Wall clock time and date at job start Wed Apr 1 2020 03:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.47447 * 2 1 4 4 C 1.51159 * 110.53086 * 122.65385 * 2 1 3 5 5 C 1.37142 * 132.80561 * 298.62281 * 4 2 1 6 6 C 1.40190 * 119.63268 * 179.72620 * 5 4 2 7 7 C 1.46844 * 120.26998 * 180.29396 * 6 5 4 8 8 O 1.21294 * 120.00395 * 0.24481 * 7 6 5 9 9 C 1.50703 * 119.99496 * 180.24817 * 7 6 5 10 10 O 1.45204 * 109.46797 * 179.97438 * 9 7 6 11 11 C 1.34231 * 116.99919 * 180.02562 * 10 9 7 12 12 O 1.20829 * 120.00140 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47496 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47347 * 180.02562 * 14 13 11 16 16 H 1.07993 * 119.99885 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99834 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99886 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00339 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47075 * 89.99461 * 19 17 15 21 21 H 1.48495 * 109.47388 * 209.99842 * 19 17 15 22 22 H 1.48498 * 109.46919 * 330.00070 * 19 17 15 23 23 C 1.40055 * 119.45481 * 0.53981 * 6 5 4 24 24 C 1.36375 * 120.33901 * 359.45286 * 23 6 5 25 25 C 1.39299 * 106.28823 * 118.61702 * 4 2 1 26 26 N 1.38968 * 110.19025 * 0.02562 * 25 4 2 27 27 C 1.34332 * 112.41897 * 359.97438 * 26 25 4 28 28 O 1.21274 * 126.43410 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47156 * 297.35395 * 1 2 3 30 30 H 1.08998 * 109.46920 * 57.34775 * 1 2 3 31 31 H 1.08997 * 109.47409 * 177.34645 * 1 2 3 32 32 H 1.09007 * 109.47147 * 182.65119 * 3 2 1 33 33 H 1.09000 * 109.47322 * 302.65053 * 3 2 1 34 34 H 1.09000 * 109.46859 * 62.65085 * 3 2 1 35 35 H 1.08008 * 120.18371 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47269 * 299.99737 * 9 7 6 37 37 H 1.08997 * 109.47354 * 60.00001 * 9 7 6 38 38 H 1.09000 * 109.47056 * 299.99774 * 13 11 10 39 39 H 1.09004 * 109.47337 * 59.99331 * 13 11 10 40 40 H 1.09000 * 109.47163 * 300.00174 * 14 13 11 41 41 H 1.08999 * 109.47051 * 60.00066 * 14 13 11 42 42 H 0.97004 * 119.99681 * 180.02562 * 18 17 15 43 43 H 1.08002 * 119.83333 * 179.73457 * 23 6 5 44 44 H 1.08003 * 119.75721 * 180.29949 * 24 23 6 45 45 H 0.97003 * 123.79001 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0652 1.4333 0.0000 4 6 2.0601 -0.7638 1.1918 5 6 1.9356 -0.5823 2.5455 6 6 2.5528 -1.4825 3.4252 7 6 2.4232 -1.3051 4.8772 8 8 1.7764 -0.3794 5.3198 9 6 3.0940 -2.2733 5.8173 10 8 2.8187 -1.8852 7.1891 11 6 3.3483 -2.6500 8.1568 12 8 4.0194 -3.6121 7.8671 13 6 3.1060 -2.3087 9.6044 14 6 3.8147 -3.3312 10.4951 15 6 3.5718 -2.9902 11.9428 16 1 2.9717 -2.1305 12.2017 17 6 4.1149 -3.7765 12.9367 18 7 3.9026 -3.4792 14.2001 19 14 5.1524 -5.2640 12.4888 20 1 6.5763 -4.8582 12.3749 21 1 5.0156 -6.2990 13.5447 22 1 4.6901 -5.8171 11.1905 23 6 3.2984 -2.5493 2.9080 24 6 3.4145 -2.7188 1.5598 25 6 2.7969 -1.8283 0.6775 26 7 2.7760 -1.7991 -0.7117 27 6 2.0613 -0.7680 -1.1918 28 8 1.8760 -0.5022 -2.3605 29 1 -0.3633 0.4722 0.9127 30 1 -0.3633 0.5545 -0.8652 31 1 -0.3634 -1.0265 -0.0476 32 1 3.1540 1.4146 -0.0475 33 1 1.6729 1.9677 -0.8653 34 1 1.7499 1.9388 0.9128 35 1 1.3611 0.2468 2.9316 36 1 2.7099 -3.2777 5.6394 37 1 4.1703 -2.2601 5.6454 38 1 3.4961 -1.3125 9.8131 39 1 2.0355 -2.3297 9.8085 40 1 3.4243 -4.3272 10.2863 41 1 4.8852 -3.3105 10.2912 42 1 4.2850 -4.0322 14.8993 43 1 3.7800 -3.2440 3.5802 44 1 3.9877 -3.5476 1.1712 45 1 3.2270 -2.4501 -1.2718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:32 Heat of formation + Delta-G solvation = -129.941599 kcal Electronic energy + Delta-G solvation = -28459.684312 eV Core-core repulsion = 24214.388474 eV Total energy + Delta-G solvation = -4245.295838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48073 -40.52668 -39.66972 -38.55509 -36.32590 -36.19437 -35.34451 -33.65658 -31.55867 -31.11811 -30.97893 -28.58891 -27.98187 -26.34360 -25.65355 -24.12429 -22.34477 -21.92538 -20.66188 -20.06385 -19.85867 -18.46904 -17.80402 -17.49912 -16.89693 -16.69897 -16.50904 -16.25818 -16.14288 -15.43292 -15.02422 -14.94677 -14.84044 -14.48970 -14.22248 -13.98668 -13.87927 -13.65381 -13.55143 -13.28889 -12.93769 -12.81911 -12.70248 -12.57463 -12.45115 -12.29464 -11.96360 -11.50138 -11.43058 -11.31845 -11.05153 -10.71465 -10.63387 -10.37208 -10.27252 -10.14922 -9.91982 -9.72531 -9.64903 -9.27845 -8.72759 -8.57426 -6.08588 -4.08679 -0.02157 0.69628 1.54873 2.10206 2.27141 2.58004 2.58121 3.16284 3.32237 3.36022 3.39422 3.47458 3.54058 3.82760 4.09118 4.23584 4.38511 4.44187 4.47682 4.53507 4.65932 4.89412 4.90876 4.93815 5.04731 5.08820 5.13241 5.16332 5.25884 5.28123 5.34522 5.39124 5.50968 5.57400 5.57772 5.72011 5.84378 5.97258 5.99016 6.07149 6.24944 6.38756 6.66892 7.14872 7.20337 7.27491 7.27864 7.68373 8.08820 8.45234 8.94058 9.52814 11.03962 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.031987 B = 0.001685 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.151467 B =16610.183207 C =17281.625806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.053 4.053 3 C -0.128 4.128 4 C -0.149 4.149 5 C 0.003 3.997 6 C -0.185 4.185 7 C 0.400 3.600 8 O -0.425 6.425 9 C 0.017 3.983 10 O -0.344 6.344 11 C 0.459 3.541 12 O -0.511 6.511 13 C -0.095 4.095 14 C -0.002 4.002 15 C -0.528 4.528 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.900 5.900 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.035 4.035 24 C -0.148 4.148 25 C 0.178 3.822 26 N -0.658 5.658 27 C 0.537 3.463 28 O -0.490 6.490 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.026 0.974 41 H 0.021 0.979 42 H 0.264 0.736 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 5.058 -33.214 33.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.056 4.056 3 C -0.186 4.186 4 C -0.152 4.152 5 C -0.015 4.015 6 C -0.187 4.187 7 C 0.275 3.725 8 O -0.298 6.298 9 C -0.058 4.058 10 O -0.262 6.262 11 C 0.304 3.696 12 O -0.398 6.398 13 C -0.133 4.133 14 C -0.039 4.039 15 C -0.566 4.566 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.186 1.186 23 C -0.054 4.054 24 C -0.169 4.169 25 C 0.079 3.921 26 N -0.300 5.300 27 C 0.324 3.676 28 O -0.362 6.362 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.161 0.839 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.162 0.838 44 H 0.154 0.846 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.722 5.468 -33.604 34.249 hybrid contribution 1.094 -1.526 -0.537 1.953 sum -2.628 3.943 -34.142 34.469 Atomic orbital electron populations 1.21695 0.89868 1.03148 1.03876 1.20152 0.98630 0.96879 0.89939 1.21694 1.01422 0.91589 1.03873 1.19681 1.03507 0.97989 0.93977 1.20417 0.94209 0.97030 0.89875 1.20113 1.05247 0.99414 0.93929 1.21979 0.78326 0.84226 0.87928 1.90594 1.31328 1.28443 1.79400 1.23165 1.02280 0.99416 0.80895 1.86674 1.70251 1.54858 1.14393 1.24891 0.75465 0.79916 0.89354 1.90620 1.37092 1.28097 1.84002 1.21575 1.04488 1.03759 0.83438 1.19491 0.95839 0.94076 0.94514 1.21030 1.33498 1.13881 0.88159 0.90586 1.24959 0.95846 0.97497 0.94802 1.69907 1.45182 1.39456 0.99238 0.86801 0.81080 0.82997 0.78686 1.20175 1.21322 1.18619 1.20996 0.94241 0.95419 0.94754 1.20096 1.04018 1.00621 0.92150 1.18447 0.95376 0.95385 0.82896 1.43697 1.50865 1.29759 1.05692 1.20631 0.76975 0.80147 0.89823 1.90813 1.58114 1.69348 1.17967 0.90405 0.90807 0.91944 0.91942 0.90809 0.90404 0.83881 0.87830 0.87833 0.88090 0.88066 0.95578 0.96020 0.92588 0.83816 0.84565 0.74546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 8.64 37.16 0.32 -0.38 16 2 C -0.05 -0.33 1.01 -156.24 -0.16 -0.49 16 3 C -0.13 -0.70 8.64 37.16 0.32 -0.37 16 4 C -0.15 -0.98 4.99 -104.40 -0.52 -1.50 16 5 C 0.00 0.02 9.59 -39.25 -0.38 -0.35 16 6 C -0.18 -1.44 5.88 -105.00 -0.62 -2.05 16 7 C 0.40 4.22 7.19 -30.83 -0.22 4.00 16 8 O -0.42 -5.92 16.51 -14.11 -0.23 -6.15 16 9 C 0.02 0.19 4.55 36.01 0.16 0.36 16 10 O -0.34 -5.34 9.76 -45.91 -0.45 -5.79 16 11 C 0.46 8.17 7.96 36.00 0.29 8.45 16 12 O -0.51 -10.05 15.73 -18.75 -0.29 -10.35 16 13 C -0.10 -1.82 5.75 -27.89 -0.16 -1.98 16 14 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 15 C -0.53 -14.71 9.66 -34.44 -0.33 -15.04 16 16 H 0.08 2.22 7.99 -52.49 -0.42 1.81 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 19 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 23 C -0.04 -0.20 9.40 -39.57 -0.37 -0.57 16 24 C -0.15 -0.72 10.00 -39.69 -0.40 -1.12 16 25 C 0.18 1.06 7.11 -83.67 -0.59 0.47 16 26 N -0.66 -3.76 5.84 -9.65 -0.06 -3.82 16 27 C 0.54 4.21 7.37 -10.84 -0.08 4.13 16 28 O -0.49 -5.33 18.03 5.56 0.10 -5.23 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.14 1.01 7.66 -52.48 -0.40 0.60 16 36 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 39 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 40 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 41 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.14 0.56 7.04 -52.49 -0.37 0.19 16 44 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 45 H 0.42 1.47 8.96 -40.82 -0.37 1.10 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -35.78 388.58 -8.03 -43.81 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -6.13 Total: -4.24 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.93 Total: -4.64 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.72 Total: -30.38 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.88 Total: -27.51 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.78 -8.03 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.131 kcal (2) G-P(sol) polarization free energy of solvation -35.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds