Wall clock time and date at job start Wed Apr 1 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86803 * 120.00022 * 2 1 4 4 H 1.48498 * 109.46524 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47169 * 299.99730 * 3 2 1 6 6 H 1.48501 * 109.47148 * 59.99906 * 3 2 1 7 7 C 1.39016 * 119.99394 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99694 * 164.41231 * 7 2 1 9 9 N 1.36871 * 120.00469 * 344.40674 * 7 2 1 10 10 C 1.38250 * 125.62268 * 138.41701 * 9 7 2 11 11 C 1.46720 * 125.44623 * 359.96173 * 10 9 7 12 12 O 1.21594 * 119.99746 * 175.00558 * 11 10 9 13 13 O 1.34862 * 119.99927 * 355.00763 * 11 10 9 14 14 C 1.45204 * 116.99633 * 184.79606 * 13 11 10 15 15 C 1.53006 * 109.47051 * 184.23239 * 14 13 11 16 16 C 1.53000 * 109.47156 * 180.02562 * 15 14 13 17 17 O 1.42970 * 109.46715 * 294.99473 * 16 15 14 18 18 C 1.43095 * 113.76740 * 181.20429 * 17 16 15 19 19 C 1.53269 * 108.93936 * 57.97206 * 18 17 16 20 20 C 1.53256 * 108.84438 * 305.47678 * 19 18 17 21 21 O 1.42969 * 109.46986 * 174.99943 * 16 15 14 22 22 C 1.36216 * 109.10473 * 180.22429 * 10 9 7 23 23 C 1.41654 * 107.74305 * 359.61655 * 22 10 9 24 24 C 1.40045 * 133.34162 * 180.17524 * 23 22 10 25 25 C 1.36569 * 119.83042 * 180.29135 * 24 23 22 26 26 C 1.38870 * 120.60347 * 359.95292 * 25 24 23 27 27 C 1.37844 * 120.63190 * 0.02562 * 26 25 24 28 28 C 1.37817 * 125.62203 * 318.39814 * 9 7 2 29 29 H 0.97007 * 119.99339 * 5.05591 * 1 2 3 30 30 H 1.09003 * 109.47077 * 304.22658 * 14 13 11 31 31 H 1.08998 * 109.47258 * 64.23205 * 14 13 11 32 32 H 1.09003 * 109.46705 * 299.99646 * 15 14 13 33 33 H 1.08998 * 109.47117 * 59.99880 * 15 14 13 34 34 H 1.08993 * 109.47051 * 54.99557 * 16 15 14 35 35 H 1.08995 * 109.55906 * 298.13539 * 18 17 16 36 36 H 1.08994 * 109.55867 * 177.80860 * 18 17 16 37 37 H 1.08995 * 109.57132 * 185.66143 * 19 18 17 38 38 H 1.08998 * 109.67657 * 65.34997 * 19 18 17 39 39 H 1.09009 * 109.55688 * 294.68279 * 20 19 18 40 40 H 1.09002 * 109.64287 * 174.42052 * 20 19 18 41 41 H 1.08000 * 126.12443 * 179.74064 * 22 10 9 42 42 H 1.07991 * 120.08320 * 0.24383 * 24 23 22 43 43 H 1.07998 * 119.69969 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.67888 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.08686 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3463 0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8887 2.3965 1.2125 7 6 2.0084 -1.2040 0.0005 8 1 3.0587 -1.2214 -0.2508 9 7 1.3618 -2.3674 0.3197 10 6 1.5223 -3.5804 -0.3237 11 6 2.4146 -3.8285 -1.4617 12 8 2.5474 -4.9567 -1.8955 13 8 3.0875 -2.8053 -2.0265 14 6 3.8681 -3.1051 -3.2137 15 6 4.6383 -1.8560 -3.6466 16 6 5.4602 -2.1717 -4.8978 17 8 6.4611 -3.1413 -4.5783 18 6 7.3044 -3.4849 -5.6821 19 6 7.9836 -2.2138 -6.2038 20 6 6.9056 -1.1737 -6.5273 21 8 6.0877 -0.9769 -5.3699 22 6 0.7153 -4.5071 0.2640 23 6 0.0235 -3.8680 1.3221 24 6 -0.9181 -4.3096 2.2600 25 6 -1.4231 -3.4349 3.1792 26 6 -1.0109 -2.1088 3.1942 27 6 -0.0850 -1.6508 2.2815 28 6 0.4437 -2.5227 1.3356 29 1 -0.4849 0.8369 -0.0740 30 1 4.5720 -3.9075 -2.9926 31 1 3.2015 -3.4177 -4.0174 32 1 3.9344 -1.0536 -3.8676 33 1 5.3049 -1.5434 -2.8428 34 1 4.8044 -2.5683 -5.6728 35 1 6.7039 -3.9297 -6.4755 36 1 8.0630 -4.1957 -5.3543 37 1 8.5495 -2.4462 -7.1059 38 1 8.6562 -1.8183 -5.4426 39 1 6.2899 -1.5309 -7.3529 40 1 7.3775 -0.2312 -6.8052 41 1 0.6213 -5.5438 -0.0238 42 1 -1.2445 -5.3390 2.2559 43 1 -2.1494 -3.7776 3.9013 44 1 -1.4197 -1.4300 3.9280 45 1 0.2290 -0.6176 2.3009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777079381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:48 Heat of formation + Delta-G solvation = -123.796262 kcal Electronic energy + Delta-G solvation = -30043.391629 eV Core-core repulsion = 25798.362273 eV Total energy + Delta-G solvation = -4245.029356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.50244 -40.18220 -39.21445 -36.11650 -35.91449 -35.84003 -33.77856 -33.57220 -31.20594 -30.73239 -29.04707 -28.20918 -26.29590 -25.66253 -24.92189 -23.37909 -21.73198 -21.37918 -21.00176 -20.38149 -19.23484 -18.01848 -17.63907 -17.14076 -16.63283 -16.48252 -15.79164 -15.68872 -15.34567 -15.15563 -15.01715 -14.81488 -14.64973 -13.85079 -13.57696 -13.52487 -13.18193 -13.02066 -12.98892 -12.85767 -12.43489 -11.96482 -11.87550 -11.72964 -11.71556 -11.58786 -11.35798 -11.28571 -11.22528 -11.06739 -10.76260 -10.55884 -10.30257 -10.22432 -10.04291 -9.97967 -9.89517 -9.79531 -9.20348 -8.66583 -7.17204 -6.88084 -6.61806 -4.48105 1.68170 2.75611 2.90232 2.96189 3.00177 3.03600 3.09225 3.39172 3.67388 3.78660 4.12745 4.38738 4.40315 4.53337 4.61608 4.68061 4.77138 4.89268 5.02005 5.06849 5.08255 5.17343 5.23656 5.43310 5.44493 5.54194 5.69234 5.75924 5.86060 5.95860 6.00319 6.09637 6.17671 6.40052 6.54028 6.64026 6.65109 6.84551 6.91362 6.99280 7.02675 7.08726 7.15641 7.49211 7.57809 7.66882 7.89828 8.01517 8.36498 8.47661 8.80192 9.27835 10.19471 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.003010 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.790749 B = 9300.888917 C =11000.499071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.055 3.945 3 Si 0.929 3.071 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.342 4.342 8 H 0.117 0.883 9 N -0.238 5.238 10 C -0.019 4.019 11 C 0.547 3.453 12 O -0.527 6.527 13 O -0.330 6.330 14 C 0.071 3.929 15 C -0.106 4.106 16 C 0.254 3.746 17 O -0.388 6.388 18 C 0.056 3.944 19 C -0.193 4.193 20 C 0.057 3.943 21 O -0.388 6.388 22 C -0.161 4.161 23 C -0.132 4.132 24 C -0.085 4.085 25 C -0.157 4.157 26 C -0.148 4.148 27 C -0.051 4.051 28 C 0.094 3.906 29 H 0.282 0.718 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 -0.935 -9.129 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.158 4.158 3 Si 0.753 3.247 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.470 4.470 8 H 0.134 0.866 9 N 0.101 4.899 10 C -0.132 4.132 11 C 0.395 3.605 12 O -0.418 6.418 13 O -0.246 6.246 14 C -0.003 4.003 15 C -0.143 4.143 16 C 0.159 3.841 17 O -0.309 6.309 18 C -0.021 4.021 19 C -0.231 4.231 20 C -0.020 4.020 21 O -0.309 6.309 22 C -0.189 4.189 23 C -0.136 4.136 24 C -0.104 4.104 25 C -0.176 4.176 26 C -0.169 4.169 27 C -0.071 4.071 28 C -0.022 4.022 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.151 0.849 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.613 -0.691 -9.108 13.261 hybrid contribution 0.362 0.663 -0.829 1.122 sum 9.975 -0.029 -9.938 14.081 Atomic orbital electron populations 1.69963 1.06500 1.29410 1.38988 1.25687 0.95459 1.00654 0.94012 0.85820 0.80376 0.79938 0.78583 1.18248 1.19851 1.19731 1.19968 0.95729 0.81954 1.49323 0.86593 1.40105 1.26565 1.05981 1.17291 1.19081 1.06003 0.89675 0.98451 1.20049 0.77027 0.82119 0.81313 1.90787 1.63737 1.23507 1.63771 1.86829 1.58114 1.38991 1.40683 1.22666 0.94066 0.97254 0.86345 1.21338 0.98386 0.98562 0.96025 1.23203 0.86677 0.78577 0.95629 1.88188 1.46969 1.59444 1.36254 1.22652 0.93834 0.96058 0.89549 1.22798 0.99683 0.97533 1.03113 1.22652 0.91741 1.00126 0.87457 1.88135 1.64411 1.32681 1.45644 1.20297 1.00850 0.98215 0.99526 1.17936 1.02359 0.93547 0.99788 1.20047 0.97010 0.98283 0.95077 1.20279 1.02667 0.94092 1.00605 1.20567 1.00200 0.95658 1.00482 1.20070 0.96116 0.98021 0.92865 1.18171 0.97850 0.93839 0.92319 0.90727 0.90541 0.91722 0.88124 0.88890 0.92260 0.92783 0.88199 0.89757 0.89867 0.92814 0.88212 0.84873 0.87679 0.87845 0.87611 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.86 11.11 55.50 0.62 -20.24 16 2 C 0.06 1.33 4.50 -17.47 -0.08 1.25 16 3 Si 0.93 18.58 29.58 -169.99 -5.03 13.55 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.34 -8.66 8.62 -15.01 -0.13 -8.79 16 8 H 0.12 2.87 7.03 -52.48 -0.37 2.50 16 9 N -0.24 -6.17 2.81 -56.10 -0.16 -6.32 16 10 C -0.02 -0.47 6.76 -82.27 -0.56 -1.02 16 11 C 0.55 12.65 7.90 34.16 0.27 12.92 16 12 O -0.53 -12.29 16.56 -19.34 -0.32 -12.61 16 13 O -0.33 -6.98 8.11 -40.93 -0.33 -7.31 16 14 C 0.07 1.19 5.46 37.16 0.20 1.39 16 15 C -0.11 -1.54 5.67 -26.73 -0.15 -1.69 16 16 C 0.25 3.23 3.25 37.16 0.12 3.35 16 17 O -0.39 -5.03 10.08 -59.03 -0.59 -5.62 16 18 C 0.06 0.50 6.96 37.30 0.26 0.76 16 19 C -0.19 -1.49 6.35 -26.46 -0.17 -1.66 16 20 C 0.06 0.50 6.96 37.29 0.26 0.75 16 21 O -0.39 -4.92 10.54 -59.03 -0.62 -5.54 16 22 C -0.16 -3.79 10.55 -39.01 -0.41 -4.20 16 23 C -0.13 -3.12 6.16 -106.89 -0.66 -3.78 16 24 C -0.09 -1.74 10.06 -39.51 -0.40 -2.14 16 25 C -0.16 -3.02 9.97 -39.95 -0.40 -3.42 16 26 C -0.15 -3.01 10.02 -39.49 -0.40 -3.41 16 27 C -0.05 -1.20 8.63 -39.41 -0.34 -1.54 16 28 C 0.09 2.38 6.06 -83.84 -0.51 1.87 16 29 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.08 1.28 7.68 -51.93 -0.40 0.88 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.13 2.82 8.06 -52.49 -0.42 2.40 16 42 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 44 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 45 H 0.11 2.71 6.65 -52.49 -0.35 2.36 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -30.20 377.31 -10.01 -40.21 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.17 Total: 7.55 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.08 Total: -9.34 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.46 Total: -26.57 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.87 Total: -31.09 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.20 -10.01 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777079381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.588 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds