Wall clock time and date at job start Wed Apr 1 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00033 * 2 1 4 4 H 1.48496 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46845 * 300.00120 * 3 2 1 6 6 H 1.48497 * 109.47311 * 59.99983 * 3 2 1 7 7 C 1.37878 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00252 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99857 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46882 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00563 * 89.99927 * 10 9 7 12 12 O 1.21281 * 120.00810 * 175.26223 * 11 10 9 13 13 C 1.50702 * 119.99699 * 355.26797 * 11 10 9 14 14 O 1.45197 * 109.47230 * 179.97438 * 13 11 10 15 15 C 1.34230 * 117.00103 * 179.97438 * 14 13 11 16 16 O 1.20827 * 119.99759 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00311 * 180.27644 * 15 14 13 18 18 H 1.08999 * 109.70168 * 304.72399 * 17 15 14 19 19 C 1.53506 * 109.70453 * 65.30567 * 17 15 14 20 20 C 1.53264 * 108.14465 * 182.06051 * 19 17 15 21 21 C 1.50438 * 109.46957 * 313.23058 * 20 19 17 22 22 C 1.30683 * 122.49718 * 17.45397 * 21 20 19 23 23 O 1.35135 * 123.34634 * 359.58482 * 22 21 20 24 24 C 1.39931 * 119.99873 * 269.99579 * 10 9 7 25 25 C 1.38871 * 120.06684 * 111.85271 * 24 10 9 26 26 C 1.38119 * 119.92738 * 179.79230 * 25 24 10 27 27 C 1.38284 * 120.06512 * 0.48511 * 26 25 24 28 28 C 1.38273 * 120.14562 * 359.74361 * 27 26 25 29 29 C 1.38110 * 120.07192 * 0.02639 * 28 27 26 30 30 H 0.96999 * 119.99861 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47283 * 60.00138 * 9 7 2 32 32 H 1.08999 * 109.47129 * 299.99666 * 9 7 2 33 33 H 1.09008 * 109.47178 * 59.99585 * 13 11 10 34 34 H 1.08999 * 109.46855 * 300.00074 * 13 11 10 35 35 H 1.08992 * 109.72688 * 301.75232 * 19 17 15 36 36 H 1.09003 * 109.72479 * 62.42987 * 19 17 15 37 37 H 1.08993 * 109.48731 * 193.21622 * 20 19 17 38 38 H 1.09001 * 109.44172 * 73.21989 * 20 19 17 39 39 H 1.08010 * 118.75418 * 197.46845 * 21 20 19 40 40 H 1.08001 * 118.33150 * 179.56732 * 22 21 20 41 41 H 1.07997 * 120.03646 * 0.02562 * 25 24 10 42 42 H 1.07992 * 119.96584 * 180.22796 * 26 25 24 43 43 H 1.08003 * 119.92511 * 179.72480 * 27 26 25 44 44 H 1.08008 * 119.96342 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.03564 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6410 -4.1249 1.1666 12 8 3.3612 -5.1007 1.1684 13 6 2.2357 -3.4852 2.4695 14 8 2.8313 -4.2163 3.5735 15 6 2.5671 -3.7715 4.8121 16 8 1.8612 -2.8034 4.9685 17 6 3.1555 -4.4759 6.0074 18 1 2.8875 -5.5321 5.9801 19 6 4.6834 -4.3290 5.9944 20 6 5.2473 -5.1000 7.1929 21 6 4.4545 -4.7604 8.4255 22 6 3.2719 -4.2071 8.3694 23 8 2.6578 -3.8829 7.2101 24 6 2.6576 -4.1445 -1.2124 25 6 3.9832 -3.9785 -1.5914 26 6 4.4299 -4.5083 -2.7861 27 6 3.5561 -5.1948 -3.6092 28 6 2.2344 -5.3577 -3.2370 29 6 1.7827 -4.8344 -2.0413 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 1.1499 -3.5075 2.5630 34 1 2.5809 -2.4515 2.4895 35 1 5.0848 -4.7418 5.0689 36 1 4.9525 -3.2758 6.0754 37 1 6.2908 -4.8241 7.3445 38 1 5.1788 -6.1707 7.0003 39 1 4.8789 -4.9820 9.3937 40 1 2.7591 -3.9985 9.2967 41 1 4.6651 -3.4390 -0.9508 42 1 5.4615 -4.3828 -3.0797 43 1 3.9067 -5.6043 -4.5451 44 1 1.5546 -5.8947 -3.8819 45 1 0.7503 -4.9623 -1.7509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787040940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:10 Heat of formation + Delta-G solvation = -103.475623 kcal Electronic energy + Delta-G solvation = -29864.536046 eV Core-core repulsion = 25620.387859 eV Total energy + Delta-G solvation = -4244.148187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99325 -40.08661 -39.44383 -37.95555 -36.20886 -35.14920 -34.22079 -32.73934 -32.15791 -30.57660 -30.24175 -28.24651 -27.16188 -26.35687 -24.02614 -23.27432 -22.52631 -22.03882 -21.28925 -19.28874 -19.08852 -18.14387 -17.13794 -16.91302 -16.77585 -16.74650 -16.09672 -15.87770 -15.82528 -15.45304 -14.97897 -14.58619 -14.38084 -14.29233 -13.98939 -13.85015 -13.23249 -13.19725 -13.10419 -13.01552 -12.60549 -12.43247 -12.29738 -12.16795 -11.70200 -11.60917 -11.36208 -11.18942 -11.09955 -10.91368 -10.89048 -10.82913 -10.51814 -10.28413 -10.23099 -9.91727 -9.38265 -8.70911 -8.69911 -8.64912 -8.56784 -7.80606 -6.27684 -4.36392 1.65472 1.76985 1.96469 2.08513 2.19977 3.01703 3.19185 3.27990 3.30136 3.34917 3.76149 4.13885 4.27851 4.30522 4.52014 4.63974 4.77309 4.90873 5.01841 5.07195 5.08779 5.25391 5.27847 5.34122 5.37479 5.41961 5.47662 5.64247 5.69550 5.76027 5.79323 5.91017 5.95731 5.98932 6.22804 6.34827 6.42944 6.55720 6.74824 6.81877 6.85838 7.02264 7.15235 7.23233 7.49637 7.65977 7.77730 7.88781 7.96884 8.60346 8.75047 9.32431 10.79480 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009138 B = 0.003321 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.388534 B = 8429.955857 C =10527.881455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.234 3.766 10 N -0.556 5.556 11 C 0.526 3.474 12 O -0.538 6.538 13 C 0.058 3.942 14 O -0.332 6.332 15 C 0.464 3.536 16 O -0.477 6.477 17 C 0.105 3.895 18 H 0.112 0.888 19 C -0.152 4.152 20 C -0.080 4.080 21 C -0.283 4.283 22 C 0.058 3.942 23 O -0.301 6.301 24 C 0.174 3.826 25 C -0.105 4.105 26 C -0.113 4.113 27 C -0.133 4.133 28 C -0.114 4.114 29 C -0.122 4.122 30 H 0.267 0.733 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.164 0.836 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 -10.814 7.581 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.116 3.884 10 N -0.285 5.285 11 C 0.313 3.687 12 O -0.415 6.415 13 C -0.018 4.018 14 O -0.248 6.248 15 C 0.304 3.696 16 O -0.362 6.362 17 C 0.047 3.953 18 H 0.130 0.870 19 C -0.189 4.189 20 C -0.117 4.117 21 C -0.302 4.302 22 C -0.004 4.004 23 O -0.214 6.214 24 C 0.084 3.916 25 C -0.125 4.125 26 C -0.132 4.132 27 C -0.151 4.151 28 C -0.132 4.132 29 C -0.142 4.142 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.142 0.858 40 H 0.181 0.819 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.895 -10.738 7.596 14.850 hybrid contribution 0.334 1.206 0.004 1.251 sum 7.229 -9.532 7.599 14.173 Atomic orbital electron populations 1.69914 1.06040 1.27550 1.48877 1.24923 0.94882 0.99399 0.94280 0.86431 0.80122 0.83049 0.77904 1.19571 1.20682 1.20602 1.21433 0.93699 0.90126 1.53177 0.91789 1.19697 0.87183 0.82153 0.99389 1.45797 1.45619 1.34934 1.02132 1.19844 0.80553 0.83556 0.84716 1.90678 1.37406 1.26028 1.87421 1.22876 0.99880 0.96932 0.82106 1.86393 1.68410 1.55931 1.14092 1.22845 0.79295 0.83152 0.84314 1.90757 1.34090 1.25140 1.86230 1.21632 0.94834 0.97075 0.81719 0.87027 1.22260 0.92281 1.03167 1.01242 1.20367 0.99601 1.00186 0.91502 1.22573 0.96896 1.10371 1.00377 1.22101 0.93433 0.97042 0.87852 1.85962 1.56069 1.66627 1.12772 1.17515 0.92638 0.94662 0.86812 1.21241 0.95437 0.99228 0.96582 1.20947 0.99463 0.98444 0.94359 1.21035 0.93834 1.00586 0.99695 1.20909 0.95842 1.00260 0.96221 1.21207 0.99926 0.97807 0.95218 0.92313 0.93708 0.93983 0.87791 0.86287 0.88173 0.89831 0.89912 0.90546 0.85798 0.81883 0.86203 0.86214 0.86434 0.86136 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 13.29 55.43 0.74 -23.44 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.55 -13.93 9.16 -34.44 -0.32 -14.24 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.23 5.43 4.88 -5.19 -0.03 5.41 16 10 N -0.56 -11.70 2.50 -114.74 -0.29 -11.99 16 11 C 0.53 10.91 7.61 -10.99 -0.08 10.82 16 12 O -0.54 -12.02 16.27 -14.11 -0.23 -12.25 16 13 C 0.06 1.11 4.61 36.01 0.17 1.28 16 14 O -0.33 -5.83 9.75 -45.90 -0.45 -6.28 16 15 C 0.46 7.67 7.31 36.01 0.26 7.93 16 16 O -0.48 -9.47 16.27 -25.43 -0.41 -9.88 16 17 C 0.10 1.33 3.38 -27.62 -0.09 1.24 16 18 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.15 -1.63 5.53 -26.33 -0.15 -1.77 16 20 C -0.08 -0.67 6.23 -27.87 -0.17 -0.85 16 21 C -0.28 -2.42 9.97 -36.07 -0.36 -2.78 16 22 C 0.06 0.57 10.88 29.10 0.32 0.89 16 23 O -0.30 -4.02 9.60 -36.88 -0.35 -4.38 16 24 C 0.17 3.46 4.74 -83.69 -0.40 3.06 16 25 C -0.11 -1.95 9.56 -39.39 -0.38 -2.33 16 26 C -0.11 -1.74 10.04 -39.61 -0.40 -2.13 16 27 C -0.13 -1.87 10.04 -39.55 -0.40 -2.26 16 28 C -0.11 -1.67 10.04 -39.62 -0.40 -2.07 16 29 C -0.12 -2.13 9.69 -39.39 -0.38 -2.51 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.04 1.10 7.86 -51.93 -0.41 0.69 16 32 H 0.04 0.99 6.47 -51.93 -0.34 0.65 16 33 H 0.10 1.92 7.25 -51.92 -0.38 1.54 16 34 H 0.12 2.38 7.91 -51.93 -0.41 1.97 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 44 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 45 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -31.64 390.38 -9.18 -40.82 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.15 Total: 4.60 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.90 Total: 1.39 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.45 Total: -35.43 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.44 Total: -32.80 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.64 -9.18 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787040940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.660 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds