Wall clock time and date at job start Wed Apr 1 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47409 * 2 1 4 4 C 1.53008 * 109.47086 * 240.00085 * 2 1 3 5 5 C 1.50704 * 109.47004 * 120.00596 * 2 1 3 6 6 O 1.21278 * 119.99477 * 353.39819 * 5 2 1 7 7 N 1.34776 * 119.99858 * 173.40440 * 5 2 1 8 8 C 1.47601 * 122.42933 * 354.66135 * 7 5 2 9 9 S 1.84076 * 102.80591 * 155.11977 * 8 7 5 10 10 C 1.84832 * 93.70361 * 33.43849 * 9 8 7 11 11 C 1.45496 * 122.42817 * 174.68932 * 7 5 2 12 12 H 1.09008 * 108.75637 * 301.86258 * 11 7 5 13 13 C 1.50702 * 108.75573 * 60.08255 * 11 7 5 14 14 O 1.20822 * 119.99760 * 359.97438 * 13 11 7 15 15 O 1.34233 * 120.00036 * 179.97438 * 13 11 7 16 16 C 1.45199 * 116.99746 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47093 * 180.02562 * 16 15 13 18 18 O 1.42905 * 109.47077 * 64.99750 * 17 16 15 19 19 C 1.42904 * 113.99672 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.46878 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00035 * 0.02562 * 20 19 18 22 22 C 1.37872 * 119.99965 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00110 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99983 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46774 * 60.00435 * 24 22 20 26 26 H 1.48497 * 109.47004 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46878 * 300.00374 * 24 22 20 28 28 H 1.09007 * 109.47380 * 299.99868 * 1 2 3 29 29 H 1.09007 * 109.46953 * 59.99644 * 1 2 3 30 30 H 1.09002 * 109.47554 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47292 * 171.71523 * 3 2 1 32 32 H 1.08999 * 109.47237 * 291.71703 * 3 2 1 33 33 H 1.09000 * 109.47192 * 51.71570 * 3 2 1 34 34 H 1.09001 * 109.46646 * 300.00453 * 4 2 1 35 35 H 1.09000 * 109.46925 * 59.99621 * 4 2 1 36 36 H 1.08991 * 109.47070 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.77939 * 273.49634 * 8 7 5 38 38 H 1.08998 * 110.77720 * 36.74385 * 8 7 5 39 39 H 1.09005 * 111.04884 * 209.73785 * 10 9 8 40 40 H 1.09002 * 111.06965 * 85.79556 * 10 9 8 41 41 H 1.09008 * 109.47059 * 300.00187 * 16 15 13 42 42 H 1.08993 * 109.47425 * 60.00110 * 16 15 13 43 43 H 1.09001 * 109.47478 * 185.00081 * 17 16 15 44 44 H 1.08998 * 109.47175 * 305.00126 * 17 16 15 45 45 H 1.09001 * 109.47400 * 300.00067 * 19 18 17 46 46 H 1.08995 * 109.47416 * 60.00413 * 19 18 17 47 47 H 0.97000 * 119.99990 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7106 1.2304 6 8 1.2506 -1.0658 2.0870 7 7 3.3501 -0.9511 1.3789 8 6 4.3342 -0.6468 0.3218 9 16 5.8968 -0.4281 1.2699 10 6 5.4421 -1.6893 2.5421 11 6 3.9056 -1.5301 2.5926 12 1 3.6495 -0.8887 3.4360 13 6 3.2849 -2.8859 2.8107 14 8 2.4675 -3.3091 2.0281 15 8 3.6402 -3.6234 3.8746 16 6 3.0021 -4.9194 4.0209 17 6 3.5289 -5.6079 5.2816 18 8 3.1339 -4.8597 6.4333 19 6 3.5782 -5.4198 7.6707 20 6 3.1073 -4.5548 8.8114 21 1 2.5265 -3.6665 8.6115 22 6 3.4171 -4.8981 10.1103 23 7 4.1239 -5.9801 10.3538 24 14 2.8340 -3.8256 11.5242 25 1 1.3505 -3.7580 11.5151 26 1 3.2955 -4.4076 12.8100 27 1 3.3928 -2.4583 11.3714 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1199 1.4460 0.1481 32 1 1.8026 1.9117 -0.9547 33 1 1.5609 1.9972 0.8067 34 1 1.6765 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 4.4197 -1.4782 -0.3779 38 1 4.0679 0.2714 -0.2017 39 1 5.8922 -1.4527 3.5063 40 1 5.7215 -2.6917 2.2176 41 1 1.9234 -4.7860 4.1040 42 1 3.2259 -5.5351 3.1498 43 1 3.1178 -6.6154 5.3443 44 1 4.6167 -5.6614 5.2387 45 1 3.1684 -6.4236 7.7831 46 1 4.6670 -5.4691 7.6771 47 1 4.3422 -6.2214 11.2676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815207984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:21 Heat of formation + Delta-G solvation = -169.001090 kcal Electronic energy + Delta-G solvation = -29008.415233 eV Core-core repulsion = 24896.869600 eV Total energy + Delta-G solvation = -4111.545633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.35675 -41.09197 -38.84429 -37.82824 -37.35536 -36.82311 -34.97460 -32.88216 -31.51259 -29.09662 -28.98681 -28.31127 -27.90842 -26.17707 -24.69484 -24.37483 -23.16999 -21.72769 -20.36565 -19.22715 -18.77159 -18.52828 -18.15233 -17.69154 -17.60841 -17.03889 -16.61374 -16.42937 -16.27785 -16.01503 -15.72514 -15.37486 -15.29583 -14.90498 -14.83366 -14.42316 -14.16212 -14.00802 -13.74244 -13.56741 -13.28144 -13.18870 -13.13095 -12.99701 -12.94720 -12.88340 -12.72696 -12.63820 -12.51530 -12.30730 -12.00393 -11.98498 -11.82463 -11.67276 -11.35672 -11.31655 -10.92358 -10.82132 -10.30754 -10.18224 -9.01299 -8.34457 -6.46689 0.42579 0.70516 0.98209 1.05498 1.38436 1.42862 1.48673 1.51363 1.79190 2.32546 2.87666 2.99288 3.01282 3.25260 3.37019 3.68263 3.74796 3.81561 3.85564 3.88592 4.04068 4.07487 4.15041 4.28872 4.33014 4.34039 4.45082 4.58825 4.63106 4.65883 4.74550 4.79418 4.82357 4.88715 4.91015 4.97435 5.15086 5.17101 5.26581 5.28417 5.31607 5.51668 5.89937 5.92727 6.46142 6.52702 6.76816 6.90359 7.24831 8.77422 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.002415 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.965146 B =11590.342702 C =11917.785658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C -0.143 4.143 4 C -0.156 4.156 5 C 0.533 3.467 6 O -0.561 6.561 7 N -0.603 5.603 8 C 0.141 3.859 9 S -0.256 6.256 10 C -0.051 4.051 11 C 0.143 3.857 12 H 0.120 0.880 13 C 0.451 3.549 14 O -0.515 6.515 15 O -0.351 6.351 16 C 0.081 3.919 17 C 0.056 3.944 18 O -0.411 6.411 19 C 0.209 3.791 20 C -0.553 4.553 21 H 0.057 0.943 22 C 0.010 3.990 23 N -0.927 5.927 24 Si 0.980 3.020 25 H -0.268 1.268 26 H -0.272 1.272 27 H -0.265 1.265 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.064 0.936 45 H -0.009 1.009 46 H -0.007 1.007 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.648 14.077 -28.624 32.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.081 4.081 3 C -0.200 4.200 4 C -0.214 4.214 5 C 0.322 3.678 6 O -0.438 6.438 7 N -0.340 5.340 8 C -0.090 4.090 9 S -0.029 6.029 10 C -0.200 4.200 11 C 0.035 3.965 12 H 0.137 0.863 13 C 0.291 3.709 14 O -0.402 6.402 15 O -0.266 6.266 16 C 0.007 3.993 17 C -0.021 4.021 18 O -0.332 6.332 19 C 0.134 3.866 20 C -0.591 4.591 21 H 0.075 0.925 22 C -0.189 4.189 23 N -0.566 5.566 24 Si 0.803 3.197 25 H -0.193 1.193 26 H -0.196 1.196 27 H -0.190 1.190 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.176 0.824 39 H 0.169 0.831 40 H 0.135 0.865 41 H 0.078 0.922 42 H 0.128 0.872 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.009 0.991 46 H 0.011 0.989 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.937 14.521 -28.419 32.049 hybrid contribution -1.339 -1.343 1.374 2.342 sum 1.598 13.178 -27.044 30.127 Atomic orbital electron populations 1.21683 0.92055 1.01762 1.02914 1.20880 0.97914 0.97500 0.91773 1.22043 1.01633 0.91566 1.04775 1.22334 1.03066 1.00142 0.95818 1.21472 0.79809 0.77473 0.89002 1.90743 1.55333 1.51965 1.45718 1.48359 1.07675 1.62762 1.15183 1.25286 0.85093 1.07629 0.90994 1.88621 1.27487 1.54358 1.32437 1.24549 0.89856 1.02001 1.03586 1.20895 0.94974 0.89035 0.91579 0.86281 1.24284 0.80106 0.87917 0.78578 1.90632 1.31701 1.71905 1.45997 1.86560 1.63550 1.31425 1.45115 1.23175 0.97281 0.80975 0.97822 1.22635 1.00039 0.94823 0.84600 1.87882 1.77855 1.52424 1.14997 1.19866 0.93023 0.93077 0.80598 1.21349 1.35538 1.10745 0.91433 0.92468 1.25909 0.94697 0.96873 1.01442 1.70043 1.38778 1.25870 1.21945 0.85278 0.78911 0.78604 0.76900 1.19314 1.19640 1.19008 0.93471 0.88583 0.94232 0.90829 0.87844 0.92609 0.93601 0.88105 0.89503 0.86407 0.82416 0.83147 0.86530 0.92209 0.87169 0.90072 0.91803 0.99079 0.98883 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.78 71.98 0.56 -1.63 16 2 C -0.08 -1.18 0.75 -52.93 -0.04 -1.22 16 3 C -0.14 -1.32 8.22 71.98 0.59 -0.73 16 4 C -0.16 -1.53 8.07 71.98 0.58 -0.95 16 5 C 0.53 13.26 5.65 87.66 0.50 13.75 16 6 O -0.56 -20.27 14.35 17.10 0.25 -20.02 16 7 N -0.60 -12.38 2.76 -807.49 -2.23 -14.61 16 8 C 0.14 1.67 5.23 127.56 0.67 2.34 16 9 S -0.26 -3.68 23.47 -56.49 -1.33 -5.00 16 10 C -0.05 -0.86 6.94 72.51 0.50 -0.36 16 11 C 0.14 3.38 3.00 44.96 0.13 3.52 16 12 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 13 C 0.45 14.16 6.53 71.24 0.47 14.63 16 14 O -0.51 -18.57 14.16 28.71 0.41 -18.17 16 15 O -0.35 -11.89 10.04 -48.80 -0.49 -12.38 16 16 C 0.08 2.67 5.84 71.98 0.42 3.09 16 17 C 0.06 2.06 6.33 71.98 0.46 2.52 16 18 O -0.41 -20.75 10.30 -145.57 -1.50 -22.25 16 19 C 0.21 11.86 5.69 71.24 0.41 12.26 16 20 C -0.55 -33.67 9.43 25.60 0.24 -33.42 16 21 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 22 C 0.01 0.57 5.46 84.65 0.46 1.03 16 23 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 24 Si 0.98 45.04 29.54 68.60 2.03 47.07 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 H 0.05 0.97 8.03 -2.38 -0.02 0.95 16 29 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.54 5.31 -2.39 -0.01 0.53 16 32 H 0.10 0.38 8.13 -2.39 -0.02 0.37 16 33 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.54 3.78 -2.39 -0.01 0.53 16 37 H 0.12 1.09 7.24 -2.39 -0.02 1.07 16 38 H 0.16 1.03 3.97 -2.39 -0.01 1.02 16 39 H 0.15 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.12 1.80 7.85 -2.39 -0.02 1.78 16 41 H 0.06 2.18 8.13 -2.38 -0.02 2.16 16 42 H 0.11 2.88 8.13 -2.39 -0.02 2.86 16 43 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 47 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -82.03 390.40 4.33 -77.69 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.97 Total: 8.37 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 5.94 Total: 14.81 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.95 Total: -70.11 kcal Atomic # 8 Polarization: -71.49 SS G_CDS: -1.34 Total: -72.82 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.33 Total: -5.00 kcal Total: -82.03 4.33 -77.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815207984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.307 kcal (2) G-P(sol) polarization free energy of solvation -82.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds