Wall clock time and date at job start Wed Apr 1 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00033 * 2 1 4 4 H 1.48496 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46845 * 300.00120 * 3 2 1 6 6 H 1.48497 * 109.47311 * 59.99983 * 3 2 1 7 7 C 1.37878 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00252 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99857 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46882 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00563 * 89.99927 * 10 9 7 12 12 O 1.21281 * 120.00810 * 175.26223 * 11 10 9 13 13 C 1.50702 * 119.99699 * 355.26797 * 11 10 9 14 14 O 1.45197 * 109.47230 * 179.97438 * 13 11 10 15 15 C 1.34230 * 117.00103 * 179.97438 * 14 13 11 16 16 O 1.20827 * 119.99759 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00311 * 180.27644 * 15 14 13 18 18 H 1.08999 * 109.70168 * 304.72399 * 17 15 14 19 19 C 1.53506 * 109.70453 * 65.30567 * 17 15 14 20 20 C 1.53264 * 108.14465 * 182.06051 * 19 17 15 21 21 C 1.50438 * 109.46957 * 313.23058 * 20 19 17 22 22 C 1.30683 * 122.49718 * 17.45397 * 21 20 19 23 23 O 1.35135 * 123.34634 * 359.58482 * 22 21 20 24 24 C 1.39931 * 119.99873 * 269.99579 * 10 9 7 25 25 C 1.38871 * 120.06684 * 111.85271 * 24 10 9 26 26 C 1.38119 * 119.92738 * 179.79230 * 25 24 10 27 27 C 1.38284 * 120.06512 * 0.48511 * 26 25 24 28 28 C 1.38273 * 120.14562 * 359.74361 * 27 26 25 29 29 C 1.38110 * 120.07192 * 0.02639 * 28 27 26 30 30 H 0.96999 * 119.99861 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47283 * 60.00138 * 9 7 2 32 32 H 1.08999 * 109.47129 * 299.99666 * 9 7 2 33 33 H 1.09008 * 109.47178 * 59.99585 * 13 11 10 34 34 H 1.08999 * 109.46855 * 300.00074 * 13 11 10 35 35 H 1.08992 * 109.72688 * 301.75232 * 19 17 15 36 36 H 1.09003 * 109.72479 * 62.42987 * 19 17 15 37 37 H 1.08993 * 109.48731 * 193.21622 * 20 19 17 38 38 H 1.09001 * 109.44172 * 73.21989 * 20 19 17 39 39 H 1.08010 * 118.75418 * 197.46845 * 21 20 19 40 40 H 1.08001 * 118.33150 * 179.56732 * 22 21 20 41 41 H 1.07997 * 120.03646 * 0.02562 * 25 24 10 42 42 H 1.07992 * 119.96584 * 180.22796 * 26 25 24 43 43 H 1.08003 * 119.92511 * 179.72480 * 27 26 25 44 44 H 1.08008 * 119.96342 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.03564 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6410 -4.1249 1.1666 12 8 3.3612 -5.1007 1.1684 13 6 2.2357 -3.4852 2.4695 14 8 2.8313 -4.2163 3.5735 15 6 2.5671 -3.7715 4.8121 16 8 1.8612 -2.8034 4.9685 17 6 3.1555 -4.4759 6.0074 18 1 2.8875 -5.5321 5.9801 19 6 4.6834 -4.3290 5.9944 20 6 5.2473 -5.1000 7.1929 21 6 4.4545 -4.7604 8.4255 22 6 3.2719 -4.2071 8.3694 23 8 2.6578 -3.8829 7.2101 24 6 2.6576 -4.1445 -1.2124 25 6 3.9832 -3.9785 -1.5914 26 6 4.4299 -4.5083 -2.7861 27 6 3.5561 -5.1948 -3.6092 28 6 2.2344 -5.3577 -3.2370 29 6 1.7827 -4.8344 -2.0413 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 1.1499 -3.5075 2.5630 34 1 2.5809 -2.4515 2.4895 35 1 5.0848 -4.7418 5.0689 36 1 4.9525 -3.2758 6.0754 37 1 6.2908 -4.8241 7.3445 38 1 5.1788 -6.1707 7.0003 39 1 4.8789 -4.9820 9.3937 40 1 2.7591 -3.9985 9.2967 41 1 4.6651 -3.4390 -0.9508 42 1 5.4615 -4.3828 -3.0797 43 1 3.9067 -5.6043 -4.5451 44 1 1.5546 -5.8947 -3.8819 45 1 0.7503 -4.9623 -1.7509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787040940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:09 Heat of formation + Delta-G solvation = -118.723745 kcal Electronic energy + Delta-G solvation = -29865.197254 eV Core-core repulsion = 25620.387859 eV Total energy + Delta-G solvation = -4244.809395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23816 -41.49782 -40.63311 -39.36008 -37.66905 -36.85345 -35.03214 -34.68290 -33.07309 -31.83863 -31.67004 -29.79641 -28.88217 -27.37994 -25.15673 -24.83670 -23.86986 -23.36348 -22.57837 -20.71726 -20.06414 -19.40145 -18.83353 -18.41298 -18.20208 -18.01348 -17.61682 -17.21876 -16.99956 -16.58522 -16.49225 -16.22720 -15.61649 -15.50413 -15.11173 -14.96543 -14.57813 -14.47246 -14.30836 -14.18374 -13.97000 -13.86944 -13.69378 -13.65423 -13.40982 -13.03446 -12.73854 -12.64622 -12.54191 -12.21173 -12.14059 -12.07706 -11.96069 -11.76395 -11.75669 -11.42624 -11.07619 -10.67630 -10.22702 -9.83990 -9.43185 -9.33290 -8.29548 -6.44615 0.34352 0.49936 0.77380 0.83510 1.34207 1.34649 1.35852 1.40234 1.49292 2.01410 2.34537 2.61514 2.85965 3.02273 3.28140 3.40774 3.41217 3.74934 3.88362 3.97184 4.03514 4.07771 4.09807 4.11891 4.27769 4.34295 4.47166 4.58764 4.64636 4.65748 4.70626 4.87494 4.92766 5.00739 5.05220 5.06715 5.12283 5.26747 5.43905 5.52253 5.58230 5.59156 5.63856 5.71075 5.91404 6.10384 6.25044 6.35903 6.50479 6.64857 7.01613 7.27703 8.76852 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009138 B = 0.003321 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.388534 B = 8429.955857 C =10527.881455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.250 3.750 10 N -0.553 5.553 11 C 0.525 3.475 12 O -0.555 6.555 13 C 0.065 3.935 14 O -0.332 6.332 15 C 0.464 3.536 16 O -0.517 6.517 17 C 0.108 3.892 18 H 0.137 0.863 19 C -0.150 4.150 20 C -0.080 4.080 21 C -0.269 4.269 22 C 0.030 3.970 23 O -0.330 6.330 24 C 0.130 3.870 25 C -0.131 4.131 26 C -0.112 4.112 27 C -0.121 4.121 28 C -0.108 4.108 29 C -0.140 4.140 30 H 0.270 0.730 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.187 0.813 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.162 0.838 44 H 0.157 0.843 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 -12.139 7.057 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.130 3.870 10 N -0.281 5.281 11 C 0.314 3.686 12 O -0.434 6.434 13 C -0.012 4.012 14 O -0.247 6.247 15 C 0.306 3.694 16 O -0.404 6.404 17 C 0.051 3.949 18 H 0.154 0.846 19 C -0.188 4.188 20 C -0.117 4.117 21 C -0.288 4.288 22 C -0.031 4.031 23 O -0.245 6.245 24 C 0.040 3.960 25 C -0.150 4.150 26 C -0.130 4.130 27 C -0.139 4.139 28 C -0.126 4.126 29 C -0.159 4.159 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.167 0.833 40 H 0.204 0.796 41 H 0.122 0.878 42 H 0.168 0.832 43 H 0.179 0.821 44 H 0.174 0.826 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.622 -12.083 7.069 16.441 hybrid contribution -0.143 1.531 0.125 1.543 sum 8.479 -10.551 7.193 15.329 Atomic orbital electron populations 1.69996 1.07188 1.28387 1.49825 1.25629 0.95605 1.02321 0.94025 0.85541 0.78981 0.79455 0.78013 1.19333 1.19919 1.20415 1.21608 0.93392 0.91267 1.52722 0.92641 1.19324 0.87150 0.82369 0.98110 1.45676 1.45070 1.34280 1.03119 1.20013 0.80230 0.83317 0.85067 1.90642 1.38291 1.26818 1.87667 1.22649 0.99951 0.96206 0.82346 1.86422 1.68283 1.55648 1.14366 1.23823 0.78290 0.82659 0.84638 1.90730 1.36048 1.27082 1.86535 1.21771 0.95675 0.97279 0.80152 0.84619 1.22282 0.90791 1.02942 1.02735 1.20468 1.00266 1.00731 0.90199 1.22882 0.96062 1.08354 1.01487 1.22592 0.94540 0.98690 0.87271 1.85928 1.57241 1.67653 1.13648 1.17926 0.93972 0.97029 0.87025 1.21319 0.94840 1.00689 0.98191 1.21337 1.01294 0.97375 0.92986 1.21557 0.93077 0.98686 1.00599 1.21365 0.97007 0.99061 0.95162 1.21398 0.99763 0.98434 0.96336 0.92098 0.95177 0.94802 0.87644 0.87653 0.88048 0.91106 0.88217 0.88921 0.83256 0.79594 0.87821 0.83207 0.82087 0.82557 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 13.29 21.45 0.28 -50.76 16 2 C 0.03 1.36 5.46 84.65 0.46 1.82 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.55 -29.13 9.16 25.60 0.23 -28.90 16 8 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.25 12.19 4.88 85.63 0.42 12.60 16 10 N -0.55 -24.43 2.50 -635.31 -1.59 -26.03 16 11 C 0.53 22.89 7.61 87.66 0.67 23.55 16 12 O -0.56 -25.65 16.27 15.77 0.26 -25.40 16 13 C 0.07 2.64 4.61 71.24 0.33 2.96 16 14 O -0.33 -12.14 9.75 -45.06 -0.44 -12.57 16 15 C 0.46 15.94 7.31 71.24 0.52 16.46 16 16 O -0.52 -21.60 16.27 28.34 0.46 -21.14 16 17 C 0.11 2.74 3.38 30.02 0.10 2.85 16 18 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 19 C -0.15 -3.11 5.53 30.85 0.17 -2.94 16 20 C -0.08 -1.16 6.23 29.85 0.19 -0.97 16 21 C -0.27 -3.92 9.97 25.89 0.26 -3.66 16 22 C 0.03 0.55 10.88 68.11 0.74 1.29 16 23 O -0.33 -8.83 9.60 -65.22 -0.63 -9.45 16 24 C 0.13 5.31 4.74 38.15 0.18 5.49 16 25 C -0.13 -4.90 9.56 22.39 0.21 -4.69 16 26 C -0.11 -3.18 10.04 22.25 0.22 -2.96 16 27 C -0.12 -2.96 10.04 22.29 0.22 -2.73 16 28 C -0.11 -2.88 10.04 22.25 0.22 -2.66 16 29 C -0.14 -4.88 9.69 22.39 0.22 -4.66 16 30 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.03 1.55 7.86 -2.39 -0.02 1.53 16 32 H 0.03 1.69 6.47 -2.39 -0.02 1.68 16 33 H 0.11 4.19 7.25 -2.38 -0.02 4.17 16 34 H 0.11 4.54 7.91 -2.39 -0.02 4.52 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 45 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -70.90 390.38 6.74 -64.16 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 1.00 Total: 23.62 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.37 Total: 12.86 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.31 Total: -76.79 kcal Atomic # 8 Polarization: -68.22 SS G_CDS: -0.35 Total: -68.56 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -70.90 6.74 -64.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787040940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.562 kcal (2) G-P(sol) polarization free energy of solvation -70.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds