Wall clock time and date at job start Wed Apr 1 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48506 * 109.47240 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47417 * 119.99504 * 3 2 1 6 6 H 1.48504 * 109.47172 * 239.99780 * 3 2 1 7 7 C 1.37875 * 120.00274 * 180.26798 * 2 1 3 8 8 H 1.08001 * 120.00343 * 173.27980 * 7 2 1 9 9 C 1.50704 * 119.99779 * 353.28490 * 7 2 1 10 10 H 1.09001 * 109.47162 * 326.90653 * 9 7 2 11 11 C 1.53004 * 109.46872 * 206.91458 * 9 7 2 12 12 C 1.50698 * 109.47436 * 65.97305 * 11 9 7 13 13 O 1.20825 * 119.99804 * 0.02562 * 12 11 9 14 14 O 1.34227 * 119.99983 * 179.97438 * 12 11 9 15 15 C 1.45197 * 117.00019 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47222 * 180.02562 * 15 14 12 17 17 O 1.21229 * 119.99618 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00315 * 180.02562 * 16 15 14 19 19 C 1.46755 * 124.34977 * 179.72201 * 18 16 15 20 20 C 1.54666 * 105.38273 * 162.85389 * 19 18 16 21 21 C 1.54626 * 101.68392 * 25.76196 * 20 19 18 22 22 C 1.34426 * 124.34285 * 0.02562 * 18 16 15 23 23 O 1.21217 * 124.94480 * 0.43433 * 22 18 16 24 24 C 1.50698 * 109.47407 * 86.91139 * 9 7 2 25 25 C 1.38236 * 119.99776 * 54.45088 * 24 9 7 26 26 C 1.38237 * 119.99319 * 179.78839 * 25 24 9 27 27 C 1.38230 * 120.00504 * 0.44116 * 26 25 24 28 28 C 1.38244 * 119.99897 * 359.81315 * 27 26 25 29 29 C 1.38231 * 119.99983 * 234.72576 * 24 9 7 30 30 H 0.97003 * 119.99283 * 174.41676 * 1 2 3 31 31 H 1.09004 * 109.46974 * 185.97883 * 11 9 7 32 32 H 1.09000 * 109.47084 * 305.96985 * 11 9 7 33 33 H 1.09003 * 109.46747 * 299.99748 * 15 14 12 34 34 H 1.08995 * 109.47600 * 59.99834 * 15 14 12 35 35 H 1.08995 * 110.24925 * 281.97780 * 19 18 16 36 36 H 1.08999 * 110.25076 * 43.98542 * 19 18 16 37 37 H 1.09002 * 111.19079 * 267.59695 * 20 19 18 38 38 H 1.08997 * 110.82334 * 143.77741 * 20 19 18 39 39 H 1.09000 * 110.49371 * 216.31192 * 21 20 19 40 40 H 1.09000 * 110.59657 * 93.72291 * 21 20 19 41 41 H 1.07995 * 120.00532 * 359.97438 * 25 24 9 42 42 H 1.08004 * 119.99635 * 180.27189 * 26 25 24 43 43 H 1.07997 * 120.00489 * 179.83259 * 27 26 25 44 44 H 1.07997 * 119.99969 * 179.97438 * 28 27 26 45 45 H 1.08008 * 120.00004 * 359.97428 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0056 8 1 3.0790 -1.1967 -0.1150 9 6 1.2588 -2.4954 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1828 -3.5455 0.7610 12 6 2.5235 -3.1441 2.1730 13 8 2.0731 -2.1230 2.6361 14 8 3.3264 -3.9214 2.9165 15 6 3.6112 -3.4729 4.2678 16 6 4.5222 -4.4645 4.9447 17 8 4.8941 -5.4517 4.3474 18 7 4.9225 -4.2542 6.2143 19 6 5.8017 -5.1577 6.9657 20 6 6.3280 -4.3220 8.1560 21 6 5.2028 -3.2751 8.3255 22 6 4.5630 -3.1930 6.9570 23 8 3.8323 -2.3004 6.5845 24 6 0.8005 -2.9672 -1.2149 25 6 1.7149 -3.1136 -2.2412 26 6 1.2951 -3.5506 -3.4837 27 6 -0.0404 -3.8324 -3.7024 28 6 -0.9557 -3.6809 -2.6775 29 6 -0.5351 -3.2480 -1.4338 30 1 -0.4849 -0.8361 -0.0817 31 1 1.6797 -4.5125 0.7694 32 1 3.0977 -3.6172 0.1728 33 1 4.0981 -2.4983 4.2321 34 1 2.6797 -3.3934 4.8282 35 1 5.2388 -6.0188 7.3257 36 1 6.6317 -5.4839 6.3391 37 1 7.2749 -3.8406 7.9113 38 1 6.4251 -4.9387 9.0495 39 1 5.6199 -2.3092 8.6102 40 1 4.4766 -3.6093 9.0665 41 1 2.7576 -2.8895 -2.0716 42 1 2.0102 -3.6692 -4.2844 43 1 -0.3688 -4.1712 -4.6738 44 1 -1.9991 -3.9006 -2.8484 45 1 -1.2502 -3.1297 -0.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795981661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:43 Heat of formation + Delta-G solvation = -148.941581 kcal Electronic energy + Delta-G solvation = -29652.422573 eV Core-core repulsion = 25406.302834 eV Total energy + Delta-G solvation = -4246.119739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.78760 -41.58409 -40.14552 -39.85623 -37.95694 -37.46437 -36.17507 -33.84274 -33.42333 -31.63543 -31.07064 -29.88075 -28.66698 -27.19022 -25.10375 -24.37185 -23.25010 -22.93369 -22.27344 -21.36672 -20.40538 -19.10036 -18.82507 -18.60074 -18.40548 -17.77622 -17.62437 -17.27990 -16.49688 -16.27955 -15.78599 -15.70392 -15.69364 -15.58507 -15.32018 -15.04794 -14.90051 -14.40521 -14.27032 -14.08388 -13.96417 -13.82755 -13.69523 -13.45099 -13.24125 -12.85986 -12.66338 -12.47028 -12.14717 -12.09290 -11.98701 -11.96396 -11.79574 -11.72399 -11.57711 -11.49686 -11.24058 -10.82901 -10.69644 -10.48186 -9.65999 -9.32573 -8.51080 -6.20113 0.25252 0.65225 0.67899 0.90471 1.22685 1.46497 1.52138 1.55990 1.72336 1.87069 2.57808 2.84108 3.07410 3.22008 3.29815 3.52589 3.74285 3.77211 3.93615 3.98575 4.06472 4.07996 4.20409 4.26862 4.31877 4.42420 4.50964 4.52496 4.54487 4.66877 4.74304 4.81627 4.91073 4.92260 5.06072 5.15207 5.15635 5.21349 5.34671 5.36116 5.38469 5.72849 5.78248 5.87817 6.16382 6.25252 6.28406 6.35138 6.52932 6.69477 6.78863 7.55721 8.89140 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.002731 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.278313 B =10251.458907 C =11654.974185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.019 4.019 3 Si 1.096 2.904 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.572 4.572 8 H 0.042 0.958 9 C 0.073 3.927 10 H 0.013 0.987 11 C -0.082 4.082 12 C 0.463 3.537 13 O -0.507 6.507 14 O -0.353 6.353 15 C 0.054 3.946 16 C 0.539 3.461 17 O -0.501 6.501 18 N -0.578 5.578 19 C 0.081 3.919 20 C -0.112 4.112 21 C -0.142 4.142 22 C 0.505 3.495 23 O -0.529 6.529 24 C -0.059 4.059 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.141 4.141 28 C -0.124 4.124 29 C -0.149 4.149 30 H 0.263 0.737 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.137 0.863 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.572 -13.352 13.980 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.219 4.219 3 Si 0.920 3.080 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.610 4.610 8 H 0.060 0.940 9 C 0.054 3.946 10 H 0.031 0.969 11 C -0.120 4.120 12 C 0.306 3.694 13 O -0.393 6.393 14 O -0.270 6.270 15 C -0.023 4.023 16 C 0.329 3.671 17 O -0.374 6.374 18 N -0.324 5.324 19 C -0.038 4.038 20 C -0.150 4.150 21 C -0.181 4.181 22 C 0.297 3.703 23 O -0.404 6.404 24 C -0.060 4.060 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.159 4.159 28 C -0.142 4.142 29 C -0.168 4.168 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.155 0.845 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.035 -11.460 13.615 21.484 hybrid contribution -0.315 -1.068 0.018 1.113 sum 11.720 -12.527 13.633 21.912 Atomic orbital electron populations 1.70822 1.07830 1.30622 1.48197 1.26748 0.96565 1.05528 0.93011 0.83220 0.74516 0.72965 0.77298 1.21113 1.21275 1.19013 1.21845 0.93729 0.92093 1.53337 0.93956 1.17768 0.94301 0.92846 0.89724 0.96882 1.21457 1.02766 1.00910 0.86835 1.24303 0.74762 0.81157 0.89148 1.90727 1.50585 1.25346 1.72634 1.86523 1.63620 1.51681 1.25192 1.22775 1.00575 0.97154 0.81814 1.20256 0.79720 0.85699 0.81436 1.90726 1.53865 1.28724 1.64036 1.47388 1.47017 1.25817 1.12130 1.22829 0.93845 0.93173 0.93934 1.22770 0.97727 0.96350 0.98109 1.22551 1.00123 1.04649 0.90787 1.22679 0.78779 0.78924 0.89922 1.90854 1.36069 1.36355 1.77102 1.20483 0.93753 0.94194 0.97540 1.21031 0.99602 0.99982 0.93350 1.21411 0.96895 0.99327 0.96655 1.21337 0.93094 1.01817 0.99626 1.21312 1.00479 0.99742 0.92693 1.21137 0.95428 1.01972 0.98230 0.92702 0.87429 0.87241 0.88291 0.87930 0.87718 0.88670 0.88329 0.84546 0.85405 0.84227 0.86808 0.83918 0.83421 0.84480 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.56 21.45 0.29 -59.37 16 2 C -0.02 -1.14 5.45 84.65 0.46 -0.68 16 3 Si 1.10 54.27 29.91 68.60 2.05 56.32 16 4 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.57 -32.41 6.35 25.60 0.16 -32.25 16 8 H 0.04 2.38 7.82 -2.91 -0.02 2.35 16 9 C 0.07 3.67 1.23 -12.28 -0.02 3.65 16 10 H 0.01 0.75 6.59 -2.39 -0.02 0.73 16 11 C -0.08 -3.49 5.07 29.85 0.15 -3.34 16 12 C 0.46 21.14 7.71 71.24 0.55 21.69 16 13 O -0.51 -27.36 14.77 21.97 0.32 -27.03 16 14 O -0.35 -14.26 9.75 -45.03 -0.44 -14.70 16 15 C 0.05 1.92 4.21 71.24 0.30 2.22 16 16 C 0.54 16.03 7.84 87.66 0.69 16.71 16 17 O -0.50 -16.99 16.72 15.93 0.27 -16.73 16 18 N -0.58 -11.84 2.99 -751.76 -2.25 -14.08 16 19 C 0.08 0.80 6.85 86.90 0.60 1.39 16 20 C -0.11 -0.21 7.19 31.72 0.23 0.02 16 21 C -0.14 -0.93 6.86 30.59 0.21 -0.72 16 22 C 0.50 10.10 7.90 87.90 0.69 10.79 16 23 O -0.53 -16.10 15.07 -2.84 -0.04 -16.15 16 24 C -0.06 -2.69 4.54 -19.87 -0.09 -2.78 16 25 C -0.12 -4.94 8.90 22.27 0.20 -4.74 16 26 C -0.13 -4.18 10.05 22.27 0.22 -3.95 16 27 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 28 C -0.12 -4.33 10.05 22.27 0.22 -4.10 16 29 C -0.15 -6.35 9.18 22.27 0.20 -6.15 16 30 H 0.26 16.63 6.24 -92.71 -0.58 16.06 16 31 H 0.11 3.96 8.14 -2.38 -0.02 3.94 16 32 H 0.11 4.29 7.97 -2.39 -0.02 4.27 16 33 H 0.10 3.71 7.58 -2.39 -0.02 3.70 16 34 H 0.10 3.73 7.55 -2.39 -0.02 3.71 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 37 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.14 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.11 4.56 7.85 -2.91 -0.02 4.54 16 42 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 43 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 44 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 45 H 0.10 4.31 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -85.86 384.18 6.41 -79.45 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 1.20 Total: 18.71 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.01 Total: -6.41 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -1.96 Total: -73.46 kcal Atomic # 8 Polarization: -74.72 SS G_CDS: 0.11 Total: -74.61 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 2.05 Total: 56.32 kcal Total: -85.86 6.41 -79.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795981661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.496 kcal (2) G-P(sol) polarization free energy of solvation -85.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds