Wall clock time and date at job start Wed Apr 1 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35238 * 126.07276 * 2 1 4 4 C 1.40409 * 107.86782 * 179.84795 * 3 2 1 5 5 N 1.40151 * 125.97368 * 180.16450 * 4 3 2 6 6 C 1.34777 * 119.99908 * 174.92703 * 5 4 3 7 7 S 1.71202 * 119.99904 * 5.12509 * 6 5 4 8 8 N 1.34778 * 119.99937 * 185.11923 * 6 5 4 9 9 C 1.46501 * 119.99973 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.46901 * 180.02562 * 9 8 6 11 11 C 1.50709 * 109.46858 * 179.97438 * 10 9 8 12 12 C 1.38672 * 120.41542 * 269.71899 * 11 10 9 13 13 C 1.38631 * 118.41747 * 179.78409 * 12 11 10 14 14 C 1.38231 * 119.15938 * 0.50993 * 13 12 11 15 15 N 1.31847 * 120.76439 * 359.73268 * 14 13 12 16 16 C 1.31888 * 121.72945 * 359.97438 * 15 14 13 17 17 N 1.31222 * 108.05163 * 0.42616 * 4 3 2 18 18 N 1.34963 * 126.06720 * 180.31621 * 2 1 3 19 19 C 1.46503 * 125.97820 * 359.97438 * 18 2 1 20 20 C 1.50698 * 109.47337 * 89.99837 * 19 18 2 21 21 H 1.08004 * 119.99624 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00353 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00047 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99632 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46885 * 90.00086 * 24 22 20 26 26 H 1.48497 * 109.46956 * 210.00292 * 24 22 20 27 27 H 1.48500 * 109.47080 * 330.00257 * 24 22 20 28 28 H 1.09002 * 109.46840 * 269.69218 * 1 2 3 29 29 H 1.08990 * 109.47685 * 149.68781 * 1 2 3 30 30 H 1.09007 * 109.47063 * 29.68386 * 1 2 3 31 31 H 1.08003 * 126.06170 * 0.02562 * 3 2 1 32 32 H 0.96999 * 119.99770 * 354.93918 * 5 4 3 33 33 H 0.96997 * 119.99768 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.46576 * 300.00086 * 9 8 6 35 35 H 1.09000 * 109.47223 * 59.99697 * 9 8 6 36 36 H 1.09004 * 109.47371 * 299.99348 * 10 9 8 37 37 H 1.08997 * 109.47408 * 60.00166 * 10 9 8 38 38 H 1.08000 * 120.79494 * 0.02562 * 12 11 10 39 39 H 1.07997 * 120.41645 * 180.22074 * 13 12 11 40 40 H 1.07996 * 119.61831 * 179.74513 * 14 13 12 41 41 H 1.07995 * 119.62147 * 179.97438 * 16 15 14 42 42 H 1.08994 * 109.47357 * 210.00165 * 19 18 2 43 43 H 1.09001 * 109.46500 * 330.00048 * 19 18 2 44 44 H 0.97007 * 120.00212 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6544 0.0035 5 7 4.7735 1.4747 0.0080 6 6 6.0000 0.9262 0.1143 7 16 6.1795 -0.7764 0.1117 8 7 7.0852 1.7181 0.2224 9 6 8.4185 1.1220 0.3374 10 6 9.4657 2.2320 0.4464 11 6 10.8372 1.6187 0.5653 12 6 11.3691 1.3247 1.8118 13 6 12.6324 0.7570 1.8728 14 6 13.3193 0.5146 0.6979 15 7 12.7842 0.8119 -0.4698 16 6 11.5828 1.3473 -0.5661 17 7 3.6336 -0.6578 -0.0037 18 7 2.3016 -1.0909 -0.0060 19 6 1.8499 -2.4846 -0.0132 20 6 1.6945 -2.9550 -1.4364 21 1 1.9110 -2.2831 -2.2539 22 6 1.2761 -4.2430 -1.6950 23 7 1.1409 -4.6537 -2.9370 24 14 0.9024 -5.4052 -0.2810 25 1 -0.5284 -5.2811 0.0968 26 1 1.1844 -6.8016 -0.7003 27 1 1.7542 -5.0568 0.8844 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3634 -0.8871 -0.5186 30 1 -0.3633 0.8929 -0.5089 31 1 1.9719 2.1210 0.0004 32 1 4.6772 2.4371 -0.0653 33 1 6.9834 2.6827 0.2241 34 1 8.4604 0.4947 1.2279 35 1 8.6224 0.5149 -0.5446 36 1 9.4240 2.8596 -0.4438 37 1 9.2617 2.8387 1.3286 38 1 10.8109 1.5293 2.7134 39 1 13.0762 0.5117 2.8263 40 1 14.3056 0.0765 0.7370 41 1 11.1775 1.5776 -1.5402 42 1 2.5847 -3.1073 0.4971 43 1 0.8915 -2.5585 0.5006 44 1 0.8461 -5.5598 -3.1189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767921856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:03 Heat of formation + Delta-G solvation = 142.411177 kcal Electronic energy + Delta-G solvation = -25878.925080 eV Core-core repulsion = 22152.777718 eV Total energy + Delta-G solvation = -3726.147362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68161 -40.57455 -38.80325 -36.19000 -34.02285 -33.16767 -32.33813 -31.46526 -31.11518 -29.21935 -27.19126 -26.41396 -24.79792 -23.96651 -23.67841 -22.55650 -21.91156 -20.62578 -19.35595 -18.04140 -17.43233 -17.00382 -16.95923 -16.88612 -15.92594 -15.48255 -15.37258 -15.12466 -14.85336 -14.64610 -14.17267 -14.02804 -13.69215 -13.45715 -13.44181 -13.27074 -12.59784 -12.51113 -12.44820 -12.41959 -12.04035 -11.88773 -11.73103 -11.49041 -10.96484 -10.70323 -10.66492 -10.32060 -10.19278 -9.92808 -9.82903 -9.78825 -9.47024 -9.38311 -8.67791 -8.01572 -7.87006 -7.33379 -6.53442 -6.15662 -4.17460 0.67816 0.88897 1.38780 2.07484 2.58215 2.79039 3.21987 3.26554 3.33488 3.34566 3.43842 3.51315 3.82584 4.06860 4.30794 4.32149 4.35011 4.47873 4.54992 4.60375 4.84052 4.99935 5.11145 5.19717 5.23715 5.36378 5.45010 5.47287 5.58004 5.70661 5.74144 5.84827 5.89314 5.97143 6.05269 6.26363 6.29931 6.33148 6.54049 6.58636 6.75057 6.84974 7.32693 7.41264 7.46963 7.60121 7.92181 8.41910 8.64530 8.90224 9.40297 10.97026 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002187 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.640301 B =12800.681759 C =14089.808357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.308 4.308 4 C 0.239 3.761 5 N -0.587 5.587 6 C 0.526 3.474 7 S -0.524 6.524 8 N -0.694 5.694 9 C 0.133 3.867 10 C -0.088 4.088 11 C -0.133 4.133 12 C -0.068 4.068 13 C -0.171 4.171 14 C 0.097 3.903 15 N -0.483 5.483 16 C 0.108 3.892 17 N -0.196 5.196 18 N -0.328 5.328 19 C 0.230 3.770 20 C -0.534 4.534 21 H 0.080 0.920 22 C 0.079 3.921 23 N -0.889 5.889 24 Si 0.870 3.130 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.262 1.262 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.404 0.596 33 H 0.393 0.607 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.714 19.841 10.953 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.031 4.031 3 C -0.340 4.340 4 C -0.016 4.016 5 N -0.214 5.214 6 C 0.171 3.829 7 S -0.397 6.397 8 N -0.327 5.327 9 C 0.009 3.991 10 C -0.127 4.127 11 C -0.135 4.135 12 C -0.094 4.094 13 C -0.190 4.190 14 C -0.060 4.060 15 N -0.191 5.191 16 C -0.049 4.049 17 N -0.024 5.024 18 N -0.109 5.109 19 C 0.110 3.890 20 C -0.572 4.572 21 H 0.098 0.902 22 C -0.125 4.125 23 N -0.526 5.526 24 Si 0.696 3.304 25 H -0.198 1.198 26 H -0.206 1.206 27 H -0.186 1.186 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.242 0.758 33 H 0.228 0.772 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.024 17.036 10.078 26.107 hybrid contribution -1.308 2.055 1.265 2.745 sum 15.715 19.091 11.343 27.205 Atomic orbital electron populations 1.20425 0.88126 1.04178 1.02416 1.20902 0.94719 0.87293 1.00181 1.20353 0.89303 0.98702 1.25685 1.18984 0.84477 0.90808 1.07347 1.41582 1.01512 1.09090 1.69193 1.22508 0.81095 0.96728 0.82602 1.93709 1.89596 0.88446 1.67937 1.44785 1.05581 1.08468 1.73826 1.21648 0.77336 0.95075 1.05058 1.20723 0.90485 0.97478 1.03974 1.20572 0.96830 1.01613 0.94507 1.21539 0.95066 0.95176 0.97580 1.22175 0.95870 1.00671 1.00332 1.22825 0.99807 0.95737 0.87656 1.67720 1.12146 1.10797 1.28457 1.22742 0.89878 0.93907 0.98376 1.79959 0.93891 1.06899 1.21623 1.49758 1.03451 1.06989 1.50719 1.19971 0.95137 0.74210 0.99666 1.21147 1.46751 0.99025 0.90321 0.90160 1.24789 0.94634 0.97416 0.95682 1.69873 1.46007 1.18264 1.18446 0.86928 0.79191 0.81116 0.83117 1.19793 1.20582 1.18626 0.91119 0.89685 0.90641 0.84638 0.75801 0.77169 0.89492 0.89323 0.89749 0.89975 0.84693 0.84623 0.82712 0.82664 0.92906 0.94099 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 9.89 36.00 0.36 -1.06 16 2 C 0.10 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.31 -5.26 10.74 -39.83 -0.43 -5.68 16 4 C 0.24 4.50 7.76 -154.39 -1.20 3.30 16 5 N -0.59 -8.14 5.45 -12.67 -0.07 -8.21 16 6 C 0.53 7.67 7.95 -86.92 -0.69 6.98 16 7 S -0.52 -11.00 25.81 -107.50 -2.77 -13.77 16 8 N -0.69 -6.24 5.56 -62.03 -0.34 -6.59 16 9 C 0.13 1.14 5.11 -4.04 -0.02 1.12 16 10 C -0.09 -0.45 5.49 -27.88 -0.15 -0.60 16 11 C -0.13 -0.92 5.15 -104.48 -0.54 -1.46 16 12 C -0.07 -0.44 9.86 -39.28 -0.39 -0.83 16 13 C -0.17 -1.10 10.11 -39.44 -0.40 -1.50 16 14 C 0.10 0.75 11.18 -17.55 -0.20 0.55 16 15 N -0.48 -4.77 10.36 -13.25 -0.14 -4.91 16 16 C 0.11 0.90 10.86 -17.55 -0.19 0.71 16 17 N -0.20 -4.57 9.23 31.44 0.29 -4.28 16 18 N -0.33 -7.60 3.59 -58.33 -0.21 -7.81 16 19 C 0.23 5.70 4.88 -5.19 -0.03 5.67 16 20 C -0.53 -15.35 9.94 -34.44 -0.34 -15.69 16 21 H 0.08 2.60 8.06 -52.48 -0.42 2.17 16 22 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 23 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 24 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.40 3.61 8.84 -40.82 -0.36 3.25 16 33 H 0.39 1.99 8.49 -40.82 -0.35 1.64 16 34 H 0.09 0.89 7.99 -51.93 -0.41 0.48 16 35 H 0.09 0.95 7.99 -51.93 -0.42 0.53 16 36 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 37 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.05 1.37 7.20 -51.93 -0.37 1.00 16 43 H 0.04 0.92 7.07 -51.93 -0.37 0.55 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -39.03 387.93 -12.24 -51.27 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.07 Total: 3.54 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -4.88 Total: -4.97 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.12 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -2.77 Total: -13.77 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.03 -12.24 -51.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767921856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.683 kcal (2) G-P(sol) polarization free energy of solvation -39.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds