Wall clock time and date at job start Wed Apr 1 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42903 * 109.54542 * 188.70859 * 3 2 1 5 5 C 1.42900 * 113.99421 * 59.82291 * 4 3 2 6 6 C 1.53003 * 109.46967 * 180.02562 * 5 4 3 7 7 O 1.45192 * 109.47427 * 64.99719 * 6 5 4 8 8 C 1.34705 * 117.00548 * 180.02562 * 7 6 5 9 9 O 1.21467 * 119.99408 * 0.02562 * 8 7 6 10 10 C 1.47763 * 120.00644 * 179.97438 * 8 7 6 11 11 C 1.39974 * 120.02920 * 359.95954 * 10 8 7 12 12 C 1.38312 * 120.35236 * 179.97438 * 11 10 8 13 13 C 1.37761 * 120.42128 * 0.04688 * 12 11 10 14 14 C 1.40755 * 120.04753 * 359.97438 * 13 12 11 15 15 C 1.41438 * 120.17127 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00284 * 335.19320 * 15 14 13 17 17 C 1.39938 * 119.99980 * 155.20469 * 15 14 13 18 18 N 1.30832 * 120.00122 * 342.28374 * 17 15 14 19 19 Si 1.86801 * 120.00083 * 162.28288 * 17 15 14 20 20 H 1.48498 * 109.47075 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47070 * 119.99721 * 19 17 15 22 22 H 1.48496 * 109.47162 * 240.00036 * 19 17 15 23 23 C 1.39053 * 120.03320 * 179.97438 * 10 8 7 24 24 C 1.53176 * 109.61665 * 308.93376 * 3 2 1 25 25 C 1.53090 * 109.16502 * 62.93422 * 24 3 2 26 26 O 1.42902 * 109.41799 * 57.60512 * 25 24 3 27 27 C 1.42897 * 114.09700 * 298.84707 * 26 25 24 28 28 C 1.53092 * 109.41769 * 61.15784 * 27 26 25 29 29 H 1.09002 * 109.47438 * 60.00166 * 5 4 3 30 30 H 1.08999 * 109.47465 * 299.99674 * 5 4 3 31 31 H 1.09009 * 109.46951 * 305.00017 * 6 5 4 32 32 H 1.09003 * 109.47126 * 185.00544 * 6 5 4 33 33 H 1.07997 * 119.82004 * 0.04045 * 11 10 8 34 34 H 1.07998 * 119.78959 * 180.02562 * 12 11 10 35 35 H 1.07998 * 119.97374 * 179.97438 * 13 12 11 36 36 H 0.96997 * 120.00049 * 180.02562 * 18 17 15 37 37 H 1.07991 * 120.20327 * 0.25701 * 23 10 8 38 38 H 1.09006 * 109.52029 * 182.84033 * 24 3 2 39 39 H 1.08996 * 109.52116 * 303.02249 * 24 3 2 40 40 H 1.09005 * 109.47823 * 297.62745 * 25 24 3 41 41 H 1.09003 * 109.49237 * 177.60059 * 25 24 3 42 42 H 1.09000 * 109.48042 * 301.16935 * 27 26 25 43 43 H 1.08999 * 109.49075 * 181.14582 * 27 26 25 44 44 H 1.09001 * 109.52035 * 182.48884 * 28 27 26 45 45 H 1.08991 * 109.52554 * 62.29684 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0854 1.3320 0.2039 5 6 2.6611 1.9193 1.4356 6 6 3.2274 3.3363 1.5468 7 8 2.6534 4.1700 0.5059 8 6 3.0509 5.4564 0.4637 9 8 3.8555 5.8701 1.2742 10 6 2.5091 6.3638 -0.5689 11 6 1.5833 5.8872 -1.5044 12 6 1.0715 6.7308 -2.4735 13 6 1.4672 8.0492 -2.5303 14 6 2.3975 8.5466 -1.5986 15 6 2.8052 9.8998 -1.6542 16 1 2.7478 10.4433 -2.5856 17 6 3.2831 10.5345 -0.5022 18 7 3.0395 10.0212 0.6763 19 14 4.2690 12.1145 -0.6471 20 1 4.4052 12.4834 -2.0791 21 1 3.5688 13.2033 0.0806 22 1 5.6171 11.9126 -0.0581 23 6 2.9187 7.6919 -0.6126 24 6 3.1226 -0.9058 1.1224 25 6 2.6722 -2.3440 0.8532 26 8 3.1564 -2.7623 -0.4246 27 6 2.6702 -1.9802 -1.5172 28 6 3.1207 -0.5274 -1.3434 29 1 3.0226 1.3168 2.2690 30 1 1.5723 1.9605 1.4625 31 1 4.3109 3.3047 1.4307 32 1 2.9786 3.7515 2.5234 33 1 1.2662 4.8554 -1.4684 34 1 0.3573 6.3536 -3.1905 35 1 1.0632 8.7015 -3.2904 36 1 3.3705 10.4613 1.4748 37 1 3.6360 8.0631 0.1042 38 1 4.2114 -0.8649 1.1533 39 1 2.7174 -0.5697 2.0767 40 1 1.5832 -2.3916 0.8626 41 1 3.0714 -3.0009 1.6261 42 1 1.5813 -2.0231 -1.5388 43 1 3.0681 -2.3747 -2.4522 44 1 2.7139 0.0794 -2.1524 45 1 4.2093 -0.4788 -1.3624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809081817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:59 Heat of formation + Delta-G solvation = -129.199462 kcal Electronic energy + Delta-G solvation = -29295.029180 eV Core-core repulsion = 25049.765524 eV Total energy + Delta-G solvation = -4245.263656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.81613 -39.78006 -38.18606 -37.37202 -36.44823 -35.73805 -33.77259 -33.23916 -31.83911 -30.74109 -29.81296 -29.49004 -25.67155 -25.39803 -24.59859 -23.60495 -22.48219 -22.02458 -20.99934 -19.87169 -18.44326 -17.87935 -17.54785 -16.64224 -16.61916 -16.22242 -16.00286 -15.56204 -15.53851 -15.09496 -14.84816 -14.72201 -14.56597 -14.13319 -13.98944 -13.50314 -13.30905 -13.02157 -12.99175 -12.84484 -12.70666 -12.63701 -12.46950 -12.21246 -11.92165 -11.77228 -11.67623 -11.24364 -11.16994 -11.12023 -11.05236 -10.77656 -10.53088 -10.34120 -10.29868 -10.21805 -10.14593 -9.73731 -9.49691 -9.26322 -7.76002 -7.57119 -6.84685 -4.45296 1.95949 2.14679 2.28471 2.75737 3.05686 3.09870 3.10548 3.11913 3.12231 3.24407 3.41328 3.57960 3.89012 3.99750 4.12233 4.30375 4.56154 4.63900 4.65111 4.70749 4.82867 4.91069 4.96557 5.03252 5.15328 5.18576 5.33641 5.39521 5.46086 5.48554 5.52920 5.59223 5.77261 6.11780 6.39780 6.54413 6.61321 6.62385 6.89771 6.92771 6.96419 7.05121 7.15253 7.29512 7.66780 7.73950 7.89188 8.08565 8.42699 8.52344 8.75234 8.77453 10.10880 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.002120 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.524864 B =13201.591204 C =13782.213742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.177 3.823 3 C 0.218 3.782 4 O -0.342 6.342 5 C 0.054 3.946 6 C 0.069 3.931 7 O -0.349 6.349 8 C 0.513 3.487 9 O -0.519 6.519 10 C -0.115 4.115 11 C -0.192 4.192 12 C -0.104 4.104 13 C -0.200 4.200 14 C 0.095 3.905 15 C -0.459 4.459 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.787 5.787 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.088 4.088 24 C -0.179 4.179 25 C 0.061 3.939 26 O -0.375 6.375 27 C 0.060 3.940 28 C -0.140 4.140 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.284 0.716 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.107 0.893 42 H 0.052 0.948 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -21.318 1.749 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.143 4.143 3 C 0.175 3.825 4 O -0.259 6.259 5 C -0.022 4.022 6 C -0.006 4.006 7 O -0.267 6.267 8 C 0.360 3.640 9 O -0.409 6.409 10 C -0.116 4.116 11 C -0.211 4.211 12 C -0.122 4.122 13 C -0.220 4.220 14 C 0.092 3.908 15 C -0.488 4.488 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.412 5.412 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.196 1.196 23 C -0.108 4.108 24 C -0.218 4.218 25 C -0.016 4.016 26 O -0.293 6.293 27 C -0.017 4.017 28 C -0.179 4.179 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.153 0.847 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.129 0.871 44 H 0.114 0.886 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.017 -21.201 2.118 21.331 hybrid contribution 0.412 0.983 0.528 1.190 sum 1.429 -20.218 2.646 20.440 Atomic orbital electron populations 1.81212 1.12791 1.06332 1.07279 1.29959 0.95840 0.94354 0.94130 1.18984 0.79750 0.85432 0.98364 1.88249 1.72011 1.25847 1.39755 1.22806 0.99928 0.92649 0.86848 1.22880 0.99194 0.87310 0.91207 1.86655 1.65348 1.22590 1.52084 1.21883 0.78445 0.79917 0.83713 1.90761 1.33221 1.76391 1.40493 1.18822 1.03079 0.93063 0.96669 1.20564 1.03077 0.98773 0.98711 1.20510 0.99669 0.94152 0.97905 1.21190 1.01782 0.95264 1.03790 1.17550 0.89465 0.93265 0.90493 1.19593 1.37347 0.95657 0.96250 0.89895 1.25970 0.94315 0.99646 0.94666 1.69789 1.34143 1.38409 0.98869 0.86219 0.79841 0.80683 0.79794 1.18292 1.19911 1.19556 1.21641 0.99675 0.89289 1.00167 1.22910 1.04486 0.96021 0.98392 1.22601 0.98583 0.94078 0.86368 1.87981 1.71398 1.55507 1.14421 1.22678 0.98684 0.89376 0.90957 1.22278 1.04305 0.96961 0.94344 0.90165 0.91908 0.90197 0.89560 0.87961 0.88573 0.88326 0.90487 0.84710 0.87446 0.89430 0.93076 0.87521 0.93012 0.87098 0.88574 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.31 18.54 42.15 0.78 -4.53 16 2 C 0.18 1.94 10.61 -20.76 -0.22 1.72 16 3 C 0.22 1.91 0.84 -93.22 -0.08 1.83 16 4 O -0.34 -3.84 9.95 -38.80 -0.39 -4.23 16 5 C 0.05 0.57 5.63 37.16 0.21 0.78 16 6 C 0.07 0.95 5.85 37.16 0.22 1.17 16 7 O -0.35 -6.55 9.43 -43.29 -0.41 -6.96 16 8 C 0.51 11.50 7.90 34.62 0.27 11.77 16 9 O -0.52 -12.48 16.12 -19.24 -0.31 -12.79 16 10 C -0.12 -2.79 5.87 -105.05 -0.62 -3.41 16 11 C -0.19 -4.30 9.62 -38.90 -0.37 -4.67 16 12 C -0.10 -2.28 10.01 -39.73 -0.40 -2.68 16 13 C -0.20 -4.75 9.78 -38.81 -0.38 -5.13 16 14 C 0.09 2.49 5.57 -106.87 -0.60 1.89 16 15 C -0.46 -11.92 9.05 -37.73 -0.34 -12.26 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 17 C 0.07 1.81 5.14 -17.34 -0.09 1.73 16 18 N -0.79 -20.57 10.97 55.55 0.61 -19.96 16 19 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.09 -2.34 8.23 -38.43 -0.32 -2.66 16 24 C -0.18 -1.08 4.59 -26.59 -0.12 -1.20 16 25 C 0.06 0.36 6.61 37.20 0.25 0.61 16 26 O -0.37 -2.84 10.77 -35.23 -0.38 -3.22 16 27 C 0.06 0.39 6.61 37.21 0.25 0.64 16 28 C -0.14 -1.02 5.26 -26.59 -0.14 -1.16 16 29 H 0.08 0.55 6.51 -51.93 -0.34 0.21 16 30 H 0.06 0.72 7.16 -51.93 -0.37 0.35 16 31 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.10 2.11 7.59 -52.49 -0.40 1.71 16 34 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 37 H 0.14 3.81 5.77 -52.49 -0.30 3.50 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.43 6.74 -51.93 -0.35 0.08 16 40 H 0.05 0.34 7.39 -51.93 -0.38 -0.05 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.37 7.39 -51.93 -0.38 -0.02 16 43 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -31.57 381.70 -7.73 -39.31 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.88 Total: 4.19 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -2.48 Total: -11.04 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 1.39 Total: -24.49 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.48 Total: -27.20 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.57 -7.73 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809081817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.894 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds