Wall clock time and date at job start Wed Apr 1 2020 04:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47409 * 2 1 4 4 C 1.53008 * 109.47086 * 240.00085 * 2 1 3 5 5 C 1.50704 * 109.47004 * 120.00596 * 2 1 3 6 6 O 1.21278 * 119.99477 * 353.39819 * 5 2 1 7 7 N 1.34776 * 119.99858 * 173.40440 * 5 2 1 8 8 C 1.47601 * 122.42933 * 354.66135 * 7 5 2 9 9 S 1.84076 * 102.80591 * 155.11977 * 8 7 5 10 10 C 1.84832 * 93.70361 * 33.43849 * 9 8 7 11 11 C 1.45496 * 122.42817 * 174.68932 * 7 5 2 12 12 H 1.09008 * 108.75637 * 301.86258 * 11 7 5 13 13 C 1.50702 * 108.75573 * 60.08255 * 11 7 5 14 14 O 1.20822 * 119.99760 * 359.97438 * 13 11 7 15 15 O 1.34233 * 120.00036 * 179.97438 * 13 11 7 16 16 C 1.45199 * 116.99746 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47093 * 180.02562 * 16 15 13 18 18 O 1.42905 * 109.47077 * 64.99750 * 17 16 15 19 19 C 1.42904 * 113.99672 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.46878 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00035 * 0.02562 * 20 19 18 22 22 C 1.37872 * 119.99965 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00110 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99983 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46774 * 60.00435 * 24 22 20 26 26 H 1.48497 * 109.47004 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46878 * 300.00374 * 24 22 20 28 28 H 1.09007 * 109.47380 * 299.99868 * 1 2 3 29 29 H 1.09007 * 109.46953 * 59.99644 * 1 2 3 30 30 H 1.09002 * 109.47554 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47292 * 171.71523 * 3 2 1 32 32 H 1.08999 * 109.47237 * 291.71703 * 3 2 1 33 33 H 1.09000 * 109.47192 * 51.71570 * 3 2 1 34 34 H 1.09001 * 109.46646 * 300.00453 * 4 2 1 35 35 H 1.09000 * 109.46925 * 59.99621 * 4 2 1 36 36 H 1.08991 * 109.47070 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.77939 * 273.49634 * 8 7 5 38 38 H 1.08998 * 110.77720 * 36.74385 * 8 7 5 39 39 H 1.09005 * 111.04884 * 209.73785 * 10 9 8 40 40 H 1.09002 * 111.06965 * 85.79556 * 10 9 8 41 41 H 1.09008 * 109.47059 * 300.00187 * 16 15 13 42 42 H 1.08993 * 109.47425 * 60.00110 * 16 15 13 43 43 H 1.09001 * 109.47478 * 185.00081 * 17 16 15 44 44 H 1.08998 * 109.47175 * 305.00126 * 17 16 15 45 45 H 1.09001 * 109.47400 * 300.00067 * 19 18 17 46 46 H 1.08995 * 109.47416 * 60.00413 * 19 18 17 47 47 H 0.97000 * 119.99990 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7106 1.2304 6 8 1.2506 -1.0658 2.0870 7 7 3.3501 -0.9511 1.3789 8 6 4.3342 -0.6468 0.3218 9 16 5.8968 -0.4281 1.2699 10 6 5.4421 -1.6893 2.5421 11 6 3.9056 -1.5301 2.5926 12 1 3.6495 -0.8887 3.4360 13 6 3.2849 -2.8859 2.8107 14 8 2.4675 -3.3091 2.0281 15 8 3.6402 -3.6234 3.8746 16 6 3.0021 -4.9194 4.0209 17 6 3.5289 -5.6079 5.2816 18 8 3.1339 -4.8597 6.4333 19 6 3.5782 -5.4198 7.6707 20 6 3.1073 -4.5548 8.8114 21 1 2.5265 -3.6665 8.6115 22 6 3.4171 -4.8981 10.1103 23 7 4.1239 -5.9801 10.3538 24 14 2.8340 -3.8256 11.5242 25 1 1.3505 -3.7580 11.5151 26 1 3.2955 -4.4076 12.8100 27 1 3.3928 -2.4583 11.3714 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1199 1.4460 0.1481 32 1 1.8026 1.9117 -0.9547 33 1 1.5609 1.9972 0.8067 34 1 1.6765 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 4.4197 -1.4782 -0.3779 38 1 4.0679 0.2714 -0.2017 39 1 5.8922 -1.4527 3.5063 40 1 5.7215 -2.6917 2.2176 41 1 1.9234 -4.7860 4.1040 42 1 3.2259 -5.5351 3.1498 43 1 3.1178 -6.6154 5.3443 44 1 4.6167 -5.6614 5.2387 45 1 3.1684 -6.4236 7.7831 46 1 4.6670 -5.4691 7.6771 47 1 4.3422 -6.2214 11.2676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815207984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:22 Heat of formation + Delta-G solvation = -145.898746 kcal Electronic energy + Delta-G solvation = -29007.413440 eV Core-core repulsion = 24896.869600 eV Total energy + Delta-G solvation = -4110.543840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35159 -39.97827 -37.29738 -36.59290 -36.24826 -35.82081 -32.78727 -31.96163 -30.00266 -28.31912 -27.81819 -27.28298 -26.93277 -25.26183 -23.43471 -22.39142 -21.87872 -20.75201 -19.49936 -18.10469 -17.73471 -17.04631 -16.73018 -16.41663 -16.33447 -15.74511 -15.42068 -15.16484 -14.95588 -14.83514 -14.50731 -14.47784 -14.20884 -14.01915 -13.54669 -13.27483 -13.04883 -12.87078 -12.64460 -12.58464 -12.48493 -12.28394 -12.13153 -12.05913 -11.96843 -11.45058 -11.41995 -11.35323 -11.03283 -10.93717 -10.83251 -10.75360 -10.41468 -10.34258 -10.06483 -9.91967 -9.28097 -9.14464 -8.87796 -8.37234 -8.21890 -6.11986 -4.13703 1.08597 1.42701 1.97763 2.16167 2.37278 2.84648 3.32867 3.35119 3.39537 3.66957 4.00036 4.27372 4.32001 4.36550 4.38344 4.46871 4.60006 4.67345 4.72816 4.78957 5.02706 5.05895 5.12977 5.18298 5.19572 5.24542 5.24559 5.38483 5.46142 5.50657 5.51153 5.58207 5.69259 5.80223 5.83876 5.91086 5.98816 6.05850 6.53182 6.74063 7.04053 7.38766 7.70951 7.78086 7.85404 8.12136 8.51789 8.98737 9.51120 10.99496 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.002415 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.965146 B =11590.342702 C =11917.785658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.160 4.160 5 C 0.542 3.458 6 O -0.501 6.501 7 N -0.604 5.604 8 C 0.143 3.857 9 S -0.263 6.263 10 C -0.055 4.055 11 C 0.143 3.857 12 H 0.128 0.872 13 C 0.453 3.547 14 O -0.489 6.489 15 O -0.338 6.338 16 C 0.077 3.923 17 C 0.063 3.937 18 O -0.390 6.390 19 C 0.195 3.805 20 C -0.516 4.516 21 H 0.066 0.934 22 C 0.057 3.943 23 N -0.899 5.899 24 Si 0.909 3.091 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.006 0.994 46 H 0.007 0.993 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 12.428 -26.996 29.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.205 4.205 4 C -0.218 4.218 5 C 0.329 3.671 6 O -0.373 6.373 7 N -0.343 5.343 8 C -0.090 4.090 9 S -0.036 6.036 10 C -0.203 4.203 11 C 0.035 3.965 12 H 0.146 0.854 13 C 0.292 3.708 14 O -0.376 6.376 15 O -0.254 6.254 16 C 0.003 3.997 17 C -0.015 4.015 18 O -0.310 6.310 19 C 0.121 3.879 20 C -0.554 4.554 21 H 0.085 0.915 22 C -0.144 4.144 23 N -0.538 5.538 24 Si 0.736 3.264 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.024 0.976 46 H 0.025 0.975 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.892 12.866 -26.744 29.738 hybrid contribution -1.036 -0.794 0.957 1.619 sum 0.856 12.072 -25.787 28.485 Atomic orbital electron populations 1.21680 0.91304 1.03200 1.02334 1.20768 0.98458 0.96179 0.92914 1.22036 1.01370 0.93594 1.03523 1.22320 1.02084 1.01322 0.96067 1.20540 0.79809 0.78246 0.88476 1.90776 1.53718 1.49375 1.43434 1.48239 1.07402 1.63816 1.14794 1.24938 0.86581 1.05643 0.91813 1.88610 1.27287 1.54836 1.32887 1.24561 0.92212 1.01088 1.02455 1.20774 0.93254 0.91494 0.90928 0.85414 1.23543 0.80601 0.87147 0.79546 1.90652 1.30602 1.71108 1.45204 1.86561 1.63407 1.31145 1.44247 1.23231 0.98486 0.80313 0.97674 1.22314 0.98910 0.94161 0.86129 1.87937 1.77489 1.51164 1.14397 1.20232 0.94210 0.94070 0.79406 1.21016 1.34361 1.10225 0.89779 0.91541 1.24944 0.95135 0.95554 0.98816 1.69951 1.38479 1.24613 1.20802 0.86383 0.79223 0.80361 0.80456 1.19985 1.21139 1.19951 0.91580 0.91746 0.91765 0.91720 0.90834 0.91423 0.91541 0.90961 0.91120 0.88084 0.85034 0.84066 0.87242 0.90407 0.90535 0.91910 0.93185 0.97632 0.97489 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 7.78 37.16 0.29 -0.82 16 2 C -0.08 -0.66 0.75 -155.66 -0.12 -0.78 16 3 C -0.15 -0.88 8.22 37.15 0.31 -0.57 16 4 C -0.16 -0.99 8.07 37.16 0.30 -0.69 16 5 C 0.54 6.66 5.65 -10.98 -0.06 6.60 16 6 O -0.50 -8.52 14.35 -15.49 -0.22 -8.74 16 7 N -0.60 -6.39 2.76 -169.16 -0.47 -6.86 16 8 C 0.14 1.02 5.23 60.45 0.32 1.34 16 9 S -0.26 -2.18 23.47 -107.50 -2.52 -4.70 16 10 C -0.05 -0.48 6.94 37.97 0.26 -0.22 16 11 C 0.14 1.68 3.00 -68.80 -0.21 1.47 16 12 H 0.13 1.54 8.14 -51.92 -0.42 1.12 16 13 C 0.45 6.94 6.53 36.01 0.24 7.18 16 14 O -0.49 -8.58 14.16 -25.79 -0.37 -8.94 16 15 O -0.34 -5.62 10.04 -42.03 -0.42 -6.04 16 16 C 0.08 1.25 5.84 37.16 0.22 1.46 16 17 C 0.06 1.15 6.33 37.16 0.24 1.38 16 18 O -0.39 -9.56 10.30 -38.80 -0.40 -9.96 16 19 C 0.19 5.36 5.69 36.01 0.20 5.57 16 20 C -0.52 -15.35 9.43 -34.44 -0.32 -15.68 16 21 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 24 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.35 5.31 -51.93 -0.28 0.07 16 32 H 0.07 0.30 8.13 -51.93 -0.42 -0.13 16 33 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.34 3.78 -51.93 -0.20 0.15 16 37 H 0.10 0.62 7.24 -51.93 -0.38 0.25 16 38 H 0.13 0.67 3.97 -51.93 -0.21 0.46 16 39 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.11 0.91 7.85 -51.93 -0.41 0.50 16 41 H 0.08 1.36 8.13 -51.92 -0.42 0.94 16 42 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 46 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -36.43 390.40 -8.58 -45.02 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -7.34 Total: -4.27 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 1.56 Total: 7.79 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.27 Total: -33.05 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.41 Total: -33.69 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.52 Total: -4.70 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.43 -8.58 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815207984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.883 kcal (2) G-P(sol) polarization free energy of solvation -36.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds