Wall clock time and date at job start Wed Apr 1 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46977 * 299.99950 * 3 2 1 6 6 H 1.48501 * 109.47060 * 59.99788 * 3 2 1 7 7 C 1.38815 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99665 * 179.22237 * 7 2 1 9 9 N 1.36932 * 120.00369 * 359.22191 * 7 2 1 10 10 C 1.46931 * 120.62961 * 323.84196 * 9 7 2 11 11 C 1.53189 * 108.89102 * 233.51352 * 10 9 7 12 12 C 1.53081 * 109.29554 * 305.57632 * 11 10 9 13 13 O 1.42894 * 109.45498 * 181.24403 * 12 11 10 14 14 C 1.34928 * 117.00094 * 89.78626 * 13 12 11 15 15 O 1.21644 * 119.99851 * 0.02562 * 14 13 12 16 16 C 1.41776 * 120.00095 * 179.97438 * 14 13 12 17 17 C 1.35104 * 120.00227 * 174.05692 * 16 14 13 18 18 C 1.46958 * 119.99414 * 346.74476 * 17 16 14 19 19 C 1.39978 * 120.10741 * 132.86907 * 18 17 16 20 20 C 1.37701 * 119.97627 * 179.97438 * 19 18 17 21 21 C 1.38899 * 120.25278 * 359.97438 * 20 19 18 22 22 C 1.39599 * 120.10280 * 0.02562 * 21 20 19 23 23 C 1.38075 * 119.99973 * 359.70944 * 22 21 20 24 24 O 1.36537 * 108.59433 * 180.02562 * 22 21 20 25 25 C 1.43979 * 105.45125 * 342.68352 * 24 22 21 26 26 O 1.36390 * 131.32872 * 180.02562 * 21 20 19 27 27 C 1.53044 * 109.65755 * 61.15164 * 12 11 10 28 28 C 1.46924 * 120.63217 * 143.81325 * 9 7 2 29 29 H 0.96994 * 119.99938 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58467 * 353.37035 * 10 9 7 31 31 H 1.08998 * 109.58641 * 113.65163 * 10 9 7 32 32 H 1.08997 * 109.50087 * 65.38274 * 11 10 9 33 33 H 1.09001 * 109.50005 * 185.48677 * 11 10 9 34 34 H 1.08999 * 109.33368 * 301.13952 * 12 11 10 35 35 H 1.08005 * 120.00165 * 354.05766 * 16 14 13 36 36 H 1.07995 * 120.00362 * 166.74955 * 17 16 14 37 37 H 1.08002 * 120.00821 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.87530 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.05623 * 180.29855 * 23 22 21 40 40 H 1.09006 * 110.56359 * 268.63679 * 25 24 22 41 41 H 1.08998 * 110.56147 * 145.78336 * 25 24 22 42 42 H 1.08999 * 109.49942 * 178.74990 * 27 12 11 43 43 H 1.09008 * 109.49397 * 58.65581 * 27 12 11 44 44 H 1.08999 * 109.58720 * 246.20182 * 28 9 7 45 45 H 1.08996 * 109.58483 * 6.48676 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 -0.0122 9 7 1.3257 -2.3880 0.0172 10 6 0.0762 -2.5205 0.7789 11 6 0.1942 -3.7235 1.7199 12 6 0.5739 -4.9650 0.9086 13 8 0.6566 -6.0953 1.7789 14 6 -0.4733 -6.8089 1.9651 15 8 -1.5004 -6.4795 1.4026 16 6 -0.4632 -7.9433 2.8154 17 6 -1.6174 -8.5866 3.0973 18 6 -2.9062 -7.9592 2.7733 19 6 -3.9012 -8.6959 2.1201 20 6 -5.1081 -8.1055 1.8183 21 6 -5.3435 -6.7799 2.1600 22 6 -4.3560 -6.0388 2.8115 23 6 -3.1453 -6.6251 3.1226 24 8 -4.8325 -4.7786 3.0330 25 6 -5.9605 -4.6342 2.1500 26 8 -6.4342 -5.9822 1.9751 27 6 1.9282 -4.7429 0.2312 28 6 1.8263 -3.5519 -0.7268 29 1 -0.4850 0.8400 0.0004 30 1 -0.0937 -1.6156 1.3622 31 1 -0.7559 -2.6741 0.0919 32 1 0.9654 -3.5284 2.4650 33 1 -0.7605 -3.8903 2.2187 34 1 -0.1866 -5.1462 0.1491 35 1 0.4671 -8.2933 3.2379 36 1 -1.5928 -9.5618 3.5607 37 1 -3.7224 -9.7270 1.8530 38 1 -5.8745 -8.6752 1.3139 39 1 -2.3824 -6.0540 3.6309 40 1 -5.6475 -4.2121 1.1949 41 1 -6.7299 -4.0142 2.6100 42 1 2.2064 -5.6365 -0.3275 43 1 2.6844 -4.5368 0.9888 44 1 1.1371 -3.7921 -1.5363 45 1 2.8099 -3.3266 -1.1389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770787325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:33 Heat of formation + Delta-G solvation = -87.619977 kcal Electronic energy + Delta-G solvation = -30516.263455 eV Core-core repulsion = 26272.802821 eV Total energy + Delta-G solvation = -4243.460634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.15073 -41.82562 -39.65833 -38.67993 -37.37341 -37.23837 -34.73058 -34.51505 -32.11543 -31.58358 -31.49314 -30.44491 -27.46296 -26.88533 -25.66153 -24.09395 -23.97674 -23.82890 -22.93812 -21.11519 -20.62742 -19.34724 -18.96138 -18.90511 -18.40457 -18.26766 -17.41533 -16.99351 -16.84509 -16.56656 -15.77305 -15.56536 -15.43435 -15.40601 -15.05947 -14.97274 -14.89868 -14.54569 -14.44103 -14.16344 -14.06617 -13.97178 -13.69502 -13.31657 -13.06607 -12.93494 -12.86745 -12.71188 -12.39717 -12.28631 -12.13362 -11.99939 -11.93183 -11.87747 -11.53619 -11.31211 -11.01116 -10.68532 -10.59857 -9.62180 -8.92609 -8.65792 -7.92410 -5.50790 -0.53118 0.22268 0.51872 1.45350 1.45991 1.57465 1.74576 1.95232 2.08130 2.46779 2.47655 2.62987 3.26003 3.41484 3.56587 3.63514 3.74866 3.78558 3.89149 3.94748 3.99508 4.06468 4.14357 4.18008 4.21382 4.37364 4.47952 4.55106 4.58482 4.70582 4.78127 4.86200 4.86922 4.95005 5.00320 5.04504 5.06547 5.14424 5.23509 5.30026 5.36006 5.38175 5.50750 5.59395 5.61095 5.70462 6.08644 6.39038 6.85657 7.10295 7.75497 8.32698 9.14246 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.003093 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.239148 B = 9051.157114 C =10779.383284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.046 4.046 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.269 4.269 8 H 0.072 0.928 9 N -0.612 5.612 10 C 0.188 3.812 11 C -0.138 4.138 12 C 0.109 3.891 13 O -0.350 6.350 14 C 0.475 3.525 15 O -0.530 6.530 16 C -0.210 4.210 17 C 0.029 3.971 18 C -0.073 4.073 19 C -0.075 4.075 20 C -0.110 4.110 21 C 0.019 3.981 22 C -0.005 4.005 23 C -0.058 4.058 24 O -0.336 6.336 25 C 0.207 3.793 26 O -0.319 6.319 27 C -0.114 4.114 28 C 0.144 3.856 29 H 0.251 0.749 30 H 0.061 0.939 31 H -0.010 1.010 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.180 0.820 36 H 0.207 0.793 37 H 0.185 0.815 38 H 0.162 0.838 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.165 0.835 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.015 0.985 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -22.849 7.165 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.242 4.242 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.399 4.399 8 H 0.089 0.911 9 N -0.335 5.335 10 C 0.062 3.938 11 C -0.178 4.178 12 C 0.053 3.947 13 O -0.267 6.267 14 C 0.324 3.676 15 O -0.422 6.422 16 C -0.229 4.229 17 C 0.012 3.988 18 C -0.074 4.074 19 C -0.093 4.093 20 C -0.128 4.128 21 C -0.026 4.026 22 C -0.049 4.049 23 C -0.077 4.077 24 O -0.253 6.253 25 C 0.096 3.904 26 O -0.236 6.236 27 C -0.153 4.153 28 C 0.019 3.981 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.008 0.992 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.197 0.803 36 H 0.224 0.776 37 H 0.202 0.798 38 H 0.179 0.821 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.182 0.818 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.033 0.967 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.302 -22.428 7.057 24.620 hybrid contribution -0.226 2.205 -0.299 2.236 sum -7.528 -20.223 6.759 22.613 Atomic orbital electron populations 1.70127 1.07001 1.25935 1.55277 1.26165 0.96282 1.01962 0.99758 0.85106 0.78763 0.79213 0.76775 1.18519 1.21651 1.21740 1.19569 0.90740 0.84044 1.45506 0.91070 1.44280 1.25625 1.09197 1.54447 1.20433 0.86908 0.94786 0.91664 1.22429 0.99923 0.96196 0.99228 1.22068 0.99318 0.82444 0.90853 1.86241 1.37981 1.39945 1.62551 1.21107 0.81091 0.83685 0.81757 1.90975 1.32679 1.69752 1.48789 1.21747 1.02687 0.95378 1.03049 1.22994 0.87759 0.98360 0.89710 1.18968 0.96006 0.91614 1.00771 1.21422 0.90107 1.01387 0.96391 1.20368 0.99747 0.90239 1.02467 1.20410 0.85419 0.95248 1.01482 1.19915 0.96558 0.85255 1.03179 1.20080 0.91964 0.94656 1.00980 1.87340 1.46473 1.30336 1.61173 1.25961 0.86083 0.83933 0.94440 1.87247 1.30296 1.17655 1.88365 1.22038 0.94529 0.99427 0.99285 1.21062 0.98352 0.86419 0.92301 0.93979 0.92043 0.99225 0.92000 0.93568 0.92477 0.80278 0.77598 0.79805 0.82056 0.87326 0.89733 0.81818 0.89019 0.91038 0.96716 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.04 10.89 21.65 0.24 -56.81 16 2 C -0.05 -2.63 5.23 84.86 0.44 -2.18 16 3 Si 0.97 45.27 29.55 68.60 2.03 47.29 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 7 C -0.27 -15.03 9.54 84.04 0.80 -14.23 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 9 N -0.61 -32.09 2.98 -699.10 -2.09 -34.18 16 10 C 0.19 9.93 5.22 86.36 0.45 10.38 16 11 C -0.14 -6.04 5.71 30.68 0.18 -5.86 16 12 C 0.11 4.15 2.36 30.64 0.07 4.22 16 13 O -0.35 -11.44 9.75 -58.44 -0.57 -12.01 16 14 C 0.47 13.91 6.89 68.70 0.47 14.39 16 15 O -0.53 -18.88 11.68 19.36 0.23 -18.66 16 16 C -0.21 -3.68 9.83 22.42 0.22 -3.46 16 17 C 0.03 0.38 9.77 23.83 0.23 0.61 16 18 C -0.07 -1.50 4.27 -20.15 -0.09 -1.59 16 19 C -0.08 -1.23 9.78 22.56 0.22 -1.01 16 20 C -0.11 -2.22 10.04 22.30 0.22 -2.00 16 21 C 0.02 0.52 7.16 22.76 0.16 0.68 16 22 C -0.01 -0.17 7.13 22.56 0.16 -0.01 16 23 C -0.06 -1.67 6.88 22.65 0.16 -1.52 16 24 O -0.34 -11.11 11.41 -76.49 -0.87 -11.98 16 25 C 0.21 5.19 8.88 113.37 1.01 6.20 16 26 O -0.32 -8.70 11.39 -74.76 -0.85 -9.55 16 27 C -0.11 -4.02 5.73 30.67 0.18 -3.84 16 28 C 0.14 6.13 6.52 86.36 0.56 6.69 16 29 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.06 3.63 6.16 -2.39 -0.01 3.62 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 2.40 7.11 -2.39 -0.02 2.38 16 35 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.21 0.31 8.06 -2.91 -0.02 0.29 16 37 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.11 3.38 7.48 -2.91 -0.02 3.36 16 40 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.16 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 44 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 2.96 7.93 -2.39 -0.02 2.94 16 Total: -1.00 -78.78 372.12 4.57 -74.21 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.01 Total: 14.22 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.45 Total: 7.46 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -1.85 Total: -90.98 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.07 Total: -52.20 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -78.78 4.57 -74.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770787325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.407 kcal (2) G-P(sol) polarization free energy of solvation -78.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds