578 -8.8776 2.9789 40 1 6.8508 -8.4284 3.8624 41 1 5.2288 0.5317 -0.0880 42 1 6.0170 2.1611 -1.7553 43 1 4.9780 2.2447 -3.9847 44 1 3.1544 0.6942 -4.5572 45 1 2.3657 -0.9466 -2.9016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764632708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:39 Heat of formation + Delta-G solvation = -82.621706 kcal Electronic energy + Delta-G solvation = -29909.990513 eV Core-core repulsion = 25666.746620 eV Total energy + Delta-G solvation = -4243.243893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92775 -40.01196 -39.38503 -37.78794 -36.59969 -35.66060 -34.99875 -32.25062 -30.63535 -30.41953 -30.00979 -28.29571 -27.50060 -25.20486 -24.59828 -22.79380 -22.20326 -22.00410 -20.87779 -19.66342 -19.30157 -18.23980 -17.58276 -16.65107 -16.38464 -16.37513 -16.03224 -15.84721 -15.69000 -15.39858 -15.36851 -14.81576 -14.36683 -13.92724 -13.86690 -13.65201 -13.16196 -13.03693 -12.92177 -12.85623 -12.62149 -12.52208 -12.41017 -12.16300 -11.89269 -11.70113 -11.30189 -11.15338 -11.00432 -10.78473 -10.74432 -10.65059 -10.43046 -10.37397 -10.08021 -10.04769 -9.88635 -9.47117 -9.00210 -8.56116 -8.33865 -7.78590 -6.68762 -4.28308 1.80114 1.93772 2.13219 2.53868 3.07074 3.22091 3.25121 3.32332 3.39813 3.71896 3.95415 4.06627 4.26010 4.32118 4.37293 4.44743 4.63677 4.83052 4.94470 4.98989 5.15311 5.22742 5.33450 5.36739 5.39202 5.41911 5.46387 5.48092 5.60678 5.61455 5.65437 5.69635 5.79256 5.87920 5.95231 5.98549 6.10143 6.24555 6.53451 6.55513 6.64331 6.83042 6.99211 7.03815 7.15238 7.50131 7.73582 7.88487 8.05508 8.64431 9.03653 9.31663 10.38613 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.002563 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.868062 B =10922.255905 C =11734.826597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.081 3.919 3 Si 0.861 3.139 4 H -0.251 1.251 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.367 4.367 8 H 0.115 0.885 9 N -0.415 5.415 10 C 0.480 3.520 11 O -0.561 6.561 12 C 0.073 3.927 13 O -0.331 6.331 14 C 0.489 3.511 15 O -0.504 6.504 16 C -0.144 4.144 17 H 0.140 0.860 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.113 4.113 21 C 0.046 3.954 22 O -0.376 6.376 23 C 0.086 3.914 24 C 0.158 3.842 25 C -0.126 4.126 26 C -0.117 4.117 27 C -0.138 4.138 28 C -0.114 4.114 29 C -0.109 4.109 30 H 0.280 0.720 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.606 -8.106 4.222 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.129 4.129 3 Si 0.687 3.313 4 H -0.175 1.175 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.132 0.868 9 N -0.132 5.132 10 C 0.270 3.730 11 O -0.442 6.442 12 C -0.004 4.004 13 O -0.246 6.246 14 C 0.331 3.669 15 O -0.392 6.392 16 C -0.163 4.163 17 H 0.158 0.842 18 C -0.161 4.161 19 C -0.134 4.134 20 C -0.150 4.150 21 C -0.031 4.031 22 O -0.295 6.295 23 C 0.009 3.991 24 C 0.066 3.934 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.157 4.157 28 C -0.132 4.132 29 C -0.129 4.129 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.691 -8.233 4.308 12.723 hybrid contribution -0.288 1.252 -0.099 1.289 sum 8.403 -6.981 4.209 11.707 Atomic orbital electron populations 1.69761 1.06356 1.28861 1.42734 1.25188 0.95077 0.98715 0.93955 0.87154 0.80121 0.82898 0.81154 1.17506 1.21813 1.18415 1.19216 0.85499 0.97761 1.46682 0.86756 1.41360 1.11049 1.26666 1.34096 1.19802 0.84655 0.84251 0.84336 1.90633 1.20159 1.73114 1.60321 1.22629 0.87731 0.90752 0.99262 1.86463 1.43835 1.42725 1.51564 1.22442 0.87421 0.79888 0.77123 1.90662 1.25828 1.70146 1.52577 1.21541 1.00578 0.99055 0.95118 0.84176 1.22995 0.99297 0.99518 0.94266 1.22185 0.98170 0.92868 1.00213 1.22397 0.94871 0.97222 1.00516 1.23285 0.85198 0.93440 1.01158 1.88943 1.31167 1.66415 1.42996 1.22909 0.99306 0.88420 0.88447 1.17630 0.94875 0.91551 0.89327 1.21189 0.98220 0.95323 0.99869 1.20850 1.00040 0.98922 0.93717 1.20967 0.97857 1.00112 0.96731 1.20918 0.97342 0.95991 0.98998 1.21181 1.00663 0.99412 0.91630 0.91002 0.88527 0.88020 0.87499 0.86701 0.88688 0.89894 0.89792 0.92201 0.91151 0.88511 0.86268 0.86394 0.86626 0.86270 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.51 13.96 55.49 0.77 -21.73 16 2 C 0.08 2.08 5.20 -17.48 -0.09 1.99 16 3 Si 0.86 20.08 23.47 -169.99 -3.99 16.09 16 4 H -0.25 -5.70 5.27 56.52 0.30 -5.40 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.04 6.11 56.52 0.35 -5.69 16 7 C -0.37 -9.20 9.12 -14.94 -0.14 -9.33 16 8 H 0.11 2.92 6.90 -52.48 -0.36 2.56 16 9 N -0.41 -9.86 2.49 -58.97 -0.15 -10.00 16 10 C 0.48 11.06 7.53 -10.98 -0.08 10.97 16 11 O -0.56 -14.01 16.07 -14.10 -0.23 -14.23 16 12 C 0.07 1.44 4.62 36.01 0.17 1.61 16 13 O -0.33 -6.12 9.75 -45.90 -0.45 -6.57 16 14 C 0.49 7.67 7.74 36.01 0.28 7.94 16 15 O -0.50 -8.68 13.63 -18.75 -0.26 -8.93 16 16 C -0.14 -1.64 6.21 -92.27 -0.57 -2.21 16 17 H 0.14 1.35 8.14 -51.92 -0.42 0.93 16 18 C -0.12 -1.17 10.04 -27.24 -0.27 -1.44 16 19 C -0.13 -1.37 2.39 -154.98 -0.37 -1.74 16 20 C -0.11 -1.23 5.16 -25.66 -0.13 -1.37 16 21 C 0.05 0.44 7.71 37.88 0.29 0.73 16 22 O -0.38 -4.13 11.54 -35.23 -0.41 -4.54 16 23 C 0.09 0.77 7.56 37.61 0.28 1.05 16 24 C 0.16 3.60 2.29 -83.69 -0.19 3.41 16 25 C -0.13 -2.68 5.86 -39.37 -0.23 -2.91 16 26 C -0.12 -2.10 9.56 -39.61 -0.38 -2.48 16 27 C -0.14 -2.32 9.74 -39.53 -0.38 -2.70 16 28 C -0.11 -2.02 9.63 -39.61 -0.38 -2.41 16 29 C -0.11 -2.29 8.49 -39.37 -0.33 -2.62 16 30 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.10 1.87 7.48 -51.93 -0.39 1.48 16 32 H 0.10 1.98 8.13 -51.93 -0.42 1.56 16 33 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.18 6.89 -51.93 -0.36 0.82 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.12 2.56 7.71 -52.49 -0.40 2.15 16 42 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -30.90 371.02 -7.95 -38.85 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.30 Total: 7.00 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.54 Total: -1.52 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.63 Total: -31.74 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.34 Total: -34.27 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -3.99 Total: 16.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.90 -7.95 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764632708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.772 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds