Wall clock time and date at job start Wed Apr 1 2020 02:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00226 * 2 1 4 4 H 1.48499 * 109.46884 * 269.99710 * 3 2 1 5 5 H 1.48501 * 109.46997 * 29.99604 * 3 2 1 6 6 H 1.48497 * 109.47256 * 149.99638 * 3 2 1 7 7 C 1.37884 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99653 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99886 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46847 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47042 * 64.99997 * 12 11 10 14 14 C 1.34232 * 116.99357 * 179.97438 * 13 12 11 15 15 O 1.20815 * 120.00661 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99508 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47052 * 179.97438 * 17 16 14 19 19 C 1.36323 * 120.05334 * 100.00010 * 18 17 16 20 20 C 1.40914 * 118.25907 * 179.97438 * 19 18 17 21 21 C 1.40368 * 121.29969 * 179.97438 * 20 19 18 22 22 C 1.36185 * 119.63389 * 180.02562 * 21 20 19 23 23 C 1.39308 * 120.85875 * 359.70832 * 22 21 20 24 24 C 1.36116 * 121.03966 * 0.58155 * 23 22 21 25 25 C 1.40552 * 119.75752 * 359.44484 * 24 23 22 26 26 N 1.33763 * 121.00089 * 180.22939 * 25 24 23 27 27 C 1.31556 * 121.26451 * 179.97438 * 26 25 24 28 28 O 1.35579 * 119.20586 * 180.02562 * 27 26 25 29 29 H 0.97000 * 120.00417 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46874 * 60.00318 * 9 7 2 31 31 H 1.09000 * 109.47395 * 300.00135 * 9 7 2 32 32 H 1.09002 * 109.46953 * 59.99723 * 11 10 9 33 33 H 1.08994 * 109.47194 * 300.00270 * 11 10 9 34 34 H 1.09001 * 109.46885 * 304.99872 * 12 11 10 35 35 H 1.09000 * 109.46573 * 185.00038 * 12 11 10 36 36 H 1.08998 * 109.47446 * 59.99723 * 16 14 13 37 37 H 1.08997 * 109.46869 * 299.99792 * 16 14 13 38 38 H 1.08998 * 109.47233 * 59.99578 * 17 16 14 39 39 H 1.08997 * 109.47102 * 299.99636 * 17 16 14 40 40 H 1.08002 * 120.87705 * 359.95385 * 19 18 17 41 41 H 1.08004 * 120.18165 * 0.04860 * 21 20 19 42 42 H 1.08005 * 119.56980 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.48042 * 180.30625 * 23 22 21 44 44 H 1.08002 * 120.12395 * 179.72832 * 24 23 22 45 45 H 0.96701 * 113.99726 * 270.01784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 2.1796 -3.5854 0.0027 11 6 1.5650 -4.8755 0.0032 12 6 2.6480 -5.9562 0.0036 13 8 3.3993 -5.8881 1.2442 14 6 4.3934 -6.7758 1.4041 15 8 4.6277 -7.5832 0.5364 16 6 5.2166 -6.7660 2.6664 17 6 6.2742 -7.8691 2.5941 18 6 7.0978 -7.8589 3.8562 19 6 6.8377 -8.7568 4.8484 20 6 7.6314 -8.7139 6.0120 21 6 7.4188 -9.6078 7.0731 22 6 8.2058 -9.5358 8.1822 23 6 9.2241 -8.5897 8.2756 24 6 9.4538 -7.7040 7.2678 25 6 8.6621 -7.7471 6.1073 26 7 8.8691 -6.8917 5.0999 27 6 8.1316 -6.9277 4.0112 28 8 8.3781 -6.0411 3.0155 29 1 -0.4851 0.8400 -0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6246 -2.5563 0.8919 32 1 0.9451 -4.9830 -0.8869 33 1 0.9445 -4.9820 0.8930 34 1 3.3214 -5.7960 -0.8383 35 1 2.1819 -6.9375 -0.0855 36 1 4.5677 -6.9399 3.5247 37 1 5.7077 -5.7987 2.7723 38 1 6.9230 -7.6948 1.7358 39 1 5.7834 -8.8366 2.4880 40 1 6.0439 -9.4819 4.7457 41 1 6.6357 -10.3489 7.0102 42 1 8.0416 -10.2244 8.9979 43 1 9.8381 -8.5555 9.1634 44 1 10.2445 -6.9738 7.3577 45 1 7.8818 -5.2148 3.0928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815230058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:33 Heat of formation + Delta-G solvation = -154.824836 kcal Electronic energy + Delta-G solvation = -28132.079713 eV Core-core repulsion = 23885.704857 eV Total energy + Delta-G solvation = -4246.374856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.10308 -41.47004 -39.43545 -38.77354 -37.53455 -36.91367 -35.71506 -34.94883 -33.57042 -31.79751 -30.69206 -30.52189 -29.01397 -26.52222 -24.92687 -24.57398 -23.91576 -23.26996 -22.89129 -21.63092 -20.10677 -19.01634 -18.88538 -18.68451 -18.01619 -17.75417 -17.51362 -17.16098 -16.93423 -16.47177 -16.20603 -16.08003 -15.55403 -15.27307 -15.16078 -14.97195 -14.76048 -14.37502 -14.26278 -13.95236 -13.88891 -13.66103 -13.35750 -13.15166 -12.95746 -12.91230 -12.70484 -12.57213 -12.44076 -12.35127 -12.28374 -12.07262 -12.00460 -11.70438 -11.58242 -11.39740 -11.28130 -10.89700 -10.50422 -10.27253 -9.58319 -9.22280 -8.32718 -6.44638 -0.62236 -0.29159 0.97510 1.17637 1.40404 1.42674 1.54741 1.63999 1.86000 2.34053 2.58214 3.01261 3.04102 3.06840 3.37258 3.62731 3.63939 3.74211 3.84434 3.94043 4.01277 4.06117 4.12285 4.17358 4.26128 4.37430 4.42679 4.43681 4.50959 4.54659 4.69095 4.71151 4.80250 4.85661 4.96859 5.07551 5.08376 5.13339 5.17510 5.40695 5.45473 5.48537 5.51711 5.54168 5.89232 5.94810 6.49605 6.51700 6.71562 6.79642 6.85187 7.26839 8.79315 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.001860 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.264701 B =15049.193267 C =16272.569309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.207 3.793 10 O -0.409 6.409 11 C 0.052 3.948 12 C 0.078 3.922 13 O -0.360 6.360 14 C 0.462 3.538 15 O -0.538 6.538 16 C -0.103 4.103 17 C -0.050 4.050 18 C -0.154 4.154 19 C -0.029 4.029 20 C -0.126 4.126 21 C -0.091 4.091 22 C -0.121 4.121 23 C -0.087 4.087 24 C -0.125 4.125 25 C 0.120 3.880 26 N -0.530 5.530 27 C 0.338 3.662 28 O -0.493 6.493 29 H 0.271 0.729 30 H -0.008 1.008 31 H -0.010 1.010 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.133 0.867 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.159 -23.315 17.190 32.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.132 3.868 10 O -0.329 6.329 11 C -0.024 4.024 12 C 0.005 3.995 13 O -0.277 6.277 14 C 0.307 3.693 15 O -0.428 6.428 16 C -0.141 4.141 17 C -0.088 4.088 18 C -0.158 4.158 19 C -0.054 4.054 20 C -0.128 4.128 21 C -0.109 4.109 22 C -0.139 4.139 23 C -0.106 4.106 24 C -0.143 4.143 25 C -0.001 4.001 26 N -0.250 5.250 27 C 0.145 3.855 28 O -0.303 6.303 29 H 0.080 0.920 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.196 0.804 41 H 0.179 0.821 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.150 0.850 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 15.295 -23.194 16.816 32.476 hybrid contribution -0.936 0.935 -0.561 1.437 sum 14.360 -22.259 16.255 31.079 Atomic orbital electron populations 1.70050 1.07633 1.28661 1.50397 1.25933 0.95987 1.03286 0.93954 0.85207 0.78398 0.77154 0.78812 1.19365 1.19855 1.18956 1.21380 0.94082 0.90902 1.52330 0.92155 1.19876 0.88575 0.84392 0.93910 1.87859 1.35510 1.14208 1.95328 1.22659 0.94609 0.83379 1.01786 1.23164 0.93109 0.99071 0.84184 1.86598 1.44341 1.55137 1.41583 1.24245 0.78458 0.76951 0.89636 1.90640 1.68319 1.39064 1.44782 1.21436 0.96732 1.02852 0.93044 1.20163 0.95102 0.99550 0.93978 1.20513 0.97635 0.98991 0.98625 1.21744 0.97360 0.96373 0.89921 1.19121 0.97857 0.98517 0.97349 1.21373 1.00071 0.97546 0.91920 1.21377 0.94772 0.98835 0.98869 1.21316 0.97361 0.93354 0.98592 1.20987 0.99978 1.01087 0.92273 1.18972 0.95637 0.92328 0.93153 1.67506 1.28788 1.27158 1.01524 1.19463 0.89418 0.91015 0.85643 1.84694 1.71289 1.31412 1.42914 0.92010 0.99036 0.99187 0.90203 0.92473 0.91209 0.87277 0.85156 0.86804 0.90486 0.88502 0.80401 0.82144 0.82245 0.82532 0.84957 0.72025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.98 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.55 -32.63 9.43 25.60 0.24 -32.39 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.51 5.69 71.24 0.41 11.92 16 10 O -0.41 -19.83 10.30 -145.56 -1.50 -21.33 16 11 C 0.05 1.86 6.33 71.98 0.46 2.31 16 12 C 0.08 2.34 5.84 71.98 0.42 2.76 16 13 O -0.36 -11.08 10.19 -48.79 -0.50 -11.58 16 14 C 0.46 11.90 7.96 71.24 0.57 12.46 16 15 O -0.54 -16.06 15.73 22.00 0.35 -15.72 16 16 C -0.10 -1.76 5.79 29.85 0.17 -1.59 16 17 C -0.05 -0.82 4.29 29.85 0.13 -0.70 16 18 C -0.15 -2.65 5.13 -19.88 -0.10 -2.75 16 19 C -0.03 -0.39 9.49 22.48 0.21 -0.18 16 20 C -0.13 -2.02 5.74 -21.27 -0.12 -2.14 16 21 C -0.09 -0.90 9.77 22.31 0.22 -0.68 16 22 C -0.12 -0.99 9.96 22.05 0.22 -0.77 16 23 C -0.09 -0.90 9.94 22.03 0.22 -0.68 16 24 C -0.12 -2.09 9.98 22.34 0.22 -1.87 16 25 C 0.12 2.53 6.60 40.25 0.27 2.79 16 26 N -0.53 -13.25 10.37 -302.14 -3.13 -16.38 16 27 C 0.34 7.47 7.70 85.16 0.66 8.13 16 28 O -0.49 -10.37 12.67 -88.87 -1.13 -11.50 16 29 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 35 H 0.11 2.57 8.13 -2.39 -0.02 2.55 16 36 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.11 1.75 7.59 -2.39 -0.02 1.74 16 38 H 0.08 1.57 7.80 -2.39 -0.02 1.55 16 39 H 0.10 1.38 7.96 -2.39 -0.02 1.37 16 40 H 0.18 1.13 8.04 -2.91 -0.02 1.11 16 41 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 42 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 43 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 44 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.42 5.46 8.60 -74.06 -0.64 4.83 16 Total: -1.00 -80.37 393.82 1.43 -78.95 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.38 Total: 8.78 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 4.64 Total: -2.52 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -2.85 Total: -71.31 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -2.78 Total: -60.13 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -80.37 1.43 -78.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815230058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.879 kcal (2) G-P(sol) polarization free energy of solvation -80.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds