Wall clock time and date at job start Wed Apr 1 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86803 * 120.00022 * 2 1 4 4 H 1.48498 * 109.46524 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47169 * 299.99730 * 3 2 1 6 6 H 1.48501 * 109.47148 * 59.99906 * 3 2 1 7 7 C 1.39016 * 119.99394 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99694 * 164.41231 * 7 2 1 9 9 N 1.36871 * 120.00469 * 344.40674 * 7 2 1 10 10 C 1.38250 * 125.62268 * 138.41701 * 9 7 2 11 11 C 1.46720 * 125.44623 * 359.96173 * 10 9 7 12 12 O 1.21594 * 119.99746 * 175.00558 * 11 10 9 13 13 O 1.34862 * 119.99927 * 355.00763 * 11 10 9 14 14 C 1.45204 * 116.99633 * 184.79606 * 13 11 10 15 15 C 1.53006 * 109.47051 * 184.23239 * 14 13 11 16 16 C 1.53000 * 109.47156 * 180.02562 * 15 14 13 17 17 O 1.42970 * 109.46715 * 294.99473 * 16 15 14 18 18 C 1.43095 * 113.76740 * 181.20429 * 17 16 15 19 19 C 1.53269 * 108.93936 * 57.97206 * 18 17 16 20 20 C 1.53256 * 108.84438 * 305.47678 * 19 18 17 21 21 O 1.42969 * 109.46986 * 174.99943 * 16 15 14 22 22 C 1.36216 * 109.10473 * 180.22429 * 10 9 7 23 23 C 1.41654 * 107.74305 * 359.61655 * 22 10 9 24 24 C 1.40045 * 133.34162 * 180.17524 * 23 22 10 25 25 C 1.36569 * 119.83042 * 180.29135 * 24 23 22 26 26 C 1.38870 * 120.60347 * 359.95292 * 25 24 23 27 27 C 1.37844 * 120.63190 * 0.02562 * 26 25 24 28 28 C 1.37817 * 125.62203 * 318.39814 * 9 7 2 29 29 H 0.97007 * 119.99339 * 5.05591 * 1 2 3 30 30 H 1.09003 * 109.47077 * 304.22658 * 14 13 11 31 31 H 1.08998 * 109.47258 * 64.23205 * 14 13 11 32 32 H 1.09003 * 109.46705 * 299.99646 * 15 14 13 33 33 H 1.08998 * 109.47117 * 59.99880 * 15 14 13 34 34 H 1.08993 * 109.47051 * 54.99557 * 16 15 14 35 35 H 1.08995 * 109.55906 * 298.13539 * 18 17 16 36 36 H 1.08994 * 109.55867 * 177.80860 * 18 17 16 37 37 H 1.08995 * 109.57132 * 185.66143 * 19 18 17 38 38 H 1.08998 * 109.67657 * 65.34997 * 19 18 17 39 39 H 1.09009 * 109.55688 * 294.68279 * 20 19 18 40 40 H 1.09002 * 109.64287 * 174.42052 * 20 19 18 41 41 H 1.08000 * 126.12443 * 179.74064 * 22 10 9 42 42 H 1.07991 * 120.08320 * 0.24383 * 24 23 22 43 43 H 1.07998 * 119.69969 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.67888 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.08686 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3463 0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8887 2.3965 1.2125 7 6 2.0084 -1.2040 0.0005 8 1 3.0587 -1.2214 -0.2508 9 7 1.3618 -2.3674 0.3197 10 6 1.5223 -3.5804 -0.3237 11 6 2.4146 -3.8285 -1.4617 12 8 2.5474 -4.9567 -1.8955 13 8 3.0875 -2.8053 -2.0265 14 6 3.8681 -3.1051 -3.2137 15 6 4.6383 -1.8560 -3.6466 16 6 5.4602 -2.1717 -4.8978 17 8 6.4611 -3.1413 -4.5783 18 6 7.3044 -3.4849 -5.6821 19 6 7.9836 -2.2138 -6.2038 20 6 6.9056 -1.1737 -6.5273 21 8 6.0877 -0.9769 -5.3699 22 6 0.7153 -4.5071 0.2640 23 6 0.0235 -3.8680 1.3221 24 6 -0.9181 -4.3096 2.2600 25 6 -1.4231 -3.4349 3.1792 26 6 -1.0109 -2.1088 3.1942 27 6 -0.0850 -1.6508 2.2815 28 6 0.4437 -2.5227 1.3356 29 1 -0.4849 0.8369 -0.0740 30 1 4.5720 -3.9075 -2.9926 31 1 3.2015 -3.4177 -4.0174 32 1 3.9344 -1.0536 -3.8676 33 1 5.3049 -1.5434 -2.8428 34 1 4.8044 -2.5683 -5.6728 35 1 6.7039 -3.9297 -6.4755 36 1 8.0630 -4.1957 -5.3543 37 1 8.5495 -2.4462 -7.1059 38 1 8.6562 -1.8183 -5.4426 39 1 6.2899 -1.5309 -7.3529 40 1 7.3775 -0.2312 -6.8052 41 1 0.6213 -5.5438 -0.0238 42 1 -1.2445 -5.3390 2.2559 43 1 -2.1494 -3.7776 3.9013 44 1 -1.4197 -1.4300 3.9280 45 1 0.2290 -0.6176 2.3009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777079381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:47 Heat of formation + Delta-G solvation = -138.886630 kcal Electronic energy + Delta-G solvation = -30044.045996 eV Core-core repulsion = 25798.362273 eV Total energy + Delta-G solvation = -4245.683723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25945 -41.16201 -40.81430 -37.74537 -37.56496 -36.78330 -35.39592 -34.76101 -32.53287 -32.21062 -30.73949 -29.92758 -27.10402 -26.85395 -26.73528 -24.91708 -22.86635 -22.73583 -22.21131 -22.03729 -21.01256 -19.78395 -18.88268 -18.46787 -17.93065 -17.39259 -17.34065 -17.24483 -16.88084 -16.47122 -16.35351 -15.87154 -15.76575 -15.45279 -15.11195 -14.72223 -14.71054 -14.55692 -14.35920 -14.20884 -13.87716 -13.61734 -13.48427 -13.11221 -13.06666 -12.92223 -12.73120 -12.44975 -12.35593 -12.16529 -12.15143 -12.09647 -11.94509 -11.73274 -11.55566 -11.47717 -11.05306 -10.99111 -10.73903 -10.43741 -8.94553 -8.68481 -8.38869 -6.38185 -0.07329 1.08950 1.17033 1.37073 1.39459 1.51417 1.54217 2.10558 2.31688 2.54703 2.58116 2.79926 2.87183 3.34568 3.63793 3.76311 3.77826 3.80363 3.88392 3.97742 4.11964 4.19923 4.22486 4.33029 4.41335 4.43211 4.47011 4.51218 4.69262 4.72455 4.78671 4.80893 4.86283 4.86884 4.97937 5.09394 5.16030 5.20582 5.31873 5.33490 5.44503 5.75559 5.83064 5.90222 5.95774 6.07328 6.15867 6.29246 6.57643 6.70476 6.98687 7.44484 8.39451 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.003010 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.790749 B = 9300.888917 C =11000.499071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.023 3.977 3 Si 0.992 3.008 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.366 4.366 8 H 0.109 0.891 9 N -0.258 5.258 10 C -0.050 4.050 11 C 0.547 3.453 12 O -0.537 6.537 13 O -0.342 6.342 14 C 0.071 3.929 15 C -0.100 4.100 16 C 0.259 3.741 17 O -0.415 6.415 18 C 0.044 3.956 19 C -0.187 4.187 20 C 0.046 3.954 21 O -0.412 6.412 22 C -0.162 4.162 23 C -0.154 4.154 24 C -0.086 4.086 25 C -0.151 4.151 26 C -0.132 4.132 27 C -0.086 4.086 28 C 0.068 3.932 29 H 0.286 0.714 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 -1.098 -9.208 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.126 0.874 9 N 0.079 4.921 10 C -0.163 4.163 11 C 0.396 3.604 12 O -0.429 6.429 13 O -0.258 6.258 14 C -0.003 4.003 15 C -0.138 4.138 16 C 0.165 3.835 17 O -0.336 6.336 18 C -0.032 4.032 19 C -0.225 4.225 20 C -0.030 4.030 21 O -0.333 6.333 22 C -0.190 4.190 23 C -0.158 4.158 24 C -0.105 4.105 25 C -0.170 4.170 26 C -0.152 4.152 27 C -0.106 4.106 28 C -0.048 4.048 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.366 -0.861 -9.201 13.158 hybrid contribution 0.411 0.615 -0.767 1.066 sum 9.778 -0.245 -9.969 13.966 Atomic orbital electron populations 1.70040 1.07831 1.30300 1.40017 1.26471 0.96080 1.03193 0.92971 0.84912 0.79088 0.75896 0.78886 1.18065 1.19141 1.18923 1.20098 0.95710 0.82769 1.50732 0.87372 1.40287 1.27465 1.06275 1.18083 1.19542 1.07153 0.90050 0.99544 1.19943 0.77020 0.82295 0.81167 1.90751 1.64286 1.23702 1.64124 1.86805 1.58190 1.38635 1.42150 1.22908 0.93904 0.98426 0.85069 1.21265 0.98202 0.97402 0.96890 1.23015 0.86903 0.78911 0.94718 1.88144 1.47606 1.59459 1.38398 1.22969 0.93965 0.97108 0.89131 1.22767 0.99239 0.96422 1.04034 1.22981 0.91923 1.01476 0.86599 1.88089 1.65171 1.32757 1.47309 1.20609 1.00306 0.98810 0.99276 1.18360 1.03537 0.93083 1.00821 1.20493 0.95675 1.00278 0.94040 1.20779 1.02473 0.93106 1.00594 1.21044 0.97943 0.96965 0.99282 1.20158 0.98468 0.97453 0.94528 1.18693 0.98125 0.95184 0.92755 0.90408 0.90756 0.90468 0.88243 0.90256 0.90540 0.91226 0.87062 0.86680 0.91048 0.91158 0.86705 0.83109 0.84347 0.83275 0.84359 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.64 11.11 21.67 0.24 -44.40 16 2 C 0.02 1.13 4.50 84.95 0.38 1.51 16 3 Si 0.99 38.92 29.58 68.60 2.03 40.94 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.37 -19.41 8.62 84.09 0.72 -18.69 16 8 H 0.11 5.69 7.03 -2.91 -0.02 5.66 16 9 N -0.26 -13.97 2.81 -331.41 -0.93 -14.90 16 10 C -0.05 -2.59 6.76 39.88 0.27 -2.32 16 11 C 0.55 26.33 7.90 70.04 0.55 26.88 16 12 O -0.54 -25.62 16.56 19.53 0.32 -25.30 16 13 O -0.34 -15.13 8.11 -57.75 -0.47 -15.60 16 14 C 0.07 2.43 5.46 71.98 0.39 2.82 16 15 C -0.10 -3.00 5.67 30.60 0.17 -2.82 16 16 C 0.26 6.51 3.25 71.98 0.23 6.74 16 17 O -0.41 -10.62 10.08 -126.22 -1.27 -11.89 16 18 C 0.04 0.73 6.96 72.07 0.50 1.23 16 19 C -0.19 -2.51 6.35 30.77 0.20 -2.32 16 20 C 0.05 0.72 6.96 72.07 0.50 1.22 16 21 O -0.41 -10.18 10.54 -126.22 -1.33 -11.51 16 22 C -0.16 -7.74 10.55 22.64 0.24 -7.50 16 23 C -0.15 -7.27 6.16 -21.34 -0.13 -7.40 16 24 C -0.09 -3.31 10.06 22.32 0.22 -3.08 16 25 C -0.15 -5.24 9.97 22.03 0.22 -5.02 16 26 C -0.13 -5.07 10.02 22.33 0.22 -4.85 16 27 C -0.09 -4.09 8.63 22.38 0.19 -3.89 16 28 C 0.07 3.52 6.06 39.07 0.24 3.76 16 29 H 0.29 13.78 8.31 -92.70 -0.77 13.00 16 30 H 0.07 2.57 7.68 -2.39 -0.02 2.55 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 42 H 0.14 4.32 8.06 -2.92 -0.02 4.29 16 43 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 44 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 45 H 0.10 4.83 6.65 -2.91 -0.02 4.81 16 Total: -1.00 -68.03 377.31 4.73 -63.30 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 1.00 Total: 33.10 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 5.13 Total: -13.74 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.69 Total: -59.31 kcal Atomic # 8 Polarization: -61.56 SS G_CDS: -2.75 Total: -64.30 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal Total: -68.03 4.73 -63.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777079381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.589 kcal (2) G-P(sol) polarization free energy of solvation -68.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds