Wall clock time and date at job start Wed Apr 1 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.47447 * 2 1 4 4 C 1.51159 * 110.53086 * 122.65385 * 2 1 3 5 5 C 1.37142 * 132.80561 * 298.62281 * 4 2 1 6 6 C 1.40190 * 119.63268 * 179.72620 * 5 4 2 7 7 C 1.46844 * 120.26998 * 180.29396 * 6 5 4 8 8 O 1.21294 * 120.00395 * 0.24481 * 7 6 5 9 9 C 1.50703 * 119.99496 * 180.24817 * 7 6 5 10 10 O 1.45204 * 109.46797 * 179.97438 * 9 7 6 11 11 C 1.34231 * 116.99919 * 180.02562 * 10 9 7 12 12 O 1.20829 * 120.00140 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47496 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47347 * 180.02562 * 14 13 11 16 16 H 1.07993 * 119.99885 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99834 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99886 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00339 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47075 * 89.99461 * 19 17 15 21 21 H 1.48495 * 109.47388 * 209.99842 * 19 17 15 22 22 H 1.48498 * 109.46919 * 330.00070 * 19 17 15 23 23 C 1.40055 * 119.45481 * 0.53981 * 6 5 4 24 24 C 1.36375 * 120.33901 * 359.45286 * 23 6 5 25 25 C 1.39299 * 106.28823 * 118.61702 * 4 2 1 26 26 N 1.38968 * 110.19025 * 0.02562 * 25 4 2 27 27 C 1.34332 * 112.41897 * 359.97438 * 26 25 4 28 28 O 1.21274 * 126.43410 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47156 * 297.35395 * 1 2 3 30 30 H 1.08998 * 109.46920 * 57.34775 * 1 2 3 31 31 H 1.08997 * 109.47409 * 177.34645 * 1 2 3 32 32 H 1.09007 * 109.47147 * 182.65119 * 3 2 1 33 33 H 1.09000 * 109.47322 * 302.65053 * 3 2 1 34 34 H 1.09000 * 109.46859 * 62.65085 * 3 2 1 35 35 H 1.08008 * 120.18371 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47269 * 299.99737 * 9 7 6 37 37 H 1.08997 * 109.47354 * 60.00001 * 9 7 6 38 38 H 1.09000 * 109.47056 * 299.99774 * 13 11 10 39 39 H 1.09004 * 109.47337 * 59.99331 * 13 11 10 40 40 H 1.09000 * 109.47163 * 300.00174 * 14 13 11 41 41 H 1.08999 * 109.47051 * 60.00066 * 14 13 11 42 42 H 0.97004 * 119.99681 * 180.02562 * 18 17 15 43 43 H 1.08002 * 119.83333 * 179.73457 * 23 6 5 44 44 H 1.08003 * 119.75721 * 180.29949 * 24 23 6 45 45 H 0.97003 * 123.79001 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0652 1.4333 0.0000 4 6 2.0601 -0.7638 1.1918 5 6 1.9356 -0.5823 2.5455 6 6 2.5528 -1.4825 3.4252 7 6 2.4232 -1.3051 4.8772 8 8 1.7764 -0.3794 5.3198 9 6 3.0940 -2.2733 5.8173 10 8 2.8187 -1.8852 7.1891 11 6 3.3483 -2.6500 8.1568 12 8 4.0194 -3.6121 7.8671 13 6 3.1060 -2.3087 9.6044 14 6 3.8147 -3.3312 10.4951 15 6 3.5718 -2.9902 11.9428 16 1 2.9717 -2.1305 12.2017 17 6 4.1149 -3.7765 12.9367 18 7 3.9026 -3.4792 14.2001 19 14 5.1524 -5.2640 12.4888 20 1 6.5763 -4.8582 12.3749 21 1 5.0156 -6.2990 13.5447 22 1 4.6901 -5.8171 11.1905 23 6 3.2984 -2.5493 2.9080 24 6 3.4145 -2.7188 1.5598 25 6 2.7969 -1.8283 0.6775 26 7 2.7760 -1.7991 -0.7117 27 6 2.0613 -0.7680 -1.1918 28 8 1.8760 -0.5022 -2.3605 29 1 -0.3633 0.4722 0.9127 30 1 -0.3633 0.5545 -0.8652 31 1 -0.3634 -1.0265 -0.0476 32 1 3.1540 1.4146 -0.0475 33 1 1.6729 1.9677 -0.8653 34 1 1.7499 1.9388 0.9128 35 1 1.3611 0.2468 2.9316 36 1 2.7099 -3.2777 5.6394 37 1 4.1703 -2.2601 5.6454 38 1 3.4961 -1.3125 9.8131 39 1 2.0355 -2.3297 9.8085 40 1 3.4243 -4.3272 10.2863 41 1 4.8852 -3.3105 10.2912 42 1 4.2850 -4.0322 14.8993 43 1 3.7800 -3.2440 3.5802 44 1 3.9877 -3.5476 1.1712 45 1 3.2270 -2.4501 -1.2718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:31 Heat of formation + Delta-G solvation = -151.437211 kcal Electronic energy + Delta-G solvation = -28460.616432 eV Core-core repulsion = 24214.388474 eV Total energy + Delta-G solvation = -4246.227957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.00746 -41.68495 -40.59634 -39.27766 -37.53593 -36.88074 -35.82151 -35.60738 -33.44707 -31.81236 -31.57533 -29.50880 -28.41488 -28.02197 -26.16844 -24.88552 -23.58398 -22.83469 -21.44992 -21.29889 -20.62767 -19.38518 -18.97244 -18.46958 -18.18735 -17.85217 -17.28430 -17.27169 -16.82583 -16.29970 -16.13421 -16.11075 -15.71545 -15.39025 -14.99295 -14.98362 -14.89644 -14.71109 -14.35310 -14.14760 -13.87332 -13.84324 -13.70477 -13.43813 -13.29148 -13.12718 -12.92637 -12.90131 -12.41396 -12.22856 -12.01779 -12.00520 -11.84429 -11.77557 -11.75670 -11.53043 -11.39844 -11.23806 -10.85565 -10.76370 -10.10589 -9.26186 -8.29164 -6.33966 -0.61230 0.23914 0.90209 1.19555 1.37826 1.39571 1.46072 1.47742 1.53146 1.78947 2.37298 2.64533 2.71983 2.95578 3.06294 3.16020 3.62640 3.74723 3.87554 3.92053 3.96615 4.06556 4.10660 4.15527 4.19164 4.34543 4.41183 4.43531 4.64368 4.64507 4.69696 4.72905 4.84821 4.89653 4.95492 5.03873 5.11699 5.15062 5.18286 5.25963 5.33978 5.34582 5.39599 5.60819 5.61076 5.76465 6.23650 6.36507 6.70248 6.75027 6.79246 7.31146 8.86470 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.031987 B = 0.001685 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.151467 B =16610.183207 C =17281.625806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.054 4.054 3 C -0.127 4.127 4 C -0.153 4.153 5 C 0.000 4.000 6 C -0.196 4.196 7 C 0.410 3.590 8 O -0.470 6.470 9 C 0.006 3.994 10 O -0.351 6.351 11 C 0.473 3.527 12 O -0.530 6.530 13 C -0.095 4.095 14 C 0.003 3.997 15 C -0.534 4.534 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.944 5.944 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.253 1.253 23 C -0.028 4.028 24 C -0.138 4.138 25 C 0.176 3.824 26 N -0.648 5.648 27 C 0.534 3.466 28 O -0.526 6.526 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.268 0.732 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 3.564 -35.142 35.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.057 4.057 3 C -0.185 4.185 4 C -0.156 4.156 5 C -0.019 4.019 6 C -0.199 4.199 7 C 0.288 3.712 8 O -0.346 6.346 9 C -0.068 4.068 10 O -0.268 6.268 11 C 0.318 3.682 12 O -0.420 6.420 13 C -0.132 4.132 14 C -0.034 4.034 15 C -0.572 4.572 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.584 5.584 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.177 1.177 23 C -0.046 4.046 24 C -0.159 4.159 25 C 0.078 3.922 26 N -0.290 5.290 27 C 0.322 3.678 28 O -0.401 6.401 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.157 0.843 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.184 0.816 44 H 0.184 0.816 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.630 3.965 -35.552 35.868 hybrid contribution 0.716 -1.002 -0.017 1.232 sum -1.914 2.962 -35.568 35.743 Atomic orbital electron populations 1.21703 0.89325 1.03074 1.04390 1.20188 0.99102 0.97137 0.89266 1.21703 1.01187 0.91204 1.04389 1.19652 1.03862 0.98432 0.93680 1.20397 0.94326 0.97064 0.90115 1.19924 1.06940 1.00857 0.92138 1.22200 0.76921 0.83058 0.88995 1.90591 1.33566 1.30229 1.80172 1.23646 1.04052 1.00716 0.78337 1.86612 1.69686 1.54313 1.16196 1.24243 0.75120 0.79591 0.89203 1.90609 1.38086 1.28920 1.84350 1.21348 1.04610 1.02831 0.84422 1.19325 0.96183 0.95077 0.92858 1.21366 1.32451 1.12787 0.90602 0.93415 1.25860 0.97334 1.00729 0.94655 1.70039 1.46840 1.41112 1.00448 0.85767 0.79550 0.79300 0.78752 1.19201 1.20698 1.17668 1.21241 0.93215 0.94707 0.95452 1.20397 1.03209 1.00756 0.91536 1.18639 0.95249 0.95450 0.82913 1.43607 1.50152 1.29385 1.05851 1.20848 0.76813 0.80512 0.89600 1.90792 1.59592 1.70404 1.19356 0.89440 0.90813 0.92256 0.92246 0.90816 0.89434 0.84276 0.85600 0.85586 0.87095 0.87121 0.96044 0.96159 0.92353 0.81577 0.81555 0.73250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.64 71.98 0.62 -0.68 16 2 C -0.05 -0.63 1.01 -53.30 -0.05 -0.69 16 3 C -0.13 -1.30 8.64 71.98 0.62 -0.68 16 4 C -0.15 -1.79 4.99 -19.72 -0.10 -1.88 16 5 C 0.00 0.00 9.59 22.49 0.22 0.21 16 6 C -0.20 -2.64 5.88 -20.11 -0.12 -2.76 16 7 C 0.41 8.01 7.19 27.94 0.20 8.21 16 8 O -0.47 -12.91 16.51 15.73 0.26 -12.65 16 9 C 0.01 0.12 4.55 71.24 0.32 0.45 16 10 O -0.35 -10.24 9.76 -45.07 -0.44 -10.68 16 11 C 0.47 15.93 7.96 71.23 0.57 16.50 16 12 O -0.53 -19.58 15.73 21.95 0.35 -19.24 16 13 C -0.09 -3.52 5.75 29.84 0.17 -3.35 16 14 C 0.00 0.15 3.33 29.85 0.10 0.25 16 15 C -0.53 -30.00 9.66 25.60 0.25 -29.75 16 16 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 17 C 0.01 0.69 5.47 84.65 0.46 1.15 16 18 N -0.94 -58.20 13.96 21.45 0.30 -57.90 16 19 Si 0.94 44.45 27.47 68.60 1.88 46.33 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 23 C -0.03 -0.21 9.40 22.28 0.21 -0.01 16 24 C -0.14 -0.84 10.00 22.20 0.22 -0.62 16 25 C 0.18 1.67 7.11 38.63 0.27 1.95 16 26 N -0.65 -6.21 5.84 -303.09 -1.77 -7.98 16 27 C 0.53 7.93 7.37 87.95 0.65 8.58 16 28 O -0.53 -11.38 18.03 -3.01 -0.05 -11.43 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.14 1.91 7.66 -2.91 -0.02 1.89 16 36 H 0.13 1.94 8.08 -2.39 -0.02 1.92 16 37 H 0.13 1.94 8.08 -2.39 -0.02 1.92 16 38 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 39 H 0.11 3.88 8.14 -2.38 -0.02 3.86 16 40 H 0.02 1.01 7.16 -2.39 -0.02 1.00 16 41 H 0.02 0.94 7.53 -2.39 -0.02 0.93 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.17 0.54 7.04 -2.91 -0.02 0.52 16 44 H 0.17 0.04 8.06 -2.91 -0.02 0.02 16 45 H 0.43 2.12 8.96 -92.71 -0.83 1.29 16 Total: -1.00 -77.67 388.58 5.29 -72.39 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 0.14 Total: 4.28 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 4.62 Total: -3.12 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -1.47 Total: -65.88 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: 0.11 Total: -54.01 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -77.67 5.29 -72.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.052 kcal (2) G-P(sol) polarization free energy of solvation -77.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds