Wall clock time and date at job start Wed Apr 1 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00226 * 2 1 4 4 H 1.48499 * 109.46884 * 269.99710 * 3 2 1 5 5 H 1.48501 * 109.46997 * 29.99604 * 3 2 1 6 6 H 1.48497 * 109.47256 * 149.99638 * 3 2 1 7 7 C 1.37884 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99653 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99886 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46847 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47042 * 64.99997 * 12 11 10 14 14 C 1.34232 * 116.99357 * 179.97438 * 13 12 11 15 15 O 1.20815 * 120.00661 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99508 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47052 * 179.97438 * 17 16 14 19 19 C 1.36323 * 120.05334 * 100.00010 * 18 17 16 20 20 C 1.40914 * 118.25907 * 179.97438 * 19 18 17 21 21 C 1.40368 * 121.29969 * 179.97438 * 20 19 18 22 22 C 1.36185 * 119.63389 * 180.02562 * 21 20 19 23 23 C 1.39308 * 120.85875 * 359.70832 * 22 21 20 24 24 C 1.36116 * 121.03966 * 0.58155 * 23 22 21 25 25 C 1.40552 * 119.75752 * 359.44484 * 24 23 22 26 26 N 1.33763 * 121.00089 * 180.22939 * 25 24 23 27 27 C 1.31556 * 121.26451 * 179.97438 * 26 25 24 28 28 O 1.35579 * 119.20586 * 180.02562 * 27 26 25 29 29 H 0.97000 * 120.00417 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46874 * 60.00318 * 9 7 2 31 31 H 1.09000 * 109.47395 * 300.00135 * 9 7 2 32 32 H 1.09002 * 109.46953 * 59.99723 * 11 10 9 33 33 H 1.08994 * 109.47194 * 300.00270 * 11 10 9 34 34 H 1.09001 * 109.46885 * 304.99872 * 12 11 10 35 35 H 1.09000 * 109.46573 * 185.00038 * 12 11 10 36 36 H 1.08998 * 109.47446 * 59.99723 * 16 14 13 37 37 H 1.08997 * 109.46869 * 299.99792 * 16 14 13 38 38 H 1.08998 * 109.47233 * 59.99578 * 17 16 14 39 39 H 1.08997 * 109.47102 * 299.99636 * 17 16 14 40 40 H 1.08002 * 120.87705 * 359.95385 * 19 18 17 41 41 H 1.08004 * 120.18165 * 0.04860 * 21 20 19 42 42 H 1.08005 * 119.56980 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.48042 * 180.30625 * 23 22 21 44 44 H 1.08002 * 120.12395 * 179.72832 * 24 23 22 45 45 H 0.96701 * 113.99726 * 270.01784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 2.1796 -3.5854 0.0027 11 6 1.5650 -4.8755 0.0032 12 6 2.6480 -5.9562 0.0036 13 8 3.3993 -5.8881 1.2442 14 6 4.3934 -6.7758 1.4041 15 8 4.6277 -7.5832 0.5364 16 6 5.2166 -6.7660 2.6664 17 6 6.2742 -7.8691 2.5941 18 6 7.0978 -7.8589 3.8562 19 6 6.8377 -8.7568 4.8484 20 6 7.6314 -8.7139 6.0120 21 6 7.4188 -9.6078 7.0731 22 6 8.2058 -9.5358 8.1822 23 6 9.2241 -8.5897 8.2756 24 6 9.4538 -7.7040 7.2678 25 6 8.6621 -7.7471 6.1073 26 7 8.8691 -6.8917 5.0999 27 6 8.1316 -6.9277 4.0112 28 8 8.3781 -6.0411 3.0155 29 1 -0.4851 0.8400 -0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6246 -2.5563 0.8919 32 1 0.9451 -4.9830 -0.8869 33 1 0.9445 -4.9820 0.8930 34 1 3.3214 -5.7960 -0.8383 35 1 2.1819 -6.9375 -0.0855 36 1 4.5677 -6.9399 3.5247 37 1 5.7077 -5.7987 2.7723 38 1 6.9230 -7.6948 1.7358 39 1 5.7834 -8.8366 2.4880 40 1 6.0439 -9.4819 4.7457 41 1 6.6357 -10.3489 7.0102 42 1 8.0416 -10.2244 8.9979 43 1 9.8381 -8.5555 9.1634 44 1 10.2445 -6.9738 7.3577 45 1 7.8818 -5.2148 3.0928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815230058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:34 Heat of formation + Delta-G solvation = -129.388142 kcal Electronic energy + Delta-G solvation = -28130.976695 eV Core-core repulsion = 23885.704857 eV Total energy + Delta-G solvation = -4245.271838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46283 -40.38902 -38.80423 -37.20309 -36.34688 -36.09162 -34.99721 -32.94186 -32.77961 -30.53736 -30.10580 -29.63620 -26.99656 -25.74677 -24.27765 -23.04583 -22.57850 -22.38159 -21.94530 -20.64824 -19.45818 -18.38238 -17.87385 -17.15609 -16.76092 -16.68206 -16.44226 -16.07388 -15.59328 -15.38932 -14.98595 -14.77110 -14.62256 -14.40685 -14.17615 -13.99229 -13.78877 -13.67145 -13.20628 -12.98748 -12.72089 -12.44738 -12.29142 -12.02911 -11.95563 -11.75779 -11.71924 -11.45712 -11.39737 -10.96495 -10.87239 -10.85727 -10.79187 -10.45057 -10.39244 -10.07111 -9.82938 -9.15699 -8.97745 -8.90365 -8.66598 -8.24208 -6.14252 -4.16032 -0.05587 0.31395 1.54909 2.21578 2.33735 2.74361 3.20447 3.28738 3.33842 3.39093 3.63941 4.02215 4.18317 4.28466 4.30194 4.40660 4.49386 4.60310 4.65765 4.69770 4.77686 4.81938 4.92981 4.99073 5.17609 5.22232 5.22404 5.30633 5.34128 5.42950 5.50191 5.57288 5.69872 5.79047 5.83162 5.89986 5.92443 5.99499 6.03041 6.05890 6.36259 6.56772 7.02417 7.12597 7.36860 7.50340 7.75342 7.79526 8.09818 8.49342 8.96362 9.48802 10.97227 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.001860 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.264701 B =15049.193267 C =16272.569309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.074 3.926 13 O -0.341 6.341 14 C 0.462 3.538 15 O -0.516 6.516 16 C -0.110 4.110 17 C -0.063 4.063 18 C -0.145 4.145 19 C -0.040 4.040 20 C -0.110 4.110 21 C -0.091 4.091 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.096 4.096 25 C 0.147 3.853 26 N -0.494 5.494 27 C 0.354 3.646 28 O -0.478 6.478 29 H 0.264 0.736 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.163 -22.056 15.517 30.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.001 3.999 13 O -0.257 6.257 14 C 0.305 3.695 15 O -0.405 6.405 16 C -0.147 4.147 17 C -0.101 4.101 18 C -0.149 4.149 19 C -0.066 4.066 20 C -0.112 4.112 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.114 4.114 25 C 0.026 3.974 26 N -0.212 5.212 27 C 0.159 3.841 28 O -0.286 6.286 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 15.301 -21.917 15.141 30.720 hybrid contribution -0.948 0.677 -0.136 1.173 sum 14.353 -21.240 15.005 29.703 Atomic orbital electron populations 1.69953 1.06104 1.27222 1.50463 1.24954 0.94998 0.99471 0.95101 0.86325 0.79670 0.82173 0.78263 1.20444 1.21056 1.19594 1.21041 0.94089 0.89270 1.50934 0.91505 1.20245 0.88750 0.83495 0.95517 1.87915 1.35330 1.12608 1.95227 1.22325 0.93270 0.85498 1.00560 1.23224 0.93686 0.98759 0.84249 1.86600 1.43440 1.54024 1.41618 1.23513 0.79171 0.78039 0.88774 1.90653 1.67892 1.38258 1.43683 1.21313 0.96874 1.02028 0.94507 1.20312 0.95710 0.99352 0.94700 1.20601 0.97634 0.98510 0.98126 1.21366 0.97413 0.96833 0.90952 1.18853 0.98012 0.98242 0.96132 1.20992 0.99475 0.97828 0.92645 1.20948 0.95703 0.98948 0.98248 1.20937 0.97499 0.94627 0.98709 1.20830 0.99289 0.99645 0.91659 1.18565 0.94342 0.91612 0.92895 1.67558 1.27546 1.25629 1.00511 1.19216 0.88741 0.90394 0.85706 1.84735 1.70608 1.30574 1.42714 0.92616 0.97591 0.97495 0.91944 0.93218 0.90424 0.90436 0.87507 0.87732 0.88623 0.89499 0.83601 0.85043 0.85387 0.85149 0.84584 0.73401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -15.06 9.43 -34.44 -0.32 -15.39 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.25 5.69 36.01 0.20 5.46 16 10 O -0.39 -9.33 10.30 -38.80 -0.40 -9.73 16 11 C 0.06 1.09 6.33 37.16 0.24 1.33 16 12 C 0.07 1.14 5.84 37.16 0.22 1.36 16 13 O -0.34 -5.35 10.19 -42.03 -0.43 -5.78 16 14 C 0.46 6.13 7.96 36.01 0.29 6.42 16 15 O -0.52 -7.88 15.73 -18.74 -0.29 -8.17 16 16 C -0.11 -1.00 5.79 -27.88 -0.16 -1.16 16 17 C -0.06 -0.54 4.29 -27.88 -0.12 -0.66 16 18 C -0.15 -1.29 5.13 -104.65 -0.54 -1.83 16 19 C -0.04 -0.31 9.49 -39.26 -0.37 -0.68 16 20 C -0.11 -0.96 5.74 -106.78 -0.61 -1.57 16 21 C -0.09 -0.58 9.77 -39.52 -0.39 -0.97 16 22 C -0.12 -0.68 9.96 -39.92 -0.40 -1.08 16 23 C -0.10 -0.60 9.94 -39.95 -0.40 -1.00 16 24 C -0.10 -0.80 9.98 -39.47 -0.39 -1.19 16 25 C 0.15 1.53 6.60 -84.85 -0.56 0.97 16 26 N -0.49 -5.86 10.37 -11.05 -0.11 -5.97 16 27 C 0.35 3.76 7.70 -17.01 -0.13 3.63 16 28 O -0.48 -4.74 12.67 -18.43 -0.23 -4.97 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 35 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.83 7.59 -51.93 -0.39 0.44 16 38 H 0.10 0.96 7.80 -51.93 -0.40 0.56 16 39 H 0.09 0.70 7.96 -51.93 -0.41 0.28 16 40 H 0.15 0.72 8.04 -52.49 -0.42 0.30 16 41 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 43 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.41 2.39 8.60 45.56 0.39 2.79 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -36.42 393.82 -8.81 -45.23 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.44 Total: -2.48 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -3.55 Total: -4.87 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.62 Total: -31.84 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.36 Total: -28.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.42 -8.81 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815230058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.161 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds