Wall clock time and date at job start Wed Apr 1 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38554 * 120.10587 * 2 1 4 4 O 1.35738 * 119.73476 * 359.97438 * 3 2 1 5 5 C 1.39335 * 120.53852 * 180.02562 * 3 2 1 6 6 C 1.36498 * 120.43095 * 0.02562 * 5 3 2 7 7 C 1.39931 * 119.79713 * 359.97438 * 6 5 3 8 8 C 1.46440 * 120.99876 * 179.97438 * 7 6 5 9 9 C 1.50704 * 120.90303 * 359.97438 * 8 7 6 10 10 N 1.46901 * 109.46649 * 74.85076 * 9 8 7 11 11 C 1.47906 * 110.99725 * 175.72661 * 10 9 8 12 12 C 1.53990 * 107.06114 * 214.15432 * 11 10 9 13 13 C 1.54606 * 105.13904 * 1.22789 * 12 11 10 14 14 O 1.42895 * 110.72374 * 263.42113 * 13 12 11 15 15 C 1.50705 * 110.72179 * 140.31208 * 13 12 11 16 16 H 1.07997 * 119.99689 * 241.45506 * 15 13 12 17 17 C 1.37875 * 119.99914 * 61.45665 * 15 13 12 18 18 N 1.31515 * 119.99964 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99657 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47285 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46975 * 120.00073 * 19 17 15 22 22 H 1.48497 * 109.46987 * 239.99809 * 19 17 15 23 23 C 1.48537 * 111.00133 * 58.33562 * 10 9 8 24 24 C 1.35850 * 118.19177 * 179.15088 * 8 7 6 25 25 C 1.41008 * 119.82624 * 0.86519 * 24 8 7 26 26 O 1.21793 * 119.15132 * 179.40681 * 25 24 8 27 27 O 1.34223 * 121.69000 * 359.38266 * 25 24 8 28 28 C 1.35021 * 121.46813 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.46660 * 89.99839 * 1 2 3 30 30 H 1.09000 * 109.47238 * 330.00215 * 1 2 3 31 31 H 1.08999 * 109.47337 * 209.99514 * 1 2 3 32 32 H 0.96701 * 114.00494 * 89.99279 * 4 3 2 33 33 H 1.07994 * 119.78330 * 179.97438 * 5 3 2 34 34 H 1.08008 * 120.10320 * 179.97438 * 6 5 3 35 35 H 1.09001 * 109.47372 * 194.84856 * 9 8 7 36 36 H 1.08999 * 109.46931 * 314.85512 * 9 8 7 37 37 H 1.08999 * 109.92184 * 333.51136 * 11 10 9 38 38 H 1.09004 * 109.91318 * 94.80596 * 11 10 9 39 39 H 1.08997 * 110.30741 * 120.14166 * 12 11 10 40 40 H 1.09003 * 110.31365 * 242.21626 * 12 11 10 41 41 H 0.96704 * 113.99987 * 298.54058 * 14 13 12 42 42 H 0.96998 * 119.99780 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.66511 * 278.15439 * 23 10 9 44 44 H 1.08997 * 110.66738 * 41.28087 * 23 10 9 45 45 H 1.07997 * 120.08702 * 180.27142 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1986 0.0000 4 8 1.5200 2.3723 -0.0005 5 6 3.5953 1.2092 -0.0005 6 6 4.2955 0.0375 -0.0016 7 6 3.6099 -1.1824 -0.0016 8 6 4.3346 -2.4549 -0.0033 9 6 5.8413 -2.4875 -0.0056 10 7 6.3406 -2.1368 1.3306 11 6 7.8134 -2.2574 1.3946 12 6 8.1664 -2.7335 2.8158 13 6 6.8078 -2.9030 3.5340 14 8 6.4946 -1.7409 4.3043 15 6 6.8152 -4.1323 4.4057 16 1 6.1200 -4.9358 4.2121 17 6 7.7095 -4.2312 5.4505 18 7 8.5564 -3.2530 5.6859 19 14 7.7181 -5.7547 6.5314 20 1 6.6760 -6.7019 6.0602 21 1 9.0499 -6.4073 6.4563 22 1 7.4358 -5.3662 7.9365 23 6 5.8130 -3.0707 2.3581 24 6 3.6119 -3.6050 0.0145 25 6 2.2030 -3.5481 0.0155 26 8 1.5672 -4.5869 0.0205 27 8 1.5445 -2.3785 0.0114 28 6 2.2023 -1.1993 0.0057 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 0.8900 0.5138 31 1 -0.3634 -0.8900 0.5137 32 1 1.3220 2.7125 0.8827 33 1 4.1246 2.1505 -0.0009 34 1 5.3755 0.0518 -0.0024 35 1 6.1826 -3.4884 -0.2700 36 1 6.2191 -1.7704 -0.7344 37 1 8.1584 -2.9872 0.6621 38 1 8.2739 -1.2883 1.2025 39 1 8.6944 -3.6862 2.7754 40 1 8.7745 -1.9859 3.3252 41 1 7.1324 -1.5503 5.0057 42 1 9.1853 -3.3224 6.4211 43 1 4.8069 -2.7808 2.6611 44 1 5.8239 -4.0959 1.9881 45 1 4.1151 -4.5606 0.0183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829982867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:19 Heat of formation + Delta-G solvation = -135.099362 kcal Electronic energy + Delta-G solvation = -30910.156751 eV Core-core repulsion = 26664.637256 eV Total energy + Delta-G solvation = -4245.519495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.09232 -40.65132 -40.22276 -38.92467 -37.86696 -36.71537 -35.35792 -34.16218 -33.44441 -31.59480 -30.35210 -29.78899 -28.35269 -27.59456 -26.22141 -25.40260 -23.80635 -22.42819 -21.70238 -21.39823 -20.79628 -19.14214 -18.90008 -18.62744 -18.45465 -17.95670 -17.12594 -16.88363 -16.67849 -16.21269 -16.14261 -15.83166 -15.70212 -15.12188 -14.95940 -14.82229 -14.55300 -14.34185 -14.20369 -13.79993 -13.74623 -13.46838 -13.28193 -13.24204 -13.08167 -13.01217 -12.95917 -12.73183 -12.51643 -12.48353 -12.28409 -12.20502 -11.69017 -11.67544 -11.40161 -11.14185 -11.06097 -10.60545 -10.07624 -9.68512 -9.40135 -9.29856 -8.23038 -6.37629 -0.92273 -0.05648 0.39918 1.23453 1.36124 1.41030 1.50390 1.65380 2.36629 2.50645 2.93982 3.02016 3.07170 3.18425 3.23584 3.37956 3.80304 3.83572 3.91964 4.02362 4.12343 4.17184 4.28164 4.37734 4.46608 4.49275 4.55100 4.65367 4.71860 4.73312 4.77657 4.81594 4.87591 5.05363 5.11702 5.16693 5.22696 5.25465 5.28436 5.50041 5.51066 5.60298 5.74201 5.86465 6.00016 6.06869 6.24703 6.28169 6.67933 6.74849 7.34491 7.49734 8.82100 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003298 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.418316 B = 8486.774130 C = 9172.179830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.146 4.146 3 C 0.172 3.828 4 O -0.490 6.490 5 C -0.158 4.158 6 C -0.022 4.022 7 C -0.161 4.161 8 C 0.068 3.932 9 C 0.068 3.932 10 N -0.502 5.502 11 C 0.045 3.955 12 C -0.122 4.122 13 C 0.240 3.760 14 O -0.588 6.588 15 C -0.565 4.565 16 H 0.047 0.953 17 C 0.036 3.964 18 N -0.906 5.906 19 Si 0.951 3.049 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.280 1.280 23 C 0.065 3.935 24 C -0.274 4.274 25 C 0.512 3.488 26 O -0.513 6.513 27 O -0.279 6.279 28 C 0.133 3.867 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.419 0.581 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.372 0.628 42 H 0.269 0.731 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 11.803 -13.625 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.147 4.147 3 C 0.126 3.874 4 O -0.305 6.305 5 C -0.177 4.177 6 C -0.039 4.039 7 C -0.162 4.162 8 C 0.066 3.934 9 C -0.059 4.059 10 N -0.226 5.226 11 C -0.083 4.083 12 C -0.161 4.161 13 C 0.200 3.800 14 O -0.396 6.396 15 C -0.603 4.603 16 H 0.065 0.935 17 C -0.165 4.165 18 N -0.545 5.545 19 Si 0.777 3.223 20 H -0.201 1.201 21 H -0.201 1.201 22 H -0.205 1.205 23 C -0.063 4.063 24 C -0.295 4.295 25 C 0.364 3.636 26 O -0.405 6.405 27 O -0.190 6.190 28 C 0.089 3.911 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.281 0.719 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.220 0.780 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.348 11.889 -14.430 20.089 hybrid contribution 0.785 -2.190 1.759 2.916 sum -6.563 9.700 -12.672 17.255 Atomic orbital electron populations 1.20564 0.88280 1.03592 1.03332 1.19753 0.98515 0.89126 1.07334 1.18139 0.89719 0.84381 0.95133 1.84696 1.75845 1.34107 1.35818 1.21486 0.92934 1.00269 1.02974 1.21062 1.01701 0.89139 0.92049 1.19128 0.91054 0.95314 1.10719 1.21630 0.96880 0.90781 0.84087 1.21597 0.87792 1.03157 0.93304 1.64910 1.06928 1.48437 1.02372 1.22906 0.87113 1.01492 0.96739 1.22716 0.99152 0.99426 0.94757 1.19552 0.89828 0.83083 0.87557 1.86126 1.55039 1.48233 1.50182 1.21911 1.18851 1.04062 1.15490 0.93498 1.25562 0.94222 0.98856 0.97854 1.69795 1.20973 1.32956 1.30792 0.85627 0.77914 0.80020 0.78758 1.20123 1.20085 1.20547 1.22956 0.97954 0.93503 0.91906 1.22407 0.91804 1.01592 1.13663 1.19376 0.88918 0.80717 0.74557 1.90930 1.71556 1.28287 1.49774 1.83442 1.43834 1.14215 1.77550 1.18988 0.89866 0.83151 0.99103 0.90390 0.88744 0.92314 0.71917 0.81508 0.81996 0.91426 0.85281 0.92388 0.89030 0.93810 0.93027 0.77997 0.92188 0.93061 0.93428 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 9.58 71.24 0.68 -1.19 16 2 C -0.15 -3.21 5.90 -19.69 -0.12 -3.33 16 3 C 0.17 3.04 6.68 22.61 0.15 3.19 16 4 O -0.49 -6.21 12.50 -90.62 -1.13 -7.34 16 5 C -0.16 -2.66 9.91 22.13 0.22 -2.44 16 6 C -0.02 -0.44 9.40 22.27 0.21 -0.23 16 7 C -0.16 -4.09 5.87 -20.11 -0.12 -4.20 16 8 C 0.07 1.78 4.62 -18.28 -0.08 1.70 16 9 C 0.07 1.59 4.23 85.56 0.36 1.96 16 10 N -0.50 -15.67 5.32 -887.54 -4.72 -20.39 16 11 C 0.04 1.38 6.70 86.44 0.58 1.96 16 12 C -0.12 -5.13 5.26 31.48 0.17 -4.96 16 13 C 0.24 11.39 0.95 -10.33 -0.01 11.38 16 14 O -0.59 -29.94 13.10 -148.98 -1.95 -31.89 16 15 C -0.56 -30.01 8.14 25.60 0.21 -29.80 16 16 H 0.05 2.55 7.78 -2.91 -0.02 2.52 16 17 C 0.04 1.88 5.28 84.65 0.45 2.33 16 18 N -0.91 -47.16 11.00 21.45 0.24 -46.93 16 19 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 C 0.06 2.61 4.70 86.65 0.41 3.02 16 24 C -0.27 -8.13 9.36 22.39 0.21 -7.92 16 25 C 0.51 17.60 7.89 68.50 0.54 18.14 16 26 O -0.51 -20.73 17.91 18.97 0.34 -20.39 16 27 O -0.28 -8.91 8.92 14.70 0.13 -8.78 16 28 C 0.13 3.62 6.72 22.98 0.15 3.77 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.26 7.52 -2.39 -0.02 1.24 16 31 H 0.06 1.25 7.56 -2.39 -0.02 1.23 16 32 H 0.42 1.47 9.06 -74.06 -0.67 0.80 16 33 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.16 2.85 6.87 -2.91 -0.02 2.83 16 35 H 0.07 1.48 7.82 -2.39 -0.02 1.46 16 36 H 0.13 2.14 7.46 -2.39 -0.02 2.12 16 37 H 0.06 1.54 7.67 -2.39 -0.02 1.52 16 38 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.04 1.97 7.84 -2.39 -0.02 1.95 16 40 H 0.05 2.32 7.99 -2.39 -0.02 2.30 16 41 H 0.37 19.31 7.46 -74.05 -0.55 18.76 16 42 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 43 H 0.05 2.25 7.96 -2.39 -0.02 2.24 16 44 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 45 H 0.17 4.59 8.02 -2.91 -0.02 4.57 16 Total: -1.00 -67.60 372.37 -1.24 -68.84 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.17 Total: 29.44 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.01 Total: -6.62 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -4.49 Total: -67.32 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -2.61 Total: -68.39 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -67.60 -1.24 -68.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829982867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.259 kcal (2) G-P(sol) polarization free energy of solvation -67.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds