Wall clock time and date at job start Wed Apr 1 2020 03:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 119.76883 * 2 1 4 4 C 1.38607 * 120.45816 * 179.97438 * 3 2 1 5 5 C 1.38575 * 119.72023 * 0.02562 * 4 3 2 6 6 C 1.40942 * 119.82230 * 359.97438 * 5 4 3 7 7 C 1.38568 * 119.81812 * 0.02562 * 6 5 4 8 8 C 1.47816 * 105.87888 * 179.97438 * 6 5 4 9 9 O 1.21447 * 125.70979 * 179.97438 * 8 6 5 10 10 N 1.34521 * 108.58124 * 359.97438 * 8 6 5 11 11 C 1.46501 * 124.46393 * 179.97438 * 10 8 6 12 12 H 1.09003 * 109.46699 * 0.02562 * 11 10 8 13 13 C 1.52990 * 109.47115 * 120.00002 * 11 10 8 14 14 C 1.50701 * 109.47069 * 240.00305 * 11 10 8 15 15 O 1.20825 * 120.00145 * 359.97438 * 14 11 10 16 16 O 1.34231 * 119.99504 * 179.97438 * 14 11 10 17 17 C 1.45203 * 116.99408 * 179.97438 * 16 14 11 18 18 C 1.53008 * 109.46693 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.46751 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46831 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00022 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99924 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99931 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00145 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47097 * 89.99507 * 24 22 20 26 26 H 1.48502 * 109.47320 * 209.99639 * 24 22 20 27 27 H 1.48498 * 109.46851 * 329.99398 * 24 22 20 28 28 C 1.34528 * 111.08026 * 359.75449 * 10 8 6 29 29 O 1.21441 * 125.71356 * 180.27734 * 28 10 8 30 30 H 1.08994 * 109.47134 * 90.00346 * 1 2 3 31 31 H 1.09010 * 109.47290 * 210.00305 * 1 2 3 32 32 H 1.09000 * 109.47606 * 329.99728 * 1 2 3 33 33 H 1.07993 * 119.77142 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.14163 * 179.97438 * 4 3 2 35 35 H 1.07998 * 120.13740 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47369 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.47642 * 300.00234 * 13 11 10 38 38 H 1.09003 * 109.47210 * 60.00469 * 13 11 10 39 39 H 1.09000 * 109.47235 * 300.00004 * 17 16 14 40 40 H 1.08998 * 109.47103 * 60.00680 * 17 16 14 41 41 H 1.09000 * 109.47121 * 299.99875 * 18 17 16 42 42 H 1.08998 * 109.46953 * 60.00390 * 18 17 16 43 43 H 1.09000 * 109.47024 * 299.99711 * 19 18 17 44 44 H 1.08998 * 109.47256 * 60.00352 * 19 18 17 45 45 H 0.97005 * 119.99693 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1933 1.1999 0.0000 4 6 3.5792 1.2166 0.0005 5 6 4.2807 0.0215 0.0005 6 6 3.5809 -1.2019 0.0005 7 6 2.1952 -1.2032 0.0000 8 6 4.6143 -2.2589 -0.0001 9 8 4.4047 -3.4551 0.0002 10 7 5.8257 -1.6740 -0.0010 11 6 7.0974 -2.4013 -0.0013 12 1 6.9026 -3.4738 -0.0011 13 6 7.8975 -2.0290 -1.2511 14 6 7.8867 -2.0334 1.2286 15 8 7.4337 -1.2443 2.0236 16 8 9.0931 -2.5825 1.4409 17 6 9.7969 -2.1815 2.6459 18 6 11.1432 -2.9053 2.7149 19 6 11.8846 -2.4832 3.9850 20 6 13.2103 -3.1966 4.0533 21 1 13.4956 -3.8821 3.2690 22 6 14.0593 -2.9734 5.1165 23 7 15.2164 -3.5956 5.1758 24 14 13.5660 -1.7872 6.4726 25 1 12.8336 -2.5248 7.5332 26 1 14.7831 -1.1648 7.0528 27 1 12.6892 -0.7290 5.9099 28 6 5.7156 -0.3333 -0.0064 29 8 6.6404 0.4539 -0.0133 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6458 2.1308 -0.0004 34 1 4.1103 2.1570 0.0001 35 1 1.6538 -2.1376 0.0004 36 1 8.8435 -2.5705 -1.2516 37 1 7.3266 -2.2951 -2.1407 38 1 8.0923 -0.9565 -1.2517 39 1 9.9643 -1.1045 2.6276 40 1 9.1991 -2.4415 3.5194 41 1 10.9762 -3.9823 2.7330 42 1 11.7409 -2.6449 1.8414 43 1 12.0516 -1.4063 3.9673 44 1 11.2867 -2.7440 4.8583 45 1 15.8136 -3.4388 5.9240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791407449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:52 Heat of formation + Delta-G solvation = -132.042840 kcal Electronic energy + Delta-G solvation = -29236.819448 eV Core-core repulsion = 24991.432493 eV Total energy + Delta-G solvation = -4245.386954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.71004 -41.67511 -39.90876 -39.82630 -38.08492 -37.18518 -36.02369 -35.20051 -33.90912 -32.92231 -31.80791 -29.54316 -28.45014 -26.53720 -25.99617 -25.17039 -24.10243 -22.68194 -22.29358 -22.07405 -20.83266 -19.22859 -19.06544 -18.77167 -18.41187 -17.84657 -17.82633 -17.21042 -16.80539 -16.42701 -16.30374 -16.03419 -15.85983 -15.28861 -15.16739 -15.09847 -14.87523 -14.76799 -14.66746 -14.34503 -13.86079 -13.79724 -13.55115 -13.28000 -13.23981 -13.01039 -12.97039 -12.90285 -12.68104 -12.53176 -12.22411 -12.11484 -11.85593 -11.80015 -11.64320 -11.49976 -11.47615 -11.40886 -11.15127 -10.80152 -10.28577 -9.95838 -8.32729 -6.37701 -1.09252 -0.08919 0.71537 0.84046 0.88896 1.33959 1.35565 1.39624 1.47287 1.82607 2.32906 2.46373 2.53378 3.02160 3.10030 3.24063 3.52916 3.54049 3.64192 3.82266 3.90343 3.91751 3.93339 4.06314 4.11839 4.28736 4.31587 4.47561 4.60582 4.64499 4.67615 4.68669 4.81093 4.87464 4.90687 4.90950 4.97195 5.04965 5.15578 5.26257 5.33977 5.39846 5.40655 5.43866 5.58592 5.67249 5.96164 6.22496 6.30388 6.45164 6.69694 7.26691 8.83634 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.001995 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.112573 B =14028.323926 C =14478.138755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.053 4.053 3 C -0.085 4.085 4 C -0.040 4.040 5 C -0.165 4.165 6 C -0.150 4.150 7 C -0.043 4.043 8 C 0.580 3.420 9 O -0.484 6.484 10 N -0.572 5.572 11 C 0.149 3.851 12 H 0.165 0.835 13 C -0.155 4.155 14 C 0.451 3.549 15 O -0.526 6.526 16 O -0.345 6.345 17 C 0.075 3.925 18 C -0.091 4.091 19 C -0.010 4.010 20 C -0.534 4.534 21 H 0.038 0.962 22 C 0.007 3.993 23 N -0.947 5.947 24 Si 0.948 3.052 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.249 1.249 28 C 0.574 3.426 29 O -0.483 6.483 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.179 0.821 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.024 0.976 44 H 0.024 0.976 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.567 10.094 -16.195 41.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.053 4.053 3 C -0.103 4.103 4 C -0.058 4.058 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.062 4.062 8 C 0.371 3.629 9 O -0.357 6.357 10 N -0.315 5.315 11 C 0.046 3.954 12 H 0.182 0.818 13 C -0.213 4.213 14 C 0.293 3.707 15 O -0.415 6.415 16 O -0.260 6.260 17 C 0.002 3.998 18 C -0.129 4.129 19 C -0.047 4.047 20 C -0.572 4.572 21 H 0.056 0.944 22 C -0.191 4.191 23 N -0.587 5.587 24 Si 0.771 3.229 25 H -0.190 1.190 26 H -0.207 1.207 27 H -0.173 1.173 28 C 0.365 3.635 29 O -0.355 6.355 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.197 0.803 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -36.033 10.041 -15.832 40.618 hybrid contribution 1.090 0.076 1.062 1.524 sum -34.943 10.117 -14.770 39.262 Atomic orbital electron populations 1.21007 0.87150 1.04978 1.04402 1.20607 0.98620 0.91528 0.94585 1.21785 0.92289 1.00014 0.96204 1.21108 0.94747 0.96325 0.93647 1.20457 0.91422 0.96451 1.08512 1.20377 0.95276 0.92142 1.07578 1.20987 0.89796 1.00571 0.94844 1.18714 0.82768 0.88022 0.73398 1.90799 1.84019 1.15539 1.45373 1.46494 1.07755 1.09013 1.68219 1.20979 0.81488 1.00453 0.92488 0.81785 1.22159 1.01603 1.03610 0.93880 1.24122 0.80945 0.78012 0.87644 1.90673 1.70152 1.33482 1.47197 1.86453 1.29935 1.64525 1.45098 1.23274 0.92809 0.99884 0.83861 1.21333 0.91846 1.00262 0.99412 1.19452 0.94236 0.96699 0.94330 1.21378 1.02170 1.25900 1.07763 0.94398 1.25977 0.94591 0.97669 1.00826 1.70055 1.11035 1.44785 1.32867 0.85689 0.78301 0.79835 0.79040 1.19039 1.20711 1.17276 1.18808 0.90141 0.81119 0.73384 1.90776 1.46414 1.53930 1.44387 0.88791 0.90113 0.89039 0.80337 0.82886 0.82455 0.87303 0.87936 0.91975 0.91401 0.91065 0.91412 0.91477 0.95785 0.95807 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.00 10.00 71.23 0.71 0.71 16 2 C -0.05 -0.33 5.89 -19.78 -0.12 -0.45 16 3 C -0.09 -0.51 9.68 22.36 0.22 -0.29 16 4 C -0.04 -0.49 10.09 22.44 0.23 -0.26 16 5 C -0.16 -3.22 6.41 -20.00 -0.13 -3.35 16 6 C -0.15 -2.74 6.41 -20.00 -0.13 -2.87 16 7 C -0.04 -0.49 9.74 22.44 0.22 -0.27 16 8 C 0.58 13.53 8.02 86.82 0.70 14.22 16 9 O -0.48 -12.75 17.43 -3.55 -0.06 -12.81 16 10 N -0.57 -14.29 2.31 -744.39 -1.72 -16.01 16 11 C 0.15 3.55 3.30 44.24 0.15 3.70 16 12 H 0.16 3.25 7.58 -2.39 -0.02 3.23 16 13 C -0.16 -2.94 9.13 71.98 0.66 -2.29 16 14 C 0.45 14.26 6.98 71.24 0.50 14.76 16 15 O -0.53 -19.88 14.68 26.87 0.39 -19.49 16 16 O -0.34 -11.17 10.12 -51.43 -0.52 -11.69 16 17 C 0.08 2.66 5.47 71.98 0.39 3.05 16 18 C -0.09 -3.63 5.53 30.60 0.17 -3.46 16 19 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 20 C -0.53 -31.17 9.66 25.60 0.25 -30.92 16 21 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 22 C 0.01 0.39 5.47 84.65 0.46 0.86 16 23 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 24 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 28 C 0.57 15.18 6.68 86.82 0.58 15.76 16 29 O -0.48 -15.50 15.57 9.59 0.15 -15.35 16 30 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.08 -0.03 8.08 -2.38 -0.02 -0.05 16 32 H 0.09 -0.23 8.08 -2.39 -0.02 -0.24 16 33 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.11 1.83 8.12 -2.38 -0.02 1.81 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.43 6.82 -2.39 -0.02 1.41 16 39 H 0.07 2.43 8.13 -2.39 -0.02 2.41 16 40 H 0.07 2.47 8.13 -2.39 -0.02 2.46 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 44 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 45 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -80.47 387.55 6.35 -74.12 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.96 Total: 5.44 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.97 Total: 8.56 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -1.42 Total: -75.54 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -0.04 Total: -59.35 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -80.47 6.35 -74.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791407449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.923 kcal (2) G-P(sol) polarization free energy of solvation -80.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds