Wall clock time and date at job start Wed Apr 1 2020 03:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48506 * 109.47240 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47417 * 119.99504 * 3 2 1 6 6 H 1.48504 * 109.47172 * 239.99780 * 3 2 1 7 7 C 1.37875 * 120.00274 * 180.26798 * 2 1 3 8 8 H 1.08001 * 120.00343 * 173.27980 * 7 2 1 9 9 C 1.50704 * 119.99779 * 353.28490 * 7 2 1 10 10 H 1.09001 * 109.47162 * 326.90653 * 9 7 2 11 11 C 1.53004 * 109.46872 * 206.91458 * 9 7 2 12 12 C 1.50698 * 109.47436 * 65.97305 * 11 9 7 13 13 O 1.20825 * 119.99804 * 0.02562 * 12 11 9 14 14 O 1.34227 * 119.99983 * 179.97438 * 12 11 9 15 15 C 1.45197 * 117.00019 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47222 * 180.02562 * 15 14 12 17 17 O 1.21229 * 119.99618 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00315 * 180.02562 * 16 15 14 19 19 C 1.46755 * 124.34977 * 179.72201 * 18 16 15 20 20 C 1.54666 * 105.38273 * 162.85389 * 19 18 16 21 21 C 1.54626 * 101.68392 * 25.76196 * 20 19 18 22 22 C 1.34426 * 124.34285 * 0.02562 * 18 16 15 23 23 O 1.21217 * 124.94480 * 0.43433 * 22 18 16 24 24 C 1.50698 * 109.47407 * 86.91139 * 9 7 2 25 25 C 1.38236 * 119.99776 * 54.45088 * 24 9 7 26 26 C 1.38237 * 119.99319 * 179.78839 * 25 24 9 27 27 C 1.38230 * 120.00504 * 0.44116 * 26 25 24 28 28 C 1.38244 * 119.99897 * 359.81315 * 27 26 25 29 29 C 1.38231 * 119.99983 * 234.72576 * 24 9 7 30 30 H 0.97003 * 119.99283 * 174.41676 * 1 2 3 31 31 H 1.09004 * 109.46974 * 185.97883 * 11 9 7 32 32 H 1.09000 * 109.47084 * 305.96985 * 11 9 7 33 33 H 1.09003 * 109.46747 * 299.99748 * 15 14 12 34 34 H 1.08995 * 109.47600 * 59.99834 * 15 14 12 35 35 H 1.08995 * 110.24925 * 281.97780 * 19 18 16 36 36 H 1.08999 * 110.25076 * 43.98542 * 19 18 16 37 37 H 1.09002 * 111.19079 * 267.59695 * 20 19 18 38 38 H 1.08997 * 110.82334 * 143.77741 * 20 19 18 39 39 H 1.09000 * 110.49371 * 216.31192 * 21 20 19 40 40 H 1.09000 * 110.59657 * 93.72291 * 21 20 19 41 41 H 1.07995 * 120.00532 * 359.97438 * 25 24 9 42 42 H 1.08004 * 119.99635 * 180.27189 * 26 25 24 43 43 H 1.07997 * 120.00489 * 179.83259 * 27 26 25 44 44 H 1.07997 * 119.99969 * 179.97438 * 28 27 26 45 45 H 1.08008 * 120.00004 * 359.97428 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0056 8 1 3.0790 -1.1967 -0.1150 9 6 1.2588 -2.4954 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1828 -3.5455 0.7610 12 6 2.5235 -3.1441 2.1730 13 8 2.0731 -2.1230 2.6361 14 8 3.3264 -3.9214 2.9165 15 6 3.6112 -3.4729 4.2678 16 6 4.5222 -4.4645 4.9447 17 8 4.8941 -5.4517 4.3474 18 7 4.9225 -4.2542 6.2143 19 6 5.8017 -5.1577 6.9657 20 6 6.3280 -4.3220 8.1560 21 6 5.2028 -3.2751 8.3255 22 6 4.5630 -3.1930 6.9570 23 8 3.8323 -2.3004 6.5845 24 6 0.8005 -2.9672 -1.2149 25 6 1.7149 -3.1136 -2.2412 26 6 1.2951 -3.5506 -3.4837 27 6 -0.0404 -3.8324 -3.7024 28 6 -0.9557 -3.6809 -2.6775 29 6 -0.5351 -3.2480 -1.4338 30 1 -0.4849 -0.8361 -0.0817 31 1 1.6797 -4.5125 0.7694 32 1 3.0977 -3.6172 0.1728 33 1 4.0981 -2.4983 4.2321 34 1 2.6797 -3.3934 4.8282 35 1 5.2388 -6.0188 7.3257 36 1 6.6317 -5.4839 6.3391 37 1 7.2749 -3.8406 7.9113 38 1 6.4251 -4.9387 9.0495 39 1 5.6199 -2.3092 8.6102 40 1 4.4766 -3.6093 9.0665 41 1 2.7576 -2.8895 -2.0716 42 1 2.0102 -3.6692 -4.2844 43 1 -0.3688 -4.1712 -4.6738 44 1 -1.9991 -3.9006 -2.8484 45 1 -1.2502 -3.1297 -0.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795981661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:44 Heat of formation + Delta-G solvation = -127.340616 kcal Electronic energy + Delta-G solvation = -29651.485884 eV Core-core repulsion = 25406.302834 eV Total energy + Delta-G solvation = -4245.183051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86412 -39.92530 -38.82524 -38.43956 -36.97431 -35.90663 -34.30030 -33.08240 -31.43721 -30.12470 -29.59000 -28.60868 -27.96600 -25.28072 -23.71555 -22.93648 -22.40492 -21.70518 -20.69439 -19.62758 -19.38359 -17.76932 -17.65428 -17.01242 -16.94895 -16.43686 -16.20589 -15.81791 -15.28775 -14.91487 -14.75001 -14.38296 -14.35229 -14.17669 -14.03585 -13.68108 -13.54917 -13.37521 -13.12783 -12.66538 -12.52248 -12.39246 -12.27077 -12.07551 -11.83322 -11.63858 -11.52815 -11.04134 -10.73877 -10.58132 -10.45579 -10.36171 -10.31691 -10.17705 -10.05682 -10.00760 -9.75397 -9.65548 -8.70052 -8.34667 -8.14573 -7.67717 -6.27642 -3.98420 1.28955 1.95710 2.18369 2.23037 2.47943 3.00800 3.20628 3.48883 3.54187 3.64591 3.69973 3.83441 4.19437 4.26707 4.49256 4.58502 4.65460 4.90250 5.00536 5.14341 5.18221 5.22111 5.27854 5.38906 5.39574 5.54584 5.59409 5.61130 5.62548 5.74858 5.95473 6.00000 6.13303 6.19823 6.29972 6.37738 6.53901 6.76037 6.86048 6.97645 7.14011 7.21586 7.33759 7.35181 7.44265 7.67368 7.83406 8.14385 8.45565 8.52237 8.91354 9.71323 11.11671 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.002731 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.278313 B =10251.458907 C =11654.974185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.034 3.966 3 Si 1.060 2.940 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.578 4.578 8 H 0.048 0.952 9 C 0.069 3.931 10 H 0.052 0.948 11 C -0.085 4.085 12 C 0.458 3.542 13 O -0.463 6.463 14 O -0.356 6.356 15 C 0.058 3.942 16 C 0.532 3.468 17 O -0.475 6.475 18 N -0.581 5.581 19 C 0.093 3.907 20 C -0.131 4.131 21 C -0.154 4.154 22 C 0.515 3.485 23 O -0.477 6.477 24 C -0.035 4.035 25 C -0.105 4.105 26 C -0.129 4.129 27 C -0.150 4.150 28 C -0.125 4.125 29 C -0.128 4.128 30 H 0.272 0.728 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.762 -11.636 13.967 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.172 4.172 3 Si 0.889 3.111 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.615 4.615 8 H 0.066 0.934 9 C 0.050 3.950 10 H 0.070 0.930 11 C -0.123 4.123 12 C 0.299 3.701 13 O -0.345 6.345 14 O -0.275 6.275 15 C -0.019 4.019 16 C 0.322 3.678 17 O -0.345 6.345 18 N -0.328 5.328 19 C -0.028 4.028 20 C -0.168 4.168 21 C -0.194 4.194 22 C 0.304 3.696 23 O -0.348 6.348 24 C -0.035 4.035 25 C -0.123 4.123 26 C -0.148 4.148 27 C -0.168 4.168 28 C -0.143 4.143 29 C -0.146 4.146 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.171 -9.696 13.568 19.534 hybrid contribution 0.232 -1.475 -0.017 1.493 sum 10.403 -11.171 13.551 20.412 Atomic orbital electron populations 1.70744 1.06936 1.31077 1.44957 1.25608 0.96371 1.02259 0.92941 0.83684 0.75162 0.75917 0.76358 1.20815 1.21439 1.21581 1.21586 0.93957 0.90638 1.55313 0.93372 1.17956 0.95527 0.92837 0.88680 0.92973 1.21491 1.02533 1.00781 0.87532 1.24088 0.75452 0.81857 0.88701 1.90744 1.48782 1.23366 1.71578 1.86553 1.64587 1.52392 1.23959 1.22613 0.99927 0.96298 0.83062 1.20749 0.80256 0.86846 0.79986 1.90745 1.52809 1.28047 1.62864 1.47244 1.47132 1.24839 1.13588 1.22378 0.94372 0.92836 0.93262 1.22693 0.98514 0.97235 0.98398 1.22420 0.99392 1.02993 0.94555 1.21473 0.79822 0.80242 0.88100 1.90877 1.33679 1.34496 1.75759 1.20713 0.92636 0.91750 0.98434 1.20942 0.99965 0.98905 0.92457 1.21022 0.95614 1.01064 0.97060 1.20845 0.93743 1.03842 0.98377 1.20963 0.98565 1.01007 0.93740 1.21064 0.96048 1.00615 0.96914 0.91716 0.90113 0.88824 0.87297 0.87453 0.89325 0.88607 0.89253 0.88203 0.86853 0.86673 0.86533 0.87336 0.87505 0.87365 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.56 55.43 0.75 -26.72 16 2 C 0.03 0.99 5.45 -17.82 -0.10 0.89 16 3 Si 1.06 26.26 29.91 -169.99 -5.08 21.17 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.58 -15.77 6.35 -34.44 -0.22 -15.99 16 8 H 0.05 1.32 7.82 -52.49 -0.41 0.90 16 9 C 0.07 1.66 1.23 -92.92 -0.11 1.55 16 10 H 0.05 1.40 6.59 -51.93 -0.34 1.06 16 11 C -0.09 -1.76 5.07 -27.88 -0.14 -1.90 16 12 C 0.46 9.95 7.71 36.00 0.28 10.23 16 13 O -0.46 -11.70 14.77 -18.75 -0.28 -11.98 16 14 O -0.36 -6.91 9.75 -45.90 -0.45 -7.36 16 15 C 0.06 0.98 4.21 36.01 0.15 1.13 16 16 C 0.53 7.70 7.84 -10.98 -0.09 7.61 16 17 O -0.47 -7.96 16.72 -14.07 -0.24 -8.19 16 18 N -0.58 -6.09 2.99 -114.05 -0.34 -6.43 16 19 C 0.09 0.56 6.85 -3.03 -0.02 0.54 16 20 C -0.13 -0.38 7.19 -25.00 -0.18 -0.56 16 21 C -0.15 -0.73 6.86 -26.74 -0.18 -0.92 16 22 C 0.51 5.25 7.90 -10.85 -0.09 5.17 16 23 O -0.48 -6.93 15.07 5.61 0.08 -6.84 16 24 C -0.03 -0.77 4.54 -104.63 -0.47 -1.25 16 25 C -0.10 -2.16 8.90 -39.58 -0.35 -2.51 16 26 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 27 C -0.15 -2.62 10.05 -39.58 -0.40 -3.01 16 28 C -0.12 -2.29 10.05 -39.58 -0.40 -2.69 16 29 C -0.13 -2.68 9.18 -39.59 -0.36 -3.04 16 30 H 0.27 8.11 6.24 -40.82 -0.25 7.86 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.09 1.82 7.97 -51.93 -0.41 1.40 16 33 H 0.11 1.88 7.58 -51.93 -0.39 1.49 16 34 H 0.11 1.79 7.55 -51.93 -0.39 1.40 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.12 2.35 7.85 -52.49 -0.41 1.94 16 42 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.11 2.28 7.95 -52.48 -0.42 1.86 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -36.65 384.18 -8.90 -45.55 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.06 Total: 2.53 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.08 Total: -7.52 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.41 Total: -33.15 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.88 Total: -34.37 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.08 Total: 21.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.65 -8.90 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795981661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.793 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds