Wall clock time and date at job start Wed Apr 1 2020 03:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 119.76883 * 2 1 4 4 C 1.38607 * 120.45816 * 179.97438 * 3 2 1 5 5 C 1.38575 * 119.72023 * 0.02562 * 4 3 2 6 6 C 1.40942 * 119.82230 * 359.97438 * 5 4 3 7 7 C 1.38568 * 119.81812 * 0.02562 * 6 5 4 8 8 C 1.47816 * 105.87888 * 179.97438 * 6 5 4 9 9 O 1.21447 * 125.70979 * 179.97438 * 8 6 5 10 10 N 1.34521 * 108.58124 * 359.97438 * 8 6 5 11 11 C 1.46501 * 124.46393 * 179.97438 * 10 8 6 12 12 H 1.09003 * 109.46699 * 0.02562 * 11 10 8 13 13 C 1.52990 * 109.47115 * 120.00002 * 11 10 8 14 14 C 1.50701 * 109.47069 * 240.00305 * 11 10 8 15 15 O 1.20825 * 120.00145 * 359.97438 * 14 11 10 16 16 O 1.34231 * 119.99504 * 179.97438 * 14 11 10 17 17 C 1.45203 * 116.99408 * 179.97438 * 16 14 11 18 18 C 1.53008 * 109.46693 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.46751 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46831 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00022 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99924 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99931 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00145 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47097 * 89.99507 * 24 22 20 26 26 H 1.48502 * 109.47320 * 209.99639 * 24 22 20 27 27 H 1.48498 * 109.46851 * 329.99398 * 24 22 20 28 28 C 1.34528 * 111.08026 * 359.75449 * 10 8 6 29 29 O 1.21441 * 125.71356 * 180.27734 * 28 10 8 30 30 H 1.08994 * 109.47134 * 90.00346 * 1 2 3 31 31 H 1.09010 * 109.47290 * 210.00305 * 1 2 3 32 32 H 1.09000 * 109.47606 * 329.99728 * 1 2 3 33 33 H 1.07993 * 119.77142 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.14163 * 179.97438 * 4 3 2 35 35 H 1.07998 * 120.13740 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47369 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.47642 * 300.00234 * 13 11 10 38 38 H 1.09003 * 109.47210 * 60.00469 * 13 11 10 39 39 H 1.09000 * 109.47235 * 300.00004 * 17 16 14 40 40 H 1.08998 * 109.47103 * 60.00680 * 17 16 14 41 41 H 1.09000 * 109.47121 * 299.99875 * 18 17 16 42 42 H 1.08998 * 109.46953 * 60.00390 * 18 17 16 43 43 H 1.09000 * 109.47024 * 299.99711 * 19 18 17 44 44 H 1.08998 * 109.47256 * 60.00352 * 19 18 17 45 45 H 0.97005 * 119.99693 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1933 1.1999 0.0000 4 6 3.5792 1.2166 0.0005 5 6 4.2807 0.0215 0.0005 6 6 3.5809 -1.2019 0.0005 7 6 2.1952 -1.2032 0.0000 8 6 4.6143 -2.2589 -0.0001 9 8 4.4047 -3.4551 0.0002 10 7 5.8257 -1.6740 -0.0010 11 6 7.0974 -2.4013 -0.0013 12 1 6.9026 -3.4738 -0.0011 13 6 7.8975 -2.0290 -1.2511 14 6 7.8867 -2.0334 1.2286 15 8 7.4337 -1.2443 2.0236 16 8 9.0931 -2.5825 1.4409 17 6 9.7969 -2.1815 2.6459 18 6 11.1432 -2.9053 2.7149 19 6 11.8846 -2.4832 3.9850 20 6 13.2103 -3.1966 4.0533 21 1 13.4956 -3.8821 3.2690 22 6 14.0593 -2.9734 5.1165 23 7 15.2164 -3.5956 5.1758 24 14 13.5660 -1.7872 6.4726 25 1 12.8336 -2.5248 7.5332 26 1 14.7831 -1.1648 7.0528 27 1 12.6892 -0.7290 5.9099 28 6 5.7156 -0.3333 -0.0064 29 8 6.6404 0.4539 -0.0133 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6458 2.1308 -0.0004 34 1 4.1103 2.1570 0.0001 35 1 1.6538 -2.1376 0.0004 36 1 8.8435 -2.5705 -1.2516 37 1 7.3266 -2.2951 -2.1407 38 1 8.0923 -0.9565 -1.2517 39 1 9.9643 -1.1045 2.6276 40 1 9.1991 -2.4415 3.5194 41 1 10.9762 -3.9823 2.7330 42 1 11.7409 -2.6449 1.8414 43 1 12.0516 -1.4063 3.9673 44 1 11.2867 -2.7440 4.8583 45 1 15.8136 -3.4388 5.9240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791407449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:53 Heat of formation + Delta-G solvation = -111.325414 kcal Electronic energy + Delta-G solvation = -29235.921073 eV Core-core repulsion = 24991.432493 eV Total energy + Delta-G solvation = -4244.488579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.86150 -40.45396 -39.19476 -38.95131 -36.77186 -36.16874 -34.52974 -34.06002 -32.42715 -31.84377 -31.13818 -28.02245 -27.68063 -25.62821 -25.12544 -24.02275 -22.78231 -22.07181 -21.23400 -20.36166 -19.85937 -18.28416 -17.84469 -17.47141 -17.00125 -16.68389 -16.50239 -16.40406 -15.84495 -15.66484 -15.24566 -14.62469 -14.51081 -14.45413 -14.34819 -14.31149 -14.20553 -13.50031 -13.20734 -12.93723 -12.78863 -12.74592 -12.70594 -12.58947 -12.40111 -12.24414 -12.01775 -11.89059 -11.08330 -10.99839 -10.91999 -10.84129 -10.58565 -10.49259 -10.29569 -9.98302 -9.81580 -9.75961 -9.72004 -9.47050 -9.25702 -8.57113 -6.07428 -4.06508 -0.39109 0.43502 1.56884 1.64721 2.08173 2.41591 2.82773 3.05392 3.18897 3.29771 3.37378 3.41132 3.86199 4.07113 4.15673 4.36202 4.42741 4.46197 4.47812 4.50345 4.57476 4.76413 4.84438 4.97272 4.99337 5.23356 5.25066 5.25782 5.35901 5.38924 5.42094 5.44231 5.45249 5.53156 5.72775 5.74731 5.82818 6.05619 6.24084 6.25535 6.36820 6.59532 6.76797 6.82824 7.19494 7.26041 7.31196 7.66238 7.74711 8.49051 8.96686 9.54056 11.05638 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.001995 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.112573 B =14028.323926 C =14478.138755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.097 4.097 4 C -0.040 4.040 5 C -0.138 4.138 6 C -0.133 4.133 7 C -0.045 4.045 8 C 0.580 3.420 9 O -0.462 6.462 10 N -0.566 5.566 11 C 0.150 3.850 12 H 0.146 0.854 13 C -0.163 4.163 14 C 0.452 3.548 15 O -0.495 6.495 16 O -0.347 6.347 17 C 0.067 3.933 18 C -0.101 4.101 19 C -0.011 4.011 20 C -0.522 4.522 21 H 0.074 0.926 22 C 0.068 3.932 23 N -0.901 5.901 24 Si 0.879 3.121 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.265 1.265 28 C 0.579 3.421 29 O -0.444 6.444 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.761 8.465 -16.042 37.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C -0.115 4.115 4 C -0.058 4.058 5 C -0.142 4.142 6 C -0.137 4.137 7 C -0.064 4.064 8 C 0.370 3.630 9 O -0.333 6.333 10 N -0.310 5.310 11 C 0.047 3.953 12 H 0.164 0.836 13 C -0.220 4.220 14 C 0.292 3.708 15 O -0.382 6.382 16 O -0.263 6.263 17 C -0.006 4.006 18 C -0.139 4.139 19 C -0.048 4.048 20 C -0.560 4.560 21 H 0.093 0.907 22 C -0.134 4.134 23 N -0.539 5.539 24 Si 0.706 3.294 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.190 1.190 28 C 0.368 3.632 29 O -0.313 6.313 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -32.198 8.423 -15.654 36.779 hybrid contribution 0.009 0.608 1.097 1.254 sum -32.190 9.031 -14.557 36.464 Atomic orbital electron populations 1.20899 0.89632 1.03833 1.03228 1.20202 0.97017 0.92335 0.96900 1.21350 0.93347 0.98430 0.98403 1.20799 0.93580 0.96938 0.94531 1.20511 0.93229 0.95017 1.05408 1.20437 0.94530 0.93486 1.05212 1.20655 0.90923 0.98907 0.95879 1.18335 0.82483 0.87861 0.74351 1.90825 1.83735 1.14646 1.44049 1.46348 1.07478 1.08841 1.68316 1.20749 0.81460 0.99434 0.93635 0.83636 1.22162 1.01073 1.04684 0.94127 1.23338 0.81488 0.78924 0.87015 1.90692 1.69605 1.32075 1.45862 1.86465 1.29383 1.64510 1.45923 1.23587 0.93668 1.00418 0.82946 1.21576 0.90932 1.00096 1.01254 1.19525 0.96076 0.97121 0.92094 1.21044 0.99969 1.26247 1.08714 0.90749 1.25011 0.94742 0.95675 0.97954 1.69910 1.09595 1.42820 1.31618 0.86790 0.78203 0.81982 0.82411 1.20206 1.21244 1.18994 1.18262 0.89037 0.81273 0.74603 1.90814 1.45056 1.53198 1.42223 0.90190 0.90682 0.90655 0.83994 0.83838 0.83945 0.88291 0.90345 0.90229 0.91280 0.91425 0.91417 0.91352 0.96240 0.96715 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.26 10.00 36.00 0.36 0.10 16 2 C -0.06 -0.31 5.89 -104.49 -0.62 -0.93 16 3 C -0.10 -0.46 9.68 -39.45 -0.38 -0.84 16 4 C -0.04 -0.28 10.09 -39.32 -0.40 -0.68 16 5 C -0.14 -1.37 6.41 -104.83 -0.67 -2.04 16 6 C -0.13 -1.25 6.41 -104.83 -0.67 -1.93 16 7 C -0.04 -0.30 9.74 -39.32 -0.38 -0.68 16 8 C 0.58 6.72 8.02 -12.46 -0.10 6.62 16 9 O -0.46 -6.06 17.43 5.41 0.09 -5.97 16 10 N -0.57 -6.94 2.31 -111.75 -0.26 -7.20 16 11 C 0.15 1.79 3.30 -69.09 -0.23 1.56 16 12 H 0.15 1.47 7.58 -51.93 -0.39 1.07 16 13 C -0.16 -1.57 9.13 37.15 0.34 -1.23 16 14 C 0.45 7.08 6.98 36.01 0.25 7.33 16 15 O -0.50 -9.17 14.68 -23.88 -0.35 -9.52 16 16 O -0.35 -5.65 10.12 -39.26 -0.40 -6.05 16 17 C 0.07 1.19 5.47 37.16 0.20 1.40 16 18 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 19 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 20 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 21 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 22 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 23 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 24 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 28 C 0.58 7.42 6.68 -12.45 -0.08 7.34 16 29 O -0.44 -6.81 15.57 -8.31 -0.13 -6.94 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.13 8.08 -51.92 -0.42 -0.29 16 32 H 0.07 0.09 8.08 -51.93 -0.42 -0.33 16 33 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.89 6.82 -51.93 -0.35 0.53 16 39 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 40 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 44 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -35.83 387.55 -8.33 -44.16 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -6.17 Total: -4.60 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.07 Total: 0.11 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.52 Total: -34.28 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.78 Total: -28.48 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.83 -8.33 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791407449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.162 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds