Wall clock time and date at job start Wed Apr 1 2020 02:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46977 * 299.99950 * 3 2 1 6 6 H 1.48501 * 109.47060 * 59.99788 * 3 2 1 7 7 C 1.38815 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99665 * 179.22237 * 7 2 1 9 9 N 1.36932 * 120.00369 * 359.22191 * 7 2 1 10 10 C 1.46931 * 120.62961 * 323.84196 * 9 7 2 11 11 C 1.53189 * 108.89102 * 233.51352 * 10 9 7 12 12 C 1.53081 * 109.29554 * 305.57632 * 11 10 9 13 13 O 1.42894 * 109.45498 * 181.24403 * 12 11 10 14 14 C 1.34928 * 117.00094 * 89.78626 * 13 12 11 15 15 O 1.21644 * 119.99851 * 0.02562 * 14 13 12 16 16 C 1.41776 * 120.00095 * 179.97438 * 14 13 12 17 17 C 1.35104 * 120.00227 * 174.05692 * 16 14 13 18 18 C 1.46958 * 119.99414 * 346.74476 * 17 16 14 19 19 C 1.39978 * 120.10741 * 132.86907 * 18 17 16 20 20 C 1.37701 * 119.97627 * 179.97438 * 19 18 17 21 21 C 1.38899 * 120.25278 * 359.97438 * 20 19 18 22 22 C 1.39599 * 120.10280 * 0.02562 * 21 20 19 23 23 C 1.38075 * 119.99973 * 359.70944 * 22 21 20 24 24 O 1.36537 * 108.59433 * 180.02562 * 22 21 20 25 25 C 1.43979 * 105.45125 * 342.68352 * 24 22 21 26 26 O 1.36390 * 131.32872 * 180.02562 * 21 20 19 27 27 C 1.53044 * 109.65755 * 61.15164 * 12 11 10 28 28 C 1.46924 * 120.63217 * 143.81325 * 9 7 2 29 29 H 0.96994 * 119.99938 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58467 * 353.37035 * 10 9 7 31 31 H 1.08998 * 109.58641 * 113.65163 * 10 9 7 32 32 H 1.08997 * 109.50087 * 65.38274 * 11 10 9 33 33 H 1.09001 * 109.50005 * 185.48677 * 11 10 9 34 34 H 1.08999 * 109.33368 * 301.13952 * 12 11 10 35 35 H 1.08005 * 120.00165 * 354.05766 * 16 14 13 36 36 H 1.07995 * 120.00362 * 166.74955 * 17 16 14 37 37 H 1.08002 * 120.00821 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.87530 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.05623 * 180.29855 * 23 22 21 40 40 H 1.09006 * 110.56359 * 268.63679 * 25 24 22 41 41 H 1.08998 * 110.56147 * 145.78336 * 25 24 22 42 42 H 1.08999 * 109.49942 * 178.74990 * 27 12 11 43 43 H 1.09008 * 109.49397 * 58.65581 * 27 12 11 44 44 H 1.08999 * 109.58720 * 246.20182 * 28 9 7 45 45 H 1.08996 * 109.58483 * 6.48676 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 -0.0122 9 7 1.3257 -2.3880 0.0172 10 6 0.0762 -2.5205 0.7789 11 6 0.1942 -3.7235 1.7199 12 6 0.5739 -4.9650 0.9086 13 8 0.6566 -6.0953 1.7789 14 6 -0.4733 -6.8089 1.9651 15 8 -1.5004 -6.4795 1.4026 16 6 -0.4632 -7.9433 2.8154 17 6 -1.6174 -8.5866 3.0973 18 6 -2.9062 -7.9592 2.7733 19 6 -3.9012 -8.6959 2.1201 20 6 -5.1081 -8.1055 1.8183 21 6 -5.3435 -6.7799 2.1600 22 6 -4.3560 -6.0388 2.8115 23 6 -3.1453 -6.6251 3.1226 24 8 -4.8325 -4.7786 3.0330 25 6 -5.9605 -4.6342 2.1500 26 8 -6.4342 -5.9822 1.9751 27 6 1.9282 -4.7429 0.2312 28 6 1.8263 -3.5519 -0.7268 29 1 -0.4850 0.8400 0.0004 30 1 -0.0937 -1.6156 1.3622 31 1 -0.7559 -2.6741 0.0919 32 1 0.9654 -3.5284 2.4650 33 1 -0.7605 -3.8903 2.2187 34 1 -0.1866 -5.1462 0.1491 35 1 0.4671 -8.2933 3.2379 36 1 -1.5928 -9.5618 3.5607 37 1 -3.7224 -9.7270 1.8530 38 1 -5.8745 -8.6752 1.3139 39 1 -2.3824 -6.0540 3.6309 40 1 -5.6475 -4.2121 1.1949 41 1 -6.7299 -4.0142 2.6100 42 1 2.2064 -5.6365 -0.3275 43 1 2.6844 -4.5368 0.9888 44 1 1.1371 -3.7921 -1.5363 45 1 2.8099 -3.3266 -1.1389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770787325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:34 Heat of formation + Delta-G solvation = -67.869580 kcal Electronic energy + Delta-G solvation = -30515.407014 eV Core-core repulsion = 26272.802821 eV Total energy + Delta-G solvation = -4242.604193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18114 -40.58764 -38.47970 -37.26364 -36.33020 -35.79420 -33.77531 -32.66157 -30.60574 -30.28873 -29.80749 -29.37751 -26.19748 -25.46185 -24.37197 -23.00867 -22.65617 -22.19206 -21.51913 -19.71012 -19.21952 -18.29515 -18.01710 -17.41364 -17.21321 -16.87975 -16.31022 -15.68677 -15.44909 -14.86527 -14.65227 -14.49273 -14.27795 -13.99537 -13.79927 -13.57465 -13.50678 -13.23329 -13.01038 -12.86557 -12.85761 -12.68389 -12.43190 -12.16434 -11.53439 -11.42366 -11.22595 -11.07961 -10.98250 -10.82332 -10.62303 -10.26638 -10.26162 -10.13544 -9.96879 -9.89527 -9.66596 -9.30056 -8.63302 -8.48109 -7.98651 -6.58426 -5.80928 -3.34919 0.34423 1.16833 1.42042 2.69122 3.10305 3.16912 3.35946 3.38064 3.43040 3.45148 3.54041 4.36288 4.43180 4.46432 4.65047 4.79377 4.84751 4.97076 5.00985 5.13135 5.21148 5.31093 5.39178 5.41156 5.49804 5.57834 5.65460 5.77479 5.81258 5.94583 6.00442 6.07573 6.14724 6.17923 6.25669 6.29443 6.38134 6.52209 6.58652 6.65174 6.74700 6.92745 7.01823 7.05346 7.38331 7.71857 7.78232 8.07049 8.49788 9.21541 9.79983 10.40873 11.26969 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.003093 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.239148 B = 9051.157114 C =10779.383284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.009 3.991 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.154 4.154 12 C 0.097 3.903 13 O -0.351 6.351 14 C 0.482 3.518 15 O -0.496 6.496 16 C -0.191 4.191 17 C -0.005 4.005 18 C -0.063 4.063 19 C -0.089 4.089 20 C -0.110 4.110 21 C 0.042 3.958 22 C 0.032 3.968 23 C -0.037 4.037 24 O -0.306 6.306 25 C 0.213 3.787 26 O -0.312 6.312 27 C -0.127 4.127 28 C 0.148 3.852 29 H 0.255 0.745 30 H 0.095 0.905 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.020 0.980 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.054 -19.448 6.778 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.043 3.957 13 O -0.268 6.268 14 C 0.329 3.671 15 O -0.387 6.387 16 C -0.209 4.209 17 C -0.023 4.023 18 C -0.063 4.063 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.003 4.003 22 C -0.013 4.013 23 C -0.056 4.056 24 O -0.223 6.223 25 C 0.102 3.898 26 O -0.228 6.228 27 C -0.167 4.167 28 C 0.022 3.978 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.149 0.851 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.038 0.962 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.604 -18.989 6.668 21.888 hybrid contribution 0.267 1.240 -0.174 1.280 sum -8.337 -17.749 6.495 20.657 Atomic orbital electron populations 1.69933 1.05391 1.25485 1.53916 1.25352 0.95515 0.98461 0.99627 0.86182 0.79357 0.83716 0.77299 1.20138 1.21486 1.21577 1.19196 0.90206 0.83069 1.46205 0.91758 1.44036 1.25848 1.08265 1.53470 1.20791 0.87493 0.94593 0.92068 1.22704 1.00130 0.96438 1.00060 1.22468 0.99392 0.82505 0.91376 1.86237 1.36846 1.40747 1.62981 1.20112 0.82227 0.83159 0.81621 1.90967 1.31889 1.68662 1.47150 1.21575 1.00335 0.96877 1.02144 1.22435 0.90179 0.97328 0.92395 1.18508 0.94072 0.92582 1.01142 1.20865 0.91498 0.99715 0.98598 1.19842 0.98463 0.91235 1.03299 1.20006 0.85557 0.94129 1.00608 1.19522 0.95336 0.84991 1.01415 1.19934 0.92501 0.93195 0.99949 1.87407 1.45237 1.29507 1.60119 1.25646 0.85921 0.83860 0.94403 1.87293 1.30109 1.17238 1.88143 1.22221 0.95153 0.99581 0.99707 1.20902 0.98237 0.86757 0.91943 0.93514 0.88663 0.96275 0.91987 0.93054 0.90686 0.83582 0.83310 0.84422 0.84785 0.85485 0.89510 0.85143 0.92431 0.91298 0.96234 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 10.89 55.49 0.60 -25.75 16 2 C 0.01 0.26 5.23 -17.43 -0.09 0.17 16 3 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.26 -7.09 9.54 -15.06 -0.14 -7.24 16 8 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 9 N -0.59 -15.19 2.98 -172.32 -0.51 -15.70 16 10 C 0.18 4.40 5.22 -3.71 -0.02 4.38 16 11 C -0.15 -3.23 5.71 -26.59 -0.15 -3.38 16 12 C 0.10 1.85 2.36 -26.67 -0.06 1.79 16 13 O -0.35 -5.92 9.75 -41.12 -0.40 -6.32 16 14 C 0.48 7.32 6.89 32.08 0.22 7.54 16 15 O -0.50 -8.75 11.68 -19.38 -0.23 -8.98 16 16 C -0.19 -1.98 9.83 -39.35 -0.39 -2.37 16 17 C 0.00 -0.04 9.77 -37.17 -0.36 -0.41 16 18 C -0.06 -0.71 4.27 -105.07 -0.45 -1.16 16 19 C -0.09 -0.88 9.78 -39.13 -0.38 -1.26 16 20 C -0.11 -1.22 10.04 -39.53 -0.40 -1.61 16 21 C 0.04 0.57 7.16 -38.83 -0.28 0.29 16 22 C 0.03 0.47 7.13 -39.13 -0.28 0.20 16 23 C -0.04 -0.52 6.88 -38.99 -0.27 -0.79 16 24 O -0.31 -4.65 11.41 -45.81 -0.52 -5.17 16 25 C 0.21 2.50 8.88 101.05 0.90 3.40 16 26 O -0.31 -4.11 11.39 -45.32 -0.52 -4.63 16 27 C -0.13 -2.34 5.73 -26.61 -0.15 -2.49 16 28 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.10 2.64 6.16 -51.93 -0.32 2.32 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.53 7.11 -51.93 -0.37 1.16 16 35 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.13 1.84 7.48 -52.49 -0.39 1.45 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -33.58 372.12 -9.44 -43.02 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.11 Total: 1.08 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.33 Total: 0.20 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.09 Total: -41.45 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.67 Total: -25.10 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.58 -9.44 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770787325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.854 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds