Wall clock time and date at job start Wed Apr 1 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42903 * 109.54542 * 188.70859 * 3 2 1 5 5 C 1.42900 * 113.99421 * 59.82291 * 4 3 2 6 6 C 1.53003 * 109.46967 * 180.02562 * 5 4 3 7 7 O 1.45192 * 109.47427 * 64.99719 * 6 5 4 8 8 C 1.34705 * 117.00548 * 180.02562 * 7 6 5 9 9 O 1.21467 * 119.99408 * 0.02562 * 8 7 6 10 10 C 1.47763 * 120.00644 * 179.97438 * 8 7 6 11 11 C 1.39974 * 120.02920 * 359.95954 * 10 8 7 12 12 C 1.38312 * 120.35236 * 179.97438 * 11 10 8 13 13 C 1.37761 * 120.42128 * 0.04688 * 12 11 10 14 14 C 1.40755 * 120.04753 * 359.97438 * 13 12 11 15 15 C 1.41438 * 120.17127 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00284 * 335.19320 * 15 14 13 17 17 C 1.39938 * 119.99980 * 155.20469 * 15 14 13 18 18 N 1.30832 * 120.00122 * 342.28374 * 17 15 14 19 19 Si 1.86801 * 120.00083 * 162.28288 * 17 15 14 20 20 H 1.48498 * 109.47075 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47070 * 119.99721 * 19 17 15 22 22 H 1.48496 * 109.47162 * 240.00036 * 19 17 15 23 23 C 1.39053 * 120.03320 * 179.97438 * 10 8 7 24 24 C 1.53176 * 109.61665 * 308.93376 * 3 2 1 25 25 C 1.53090 * 109.16502 * 62.93422 * 24 3 2 26 26 O 1.42902 * 109.41799 * 57.60512 * 25 24 3 27 27 C 1.42897 * 114.09700 * 298.84707 * 26 25 24 28 28 C 1.53092 * 109.41769 * 61.15784 * 27 26 25 29 29 H 1.09002 * 109.47438 * 60.00166 * 5 4 3 30 30 H 1.08999 * 109.47465 * 299.99674 * 5 4 3 31 31 H 1.09009 * 109.46951 * 305.00017 * 6 5 4 32 32 H 1.09003 * 109.47126 * 185.00544 * 6 5 4 33 33 H 1.07997 * 119.82004 * 0.04045 * 11 10 8 34 34 H 1.07998 * 119.78959 * 180.02562 * 12 11 10 35 35 H 1.07998 * 119.97374 * 179.97438 * 13 12 11 36 36 H 0.96997 * 120.00049 * 180.02562 * 18 17 15 37 37 H 1.07991 * 120.20327 * 0.25701 * 23 10 8 38 38 H 1.09006 * 109.52029 * 182.84033 * 24 3 2 39 39 H 1.08996 * 109.52116 * 303.02249 * 24 3 2 40 40 H 1.09005 * 109.47823 * 297.62745 * 25 24 3 41 41 H 1.09003 * 109.49237 * 177.60059 * 25 24 3 42 42 H 1.09000 * 109.48042 * 301.16935 * 27 26 25 43 43 H 1.08999 * 109.49075 * 181.14582 * 27 26 25 44 44 H 1.09001 * 109.52035 * 182.48884 * 28 27 26 45 45 H 1.08991 * 109.52554 * 62.29684 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0854 1.3320 0.2039 5 6 2.6611 1.9193 1.4356 6 6 3.2274 3.3363 1.5468 7 8 2.6534 4.1700 0.5059 8 6 3.0509 5.4564 0.4637 9 8 3.8555 5.8701 1.2742 10 6 2.5091 6.3638 -0.5689 11 6 1.5833 5.8872 -1.5044 12 6 1.0715 6.7308 -2.4735 13 6 1.4672 8.0492 -2.5303 14 6 2.3975 8.5466 -1.5986 15 6 2.8052 9.8998 -1.6542 16 1 2.7478 10.4433 -2.5856 17 6 3.2831 10.5345 -0.5022 18 7 3.0395 10.0212 0.6763 19 14 4.2690 12.1145 -0.6471 20 1 4.4052 12.4834 -2.0791 21 1 3.5688 13.2033 0.0806 22 1 5.6171 11.9126 -0.0581 23 6 2.9187 7.6919 -0.6126 24 6 3.1226 -0.9058 1.1224 25 6 2.6722 -2.3440 0.8532 26 8 3.1564 -2.7623 -0.4246 27 6 2.6702 -1.9802 -1.5172 28 6 3.1207 -0.5274 -1.3434 29 1 3.0226 1.3168 2.2690 30 1 1.5723 1.9605 1.4625 31 1 4.3109 3.3047 1.4307 32 1 2.9786 3.7515 2.5234 33 1 1.2662 4.8554 -1.4684 34 1 0.3573 6.3536 -3.1905 35 1 1.0632 8.7015 -3.2904 36 1 3.3705 10.4613 1.4748 37 1 3.6360 8.0631 0.1042 38 1 4.2114 -0.8649 1.1533 39 1 2.7174 -0.5697 2.0767 40 1 1.5832 -2.3916 0.8626 41 1 3.0714 -3.0009 1.6261 42 1 1.5813 -2.0231 -1.5388 43 1 3.0681 -2.3747 -2.4522 44 1 2.7139 0.0794 -2.1524 45 1 4.2093 -0.4788 -1.3624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809081817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:58 Heat of formation + Delta-G solvation = -147.438773 kcal Electronic energy + Delta-G solvation = -29295.820096 eV Core-core repulsion = 25049.765524 eV Total energy + Delta-G solvation = -4246.054572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60191 -41.29241 -39.28297 -38.80213 -37.53505 -37.16900 -35.63427 -33.96382 -32.38582 -32.30826 -31.41544 -30.98014 -27.31846 -26.31702 -25.53908 -24.76365 -23.44331 -22.90665 -22.80082 -21.58130 -19.69913 -19.21810 -18.33269 -18.06420 -17.79596 -17.39376 -17.10318 -16.77711 -16.53633 -16.47366 -16.15661 -15.69962 -15.48279 -15.21119 -15.09706 -14.93851 -14.63088 -14.44747 -14.31823 -13.99359 -13.69373 -13.58910 -13.51603 -13.36230 -13.03856 -13.01327 -12.82527 -12.77779 -12.59476 -12.37735 -12.22074 -12.03012 -11.99724 -11.63919 -11.57776 -11.55922 -11.32723 -11.10883 -10.97921 -10.72403 -9.63739 -9.46944 -8.70061 -6.41116 0.11368 0.94156 1.29759 1.37961 1.44540 1.44557 1.54332 1.67114 1.78776 2.18953 2.33903 2.51819 2.70713 2.90271 3.42541 3.49658 3.60910 3.74151 3.80216 3.87532 3.97578 4.09937 4.16702 4.24020 4.34997 4.37993 4.48007 4.51246 4.56171 4.59387 4.66460 4.74986 4.83888 4.94484 5.01933 5.03441 5.04793 5.10435 5.24826 5.27127 5.42801 5.78297 5.80028 5.87320 5.99093 6.13321 6.20551 6.21177 6.51225 6.79738 6.85257 6.87107 8.27957 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.002120 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.524864 B =13201.591204 C =13782.213742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.196 3.804 3 C 0.213 3.787 4 O -0.360 6.360 5 C 0.059 3.941 6 C 0.057 3.943 7 O -0.349 6.349 8 C 0.517 3.483 9 O -0.544 6.544 10 C -0.128 4.128 11 C -0.182 4.182 12 C -0.100 4.100 13 C -0.204 4.204 14 C 0.066 3.934 15 C -0.492 4.492 16 H 0.088 0.912 17 C 0.030 3.970 18 N -0.826 5.826 19 Si 0.985 3.015 20 H -0.251 1.251 21 H -0.265 1.265 22 H -0.269 1.269 23 C -0.121 4.121 24 C -0.174 4.174 25 C 0.058 3.942 26 O -0.386 6.386 27 C 0.062 3.938 28 C -0.140 4.140 29 H 0.126 0.874 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.288 0.712 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.129 0.871 42 H 0.041 0.959 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -22.790 1.455 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.123 4.123 3 C 0.170 3.830 4 O -0.277 6.277 5 C -0.017 4.017 6 C -0.016 4.016 7 O -0.266 6.266 8 C 0.365 3.635 9 O -0.436 6.436 10 C -0.130 4.130 11 C -0.202 4.202 12 C -0.118 4.118 13 C -0.223 4.223 14 C 0.063 3.937 15 C -0.521 4.521 16 H 0.106 0.894 17 C -0.185 4.185 18 N -0.452 5.452 19 Si 0.805 3.195 20 H -0.174 1.174 21 H -0.190 1.190 22 H -0.194 1.194 23 C -0.140 4.140 24 C -0.213 4.213 25 C -0.019 4.019 26 O -0.305 6.305 27 C -0.015 4.015 28 C -0.178 4.178 29 H 0.144 0.856 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.147 0.853 42 H 0.060 0.940 43 H 0.147 0.853 44 H 0.108 0.892 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.395 -22.709 1.812 22.824 hybrid contribution 0.224 1.231 0.598 1.387 sum 1.620 -21.479 2.410 21.674 Atomic orbital electron populations 1.81223 1.14284 1.07897 1.08978 1.30464 0.96255 0.92882 0.92658 1.19398 0.78246 0.84970 1.00371 1.88222 1.72099 1.27223 1.40177 1.22863 0.99266 0.91170 0.88378 1.23360 0.99686 0.88234 0.90320 1.86613 1.65217 1.21043 1.53713 1.21602 0.77952 0.81014 0.82946 1.90736 1.34314 1.77221 1.41316 1.19089 1.03356 0.92885 0.97625 1.20877 1.01697 0.99838 0.97774 1.20930 0.99531 0.93230 0.98067 1.21487 1.01002 0.96496 1.03346 1.17921 0.90492 0.93848 0.91408 1.19881 1.39138 0.96092 0.96969 0.89415 1.26880 0.94684 1.03076 0.93901 1.69874 1.35332 1.40233 0.99718 0.85116 0.77955 0.76323 0.80106 1.17413 1.18952 1.19381 1.21458 1.00888 0.90704 1.00998 1.22952 1.05375 0.95170 0.97766 1.22743 0.98165 0.94578 0.86400 1.87971 1.71533 1.55897 1.15058 1.22730 0.98155 0.88962 0.91656 1.22337 1.04953 0.97171 0.93367 0.85646 0.92870 0.89749 0.88610 0.85774 0.84496 0.86641 0.90089 0.87460 0.85868 0.87943 0.94075 0.85283 0.94044 0.85260 0.89159 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.70 18.54 20.00 0.37 -11.33 16 2 C 0.20 4.09 10.61 89.44 0.95 5.04 16 3 C 0.21 3.29 0.84 -12.48 -0.01 3.28 16 4 O -0.36 -7.31 9.95 -145.57 -1.45 -8.76 16 5 C 0.06 1.11 5.63 71.98 0.41 1.51 16 6 C 0.06 1.51 5.85 71.98 0.42 1.93 16 7 O -0.35 -12.86 9.43 -53.49 -0.50 -13.37 16 8 C 0.52 23.47 7.90 70.34 0.56 24.02 16 9 O -0.54 -26.88 16.12 19.94 0.32 -26.55 16 10 C -0.13 -6.32 5.87 -20.14 -0.12 -6.44 16 11 C -0.18 -7.96 9.62 22.71 0.22 -7.74 16 12 C -0.10 -4.17 10.01 22.17 0.22 -3.94 16 13 C -0.20 -9.55 9.78 22.77 0.22 -9.33 16 14 C 0.07 3.53 5.57 -21.32 -0.12 3.41 16 15 C -0.49 -26.20 9.05 23.47 0.21 -25.99 16 16 H 0.09 4.40 7.91 -2.91 -0.02 4.37 16 17 C 0.03 1.51 5.14 85.25 0.44 1.95 16 18 N -0.83 -44.89 10.97 21.83 0.24 -44.65 16 19 Si 0.98 38.54 29.59 68.60 2.03 40.57 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 C -0.12 -6.66 8.23 23.02 0.19 -6.47 16 24 C -0.17 -1.57 4.59 30.68 0.14 -1.43 16 25 C 0.06 0.55 6.61 72.01 0.48 1.03 16 26 O -0.39 -5.01 10.77 -148.98 -1.60 -6.62 16 27 C 0.06 0.70 6.61 72.01 0.48 1.18 16 28 C -0.14 -1.78 5.26 30.69 0.16 -1.61 16 29 H 0.13 1.24 6.51 -2.39 -0.02 1.23 16 30 H 0.05 1.12 7.16 -2.39 -0.02 1.10 16 31 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.12 4.84 7.59 -2.91 -0.02 4.81 16 34 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 36 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 37 H 0.11 6.44 5.77 -2.91 -0.02 6.42 16 38 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.10 0.62 6.74 -2.39 -0.02 0.60 16 40 H 0.04 0.48 7.39 -2.38 -0.02 0.46 16 41 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.04 0.56 7.39 -2.39 -0.02 0.54 16 43 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.26 381.70 5.27 -65.99 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.02 Total: 24.30 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.84 Total: -19.59 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.61 Total: -55.98 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -3.23 Total: -55.30 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -71.26 5.27 -65.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809081817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.445 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds