Wall clock time and date at job start Wed Apr 1 2020 03:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86795 * 120.00352 * 2 1 4 4 H 1.48503 * 109.46891 * 265.73360 * 3 2 1 5 5 H 1.48497 * 109.47292 * 25.73641 * 3 2 1 6 6 H 1.48499 * 109.47207 * 145.73736 * 3 2 1 7 7 C 1.38896 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99753 * 337.86449 * 7 2 1 9 9 N 1.37136 * 120.00056 * 157.86889 * 7 2 1 10 10 C 1.34773 * 120.00278 * 152.87199 * 9 7 2 11 11 O 1.21278 * 120.00010 * 174.94909 * 10 9 7 12 12 C 1.50707 * 119.99941 * 354.95224 * 10 9 7 13 13 O 1.45194 * 109.46935 * 179.97438 * 12 10 9 14 14 C 1.34230 * 116.99665 * 179.97438 * 13 12 10 15 15 O 1.20823 * 120.00385 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00270 * 179.97438 * 14 13 12 17 17 H 1.09009 * 115.59537 * 325.86980 * 16 14 13 18 18 C 1.53257 * 117.53155 * 111.72731 * 16 14 13 19 19 C 1.51759 * 117.53416 * 179.97438 * 16 14 13 20 20 C 1.53679 * 122.37768 * 4.33227 * 19 16 14 21 21 C 1.54369 * 103.79800 * 163.07874 * 20 19 16 22 22 O 1.43837 * 107.43939 * 2.65098 * 21 20 19 23 23 C 1.44812 * 107.11775 * 334.06232 * 22 21 20 24 24 C 1.39792 * 119.99821 * 332.86574 * 9 7 2 25 25 C 1.38956 * 120.07352 * 117.86174 * 24 9 7 26 26 C 1.38083 * 119.92389 * 179.69913 * 25 24 9 27 27 C 1.38312 * 120.07184 * 0.57708 * 26 25 24 28 28 C 1.38308 * 120.15767 * 359.72397 * 27 26 25 29 29 C 1.38078 * 120.07844 * 359.97438 * 28 27 26 30 30 H 0.97003 * 119.99684 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46940 * 59.99916 * 12 10 9 32 32 H 1.08997 * 109.46735 * 299.99867 * 12 10 9 33 33 H 1.08996 * 117.52682 * 0.02562 * 18 16 14 34 34 H 1.09000 * 117.53285 * 214.79774 * 18 16 14 35 35 H 1.08994 * 110.56279 * 44.49373 * 20 19 16 36 36 H 1.09004 * 110.68265 * 281.71517 * 20 19 16 37 37 H 1.08999 * 109.87483 * 122.16055 * 21 20 19 38 38 H 1.09004 * 109.87199 * 243.15111 * 21 20 19 39 39 H 1.09002 * 110.52743 * 279.97697 * 23 22 21 40 40 H 1.09002 * 110.80368 * 157.04869 * 23 22 21 41 41 H 1.08002 * 120.04232 * 0.02562 * 25 24 9 42 42 H 1.07994 * 119.97093 * 180.30286 * 26 25 24 43 43 H 1.07996 * 119.92283 * 179.73771 * 27 26 25 44 44 H 1.07999 * 119.96430 * 179.97438 * 28 27 26 45 45 H 1.07996 * 120.04487 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5860 1.9942 -1.3962 5 1 1.4037 2.6770 0.6079 6 1 3.4978 1.4677 0.7882 7 6 2.0086 -1.2029 0.0005 8 1 1.5282 -2.1036 0.3534 9 7 3.3042 -1.2470 -0.4469 10 6 4.1476 -2.1877 0.0223 11 8 5.2648 -2.2850 -0.4393 12 6 3.7022 -3.1187 1.1206 13 8 4.7817 -4.0331 1.4472 14 6 4.5457 -4.9340 2.4139 15 8 3.4725 -4.9579 2.9685 16 6 5.6189 -5.9163 2.8069 17 1 6.2665 -6.2548 1.9980 18 6 6.2436 -5.7641 4.1980 19 6 5.2921 -6.9096 3.9068 20 6 3.8970 -7.0016 4.5446 21 6 3.9048 -8.3745 5.2505 22 8 5.2124 -8.9454 5.0685 23 6 5.7622 -8.3738 3.8569 24 6 3.7500 -0.3162 -1.3897 25 6 4.7749 0.5651 -1.0675 26 6 5.2172 1.4791 -2.0033 27 6 4.6331 1.5260 -3.2561 28 6 3.6085 0.6546 -3.5782 29 6 3.1655 -0.2661 -2.6494 30 1 -0.4850 0.8401 -0.0004 31 1 2.8342 -3.6866 0.7857 32 1 3.4377 -2.5379 2.0042 33 1 5.8779 -4.9537 4.8286 34 1 7.3019 -6.0026 4.3039 35 1 3.1227 -6.9696 3.7781 36 1 3.7509 -6.1998 5.2684 37 1 3.7012 -8.2457 6.3135 38 1 3.1514 -9.0244 4.8052 39 1 5.3578 -8.8776 2.9789 40 1 6.8508 -8.4284 3.8624 41 1 5.2288 0.5317 -0.0880 42 1 6.0170 2.1611 -1.7553 43 1 4.9780 2.2447 -3.9847 44 1 3.1544 0.6942 -4.5572 45 1 2.3657 -0.9466 -2.9016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764632708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:38 Heat of formation + Delta-G solvation = -100.071638 kcal Electronic energy + Delta-G solvation = -29910.747199 eV Core-core repulsion = 25666.746620 eV Total energy + Delta-G solvation = -4244.000579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13359 -41.58285 -40.48284 -39.34487 -37.80945 -36.86816 -36.71023 -34.18931 -31.90738 -31.67928 -31.37893 -29.61903 -28.51629 -27.08292 -25.73281 -23.69423 -23.57804 -23.49909 -21.97283 -21.17457 -20.56634 -19.93146 -18.90853 -18.14223 -17.87485 -17.60187 -17.35424 -17.03319 -16.95783 -16.75713 -16.44870 -16.13965 -15.88214 -15.40788 -15.32472 -14.93543 -14.76451 -14.47781 -14.34955 -14.17639 -13.92302 -13.84580 -13.66127 -13.45431 -13.14722 -12.88595 -12.66043 -12.54387 -12.49757 -12.21349 -12.09325 -11.92950 -11.84367 -11.65150 -11.49704 -11.27907 -11.02116 -10.80536 -10.64125 -10.39978 -9.84605 -9.43863 -8.66424 -6.27213 0.28296 0.43997 0.92217 1.17807 1.23899 1.32483 1.38915 1.58201 2.16154 2.41752 2.49351 2.73339 2.94931 2.96668 3.31594 3.48538 3.58395 3.71297 3.78083 3.90860 3.98371 4.05340 4.08248 4.16123 4.17250 4.24843 4.34378 4.43763 4.52488 4.63141 4.65545 4.66005 4.71472 4.78799 4.84065 4.86781 5.02819 5.08012 5.08839 5.23901 5.30483 5.46427 5.54199 5.55825 5.81441 5.81799 5.94072 6.21625 6.56922 6.72596 7.13329 7.47202 8.44030 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.002563 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.868062 B =10922.255905 C =11734.826597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.050 3.950 3 Si 0.909 3.091 4 H -0.238 1.238 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.421 5.421 10 C 0.476 3.524 11 O -0.584 6.584 12 C 0.082 3.918 13 O -0.343 6.343 14 C 0.483 3.517 15 O -0.525 6.525 16 C -0.154 4.154 17 H 0.162 0.838 18 C -0.109 4.109 19 C -0.134 4.134 20 C -0.116 4.116 21 C 0.049 3.951 22 O -0.391 6.391 23 C 0.087 3.913 24 C 0.120 3.880 25 C -0.147 4.147 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.110 4.110 29 C -0.132 4.132 30 H 0.283 0.717 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.155 0.845 43 H 0.165 0.835 44 H 0.156 0.844 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.952 -7.293 3.264 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.161 1.161 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.115 0.885 9 N -0.138 5.138 10 C 0.266 3.734 11 O -0.467 6.467 12 C 0.005 3.995 13 O -0.258 6.258 14 C 0.328 3.672 15 O -0.414 6.414 16 C -0.173 4.173 17 H 0.180 0.820 18 C -0.145 4.145 19 C -0.134 4.134 20 C -0.153 4.153 21 C -0.028 4.028 22 O -0.310 6.310 23 C 0.011 3.989 24 C 0.029 3.971 25 C -0.167 4.167 26 C -0.134 4.134 27 C -0.142 4.142 28 C -0.128 4.128 29 C -0.151 4.151 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.172 0.828 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.042 -7.422 3.342 13.718 hybrid contribution -0.977 0.970 0.141 1.384 sum 10.065 -6.452 3.482 12.452 Atomic orbital electron populations 1.69813 1.07388 1.29638 1.44571 1.25641 0.95436 1.00892 0.93750 0.86395 0.78730 0.79913 0.81554 1.16141 1.22188 1.18964 1.19113 0.86062 0.97311 1.46633 0.88519 1.41397 1.10517 1.27170 1.34704 1.20193 0.84383 0.84221 0.84590 1.90588 1.21014 1.73796 1.61349 1.22356 0.88154 0.90747 0.98203 1.86487 1.43273 1.43173 1.52879 1.23390 0.88338 0.79569 0.75933 1.90654 1.27086 1.70629 1.53053 1.21683 1.00162 0.98670 0.96781 0.82032 1.23199 1.00894 0.98568 0.91868 1.22287 0.97990 0.93936 0.99197 1.22347 0.95064 0.97979 0.99949 1.23296 0.85183 0.92519 1.01759 1.88926 1.31495 1.66734 1.43871 1.23073 1.00773 0.87004 0.88049 1.17980 0.96678 0.92388 0.90017 1.21290 0.98390 0.96594 1.00460 1.21345 1.00419 0.98119 0.93480 1.21553 0.96139 0.99649 0.96891 1.21395 0.97166 0.94594 0.99675 1.21305 1.00971 1.00785 0.92069 0.90666 0.88656 0.88153 0.88233 0.83372 0.90782 0.90775 0.88659 0.91548 0.90549 0.85947 0.87623 0.82775 0.81777 0.82668 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.13 13.96 21.65 0.30 -47.83 16 2 C 0.05 2.63 5.20 84.91 0.44 3.08 16 3 Si 0.91 41.76 23.47 68.60 1.61 43.37 16 4 H -0.24 -10.26 5.27 99.48 0.52 -9.74 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.26 -12.23 6.11 99.48 0.61 -11.62 16 7 C -0.37 -19.13 9.12 84.02 0.77 -18.36 16 8 H 0.10 5.26 6.90 -2.91 -0.02 5.24 16 9 N -0.42 -20.68 2.49 -458.89 -1.14 -21.82 16 10 C 0.48 22.81 7.53 87.66 0.66 23.46 16 11 O -0.58 -30.00 16.07 15.78 0.25 -29.74 16 12 C 0.08 3.44 4.62 71.24 0.33 3.77 16 13 O -0.34 -13.09 9.75 -45.06 -0.44 -13.53 16 14 C 0.48 15.53 7.74 71.24 0.55 16.09 16 15 O -0.52 -18.91 13.63 21.97 0.30 -18.61 16 16 C -0.15 -3.37 6.21 -11.86 -0.07 -3.44 16 17 H 0.16 2.81 8.14 -2.38 -0.02 2.79 16 18 C -0.11 -1.85 10.04 30.26 0.30 -1.54 16 19 C -0.13 -2.56 2.39 -52.49 -0.13 -2.69 16 20 C -0.12 -2.55 5.16 31.29 0.16 -2.39 16 21 C 0.05 0.90 7.71 72.45 0.56 1.46 16 22 O -0.39 -7.89 11.54 -148.98 -1.72 -9.61 16 23 C 0.09 1.37 7.56 72.27 0.55 1.91 16 24 C 0.12 5.49 2.29 38.22 0.09 5.58 16 25 C -0.15 -6.14 5.86 22.41 0.13 -6.01 16 26 C -0.12 -3.76 9.56 22.25 0.21 -3.54 16 27 C -0.12 -3.57 9.74 22.30 0.22 -3.35 16 28 C -0.11 -3.55 9.63 22.25 0.21 -3.33 16 29 C -0.13 -5.45 8.49 22.40 0.19 -5.26 16 30 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.10 3.96 7.48 -2.39 -0.02 3.94 16 32 H 0.10 4.16 8.13 -2.39 -0.02 4.14 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.93 6.89 -2.39 -0.02 1.92 16 36 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 4.57 7.71 -2.91 -0.02 4.55 16 42 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 44 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 45 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -69.45 371.02 5.06 -64.40 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.72 Total: 27.93 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.17 Total: 5.44 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.84 Total: -69.65 kcal Atomic # 8 Polarization: -69.88 SS G_CDS: -1.61 Total: -71.49 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.61 Total: 43.37 kcal Total: -69.45 5.06 -64.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764632708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.677 kcal (2) G-P(sol) polarization free energy of solvation -69.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds