Wall clock time and date at job start Wed Apr 1 2020 03:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38554 * 120.10587 * 2 1 4 4 O 1.35738 * 119.73476 * 359.97438 * 3 2 1 5 5 C 1.39335 * 120.53852 * 180.02562 * 3 2 1 6 6 C 1.36498 * 120.43095 * 0.02562 * 5 3 2 7 7 C 1.39931 * 119.79713 * 359.97438 * 6 5 3 8 8 C 1.46440 * 120.99876 * 179.97438 * 7 6 5 9 9 C 1.50704 * 120.90303 * 359.97438 * 8 7 6 10 10 N 1.46901 * 109.46649 * 74.85076 * 9 8 7 11 11 C 1.47906 * 110.99725 * 175.72661 * 10 9 8 12 12 C 1.53990 * 107.06114 * 214.15432 * 11 10 9 13 13 C 1.54606 * 105.13904 * 1.22789 * 12 11 10 14 14 O 1.42895 * 110.72374 * 263.42113 * 13 12 11 15 15 C 1.50705 * 110.72179 * 140.31208 * 13 12 11 16 16 H 1.07997 * 119.99689 * 241.45506 * 15 13 12 17 17 C 1.37875 * 119.99914 * 61.45665 * 15 13 12 18 18 N 1.31515 * 119.99964 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99657 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47285 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46975 * 120.00073 * 19 17 15 22 22 H 1.48497 * 109.46987 * 239.99809 * 19 17 15 23 23 C 1.48537 * 111.00133 * 58.33562 * 10 9 8 24 24 C 1.35850 * 118.19177 * 179.15088 * 8 7 6 25 25 C 1.41008 * 119.82624 * 0.86519 * 24 8 7 26 26 O 1.21793 * 119.15132 * 179.40681 * 25 24 8 27 27 O 1.34223 * 121.69000 * 359.38266 * 25 24 8 28 28 C 1.35021 * 121.46813 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.46660 * 89.99839 * 1 2 3 30 30 H 1.09000 * 109.47238 * 330.00215 * 1 2 3 31 31 H 1.08999 * 109.47337 * 209.99514 * 1 2 3 32 32 H 0.96701 * 114.00494 * 89.99279 * 4 3 2 33 33 H 1.07994 * 119.78330 * 179.97438 * 5 3 2 34 34 H 1.08008 * 120.10320 * 179.97438 * 6 5 3 35 35 H 1.09001 * 109.47372 * 194.84856 * 9 8 7 36 36 H 1.08999 * 109.46931 * 314.85512 * 9 8 7 37 37 H 1.08999 * 109.92184 * 333.51136 * 11 10 9 38 38 H 1.09004 * 109.91318 * 94.80596 * 11 10 9 39 39 H 1.08997 * 110.30741 * 120.14166 * 12 11 10 40 40 H 1.09003 * 110.31365 * 242.21626 * 12 11 10 41 41 H 0.96704 * 113.99987 * 298.54058 * 14 13 12 42 42 H 0.96998 * 119.99780 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.66511 * 278.15439 * 23 10 9 44 44 H 1.08997 * 110.66738 * 41.28087 * 23 10 9 45 45 H 1.07997 * 120.08702 * 180.27142 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1986 0.0000 4 8 1.5200 2.3723 -0.0005 5 6 3.5953 1.2092 -0.0005 6 6 4.2955 0.0375 -0.0016 7 6 3.6099 -1.1824 -0.0016 8 6 4.3346 -2.4549 -0.0033 9 6 5.8413 -2.4875 -0.0056 10 7 6.3406 -2.1368 1.3306 11 6 7.8134 -2.2574 1.3946 12 6 8.1664 -2.7335 2.8158 13 6 6.8078 -2.9030 3.5340 14 8 6.4946 -1.7409 4.3043 15 6 6.8152 -4.1323 4.4057 16 1 6.1200 -4.9358 4.2121 17 6 7.7095 -4.2312 5.4505 18 7 8.5564 -3.2530 5.6859 19 14 7.7181 -5.7547 6.5314 20 1 6.6760 -6.7019 6.0602 21 1 9.0499 -6.4073 6.4563 22 1 7.4358 -5.3662 7.9365 23 6 5.8130 -3.0707 2.3581 24 6 3.6119 -3.6050 0.0145 25 6 2.2030 -3.5481 0.0155 26 8 1.5672 -4.5869 0.0205 27 8 1.5445 -2.3785 0.0114 28 6 2.2023 -1.1993 0.0057 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 0.8900 0.5138 31 1 -0.3634 -0.8900 0.5137 32 1 1.3220 2.7125 0.8827 33 1 4.1246 2.1505 -0.0009 34 1 5.3755 0.0518 -0.0024 35 1 6.1826 -3.4884 -0.2700 36 1 6.2191 -1.7704 -0.7344 37 1 8.1584 -2.9872 0.6621 38 1 8.2739 -1.2883 1.2025 39 1 8.6944 -3.6862 2.7754 40 1 8.7745 -1.9859 3.3252 41 1 7.1324 -1.5503 5.0057 42 1 9.1853 -3.3224 6.4211 43 1 4.8069 -2.7808 2.6611 44 1 5.8239 -4.0959 1.9881 45 1 4.1151 -4.5606 0.0183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829982867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:20 Heat of formation + Delta-G solvation = -113.175586 kcal Electronic energy + Delta-G solvation = -30909.206065 eV Core-core repulsion = 26664.637256 eV Total energy + Delta-G solvation = -4244.568809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00154 -39.72036 -38.75753 -37.80467 -36.69318 -35.45131 -34.00914 -32.54826 -32.17121 -30.11676 -29.38189 -28.15112 -27.30202 -26.31591 -24.54608 -24.39200 -22.72050 -21.31591 -20.35946 -20.04137 -19.47016 -18.02258 -17.71258 -17.49135 -17.05412 -16.77356 -15.63784 -15.51182 -15.38186 -15.07282 -14.89848 -14.57666 -14.20327 -13.93864 -13.81695 -13.57669 -13.46297 -13.16637 -12.76484 -12.59738 -12.50953 -12.33061 -12.18080 -12.02611 -11.91067 -11.52178 -11.40106 -11.31931 -11.04752 -10.89934 -10.81015 -10.57056 -10.45577 -10.21776 -10.07397 -9.89675 -9.24319 -8.77272 -8.65110 -8.38411 -8.18714 -7.97078 -6.26612 -4.34682 0.09868 0.90571 1.37969 2.32417 2.72979 3.17989 3.27369 3.32068 3.46849 3.89237 4.07484 4.12486 4.24729 4.31088 4.52525 4.63065 4.80167 4.98601 5.02468 5.07113 5.29920 5.35053 5.42655 5.46228 5.49169 5.54884 5.66101 5.76733 5.81116 5.88599 5.94311 5.98649 6.03574 6.08276 6.21529 6.30638 6.31475 6.45903 6.75568 6.92178 7.14114 7.21698 7.27881 7.38213 7.40738 7.45546 7.46666 7.75609 8.10888 8.68414 9.34618 9.47978 10.80403 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003298 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.418316 B = 8486.774130 C = 9172.179830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.134 4.134 3 C 0.156 3.844 4 O -0.490 6.490 5 C -0.165 4.165 6 C -0.021 4.021 7 C -0.142 4.142 8 C 0.053 3.947 9 C 0.069 3.931 10 N -0.505 5.505 11 C 0.036 3.964 12 C -0.129 4.129 13 C 0.258 3.742 14 O -0.580 6.580 15 C -0.539 4.539 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.052 3.948 24 C -0.256 4.256 25 C 0.515 3.485 26 O -0.470 6.470 27 O -0.270 6.270 28 C 0.158 3.842 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.396 0.604 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.378 0.622 42 H 0.266 0.734 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 9.651 -12.484 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C 0.111 3.889 4 O -0.302 6.302 5 C -0.183 4.183 6 C -0.039 4.039 7 C -0.143 4.143 8 C 0.051 3.949 9 C -0.059 4.059 10 N -0.229 5.229 11 C -0.092 4.092 12 C -0.168 4.168 13 C 0.218 3.782 14 O -0.388 6.388 15 C -0.577 4.577 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.075 4.075 24 C -0.276 4.276 25 C 0.365 3.635 26 O -0.358 6.358 27 O -0.182 6.182 28 C 0.113 3.887 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.254 0.746 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.227 0.773 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.159 9.697 -13.290 18.364 hybrid contribution 1.077 -1.732 1.390 2.468 sum -7.082 7.965 -11.900 15.975 Atomic orbital electron populations 1.20525 0.89235 1.03166 1.02897 1.19457 0.97559 0.89265 1.07282 1.18102 0.89481 0.84251 0.97074 1.84743 1.76200 1.35359 1.33872 1.21164 0.92957 0.99594 1.04600 1.20874 1.01078 0.89516 0.92441 1.18970 0.91121 0.94744 1.09476 1.21492 0.96466 0.90866 0.86048 1.21421 0.88500 1.01203 0.94738 1.64988 1.07047 1.49564 1.01318 1.22963 0.87125 0.99695 0.99374 1.22949 1.00989 1.00803 0.92079 1.19300 0.87422 0.84514 0.86983 1.86135 1.54924 1.47601 1.50123 1.21639 1.18756 1.03174 1.14153 0.92089 1.24977 0.94469 0.96606 0.96947 1.69732 1.20923 1.32091 1.30585 0.86448 0.77938 0.82781 0.80333 1.19639 1.20883 1.20751 1.23250 0.99755 0.92787 0.91748 1.22448 0.92672 1.00765 1.11690 1.19135 0.88319 0.80868 0.75226 1.90971 1.70746 1.26886 1.47218 1.83504 1.43258 1.13763 1.77679 1.18597 0.89185 0.83346 0.97568 0.90853 0.91032 0.90879 0.74602 0.84257 0.83214 0.92663 0.88993 0.94839 0.91365 0.91906 0.91279 0.77297 0.92394 0.91102 0.93331 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.58 36.01 0.35 -0.65 16 2 C -0.13 -1.57 5.90 -104.36 -0.62 -2.19 16 3 C 0.16 1.62 6.68 -39.06 -0.26 1.35 16 4 O -0.49 -4.04 12.50 -18.92 -0.24 -4.28 16 5 C -0.16 -1.68 9.91 -39.80 -0.39 -2.08 16 6 C -0.02 -0.24 9.40 -39.58 -0.37 -0.62 16 7 C -0.14 -1.90 5.87 -105.01 -0.62 -2.52 16 8 C 0.05 0.72 4.62 -102.18 -0.47 0.25 16 9 C 0.07 0.91 4.23 -4.97 -0.02 0.88 16 10 N -0.50 -8.46 5.32 -231.88 -1.23 -9.69 16 11 C 0.04 0.61 6.70 -2.75 -0.02 0.59 16 12 C -0.13 -2.76 5.26 -25.37 -0.13 -2.90 16 13 C 0.26 6.10 0.95 -89.90 -0.09 6.01 16 14 O -0.58 -14.61 13.10 -35.23 -0.46 -15.07 16 15 C -0.54 -14.05 8.14 -34.44 -0.28 -14.33 16 16 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 17 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16 18 N -0.89 -23.14 11.00 55.43 0.61 -22.53 16 19 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.05 1.05 4.70 -1.89 -0.01 1.04 16 24 C -0.26 -3.71 9.36 -39.39 -0.37 -4.08 16 25 C 0.51 8.43 7.89 31.78 0.25 8.68 16 26 O -0.47 -8.92 17.91 -19.60 -0.35 -9.27 16 27 O -0.27 -4.15 8.92 -20.79 -0.19 -4.34 16 28 C 0.16 2.17 6.72 -38.48 -0.26 1.91 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.56 7.52 -51.93 -0.39 0.17 16 31 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 32 H 0.40 1.50 9.06 45.56 0.41 1.91 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.15 1.62 6.87 -52.48 -0.36 1.26 16 35 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 36 H 0.09 0.98 7.46 -51.93 -0.39 0.60 16 37 H 0.03 0.51 7.67 -51.93 -0.40 0.11 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.42 7.84 -51.93 -0.41 1.01 16 40 H 0.07 1.56 7.99 -51.93 -0.41 1.15 16 41 H 0.38 9.64 7.46 45.56 0.34 9.98 16 42 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 43 H 0.07 1.54 7.96 -51.93 -0.41 1.12 16 44 H 0.05 0.97 7.92 -51.93 -0.41 0.56 16 45 H 0.16 2.17 8.02 -52.49 -0.42 1.75 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -30.37 372.37 -9.13 -39.50 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.46 Total: 11.59 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.41 Total: -6.86 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: -0.62 Total: -32.22 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.23 Total: -32.96 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.37 -9.13 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829982867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.674 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds