Wall clock time and date at job start Wed Apr 1 2020 04:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47360 * 2 1 4 4 C 1.50699 * 109.47234 * 239.99684 * 2 1 3 5 5 H 1.07999 * 119.99974 * 239.99904 * 4 2 1 6 6 C 1.37877 * 119.99982 * 60.00141 * 4 2 1 7 7 N 1.31515 * 120.00037 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00203 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47009 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46966 * 119.99904 * 8 6 4 11 11 H 1.48498 * 109.47110 * 240.00281 * 8 6 4 12 12 C 1.53001 * 109.47154 * 119.99953 * 2 1 3 13 13 S 1.81408 * 109.47023 * 299.99980 * 12 2 1 14 14 O 1.42090 * 110.54234 * 68.37620 * 13 12 2 15 15 O 1.42097 * 110.54126 * 291.62463 * 13 12 2 16 16 N 1.65604 * 104.45024 * 180.02562 * 13 12 2 17 17 C 1.46497 * 120.00249 * 64.99392 * 16 13 12 18 18 C 1.52999 * 109.47168 * 165.00038 * 17 16 13 19 19 H 1.08998 * 109.47158 * 55.00272 * 18 17 16 20 20 C 1.52999 * 109.47157 * 295.00380 * 18 17 16 21 21 O 1.42903 * 109.47256 * 65.00201 * 20 18 17 22 22 C 1.52996 * 109.47324 * 175.00432 * 18 17 16 23 23 C 1.50694 * 109.47341 * 185.00242 * 22 18 17 24 24 C 1.34519 * 125.79158 * 89.99927 * 23 22 18 25 25 C 1.41382 * 106.84110 * 180.02562 * 24 23 22 26 26 C 1.34511 * 106.84373 * 359.97438 * 25 24 23 27 27 O 1.34304 * 108.42005 * 359.73800 * 26 25 24 28 28 H 1.09000 * 109.47394 * 300.00322 * 1 2 3 29 29 H 1.09001 * 109.47067 * 60.00401 * 1 2 3 30 30 H 1.09001 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47575 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46703 * 299.99821 * 3 2 1 33 33 H 1.09000 * 109.47130 * 59.99516 * 3 2 1 34 34 H 0.96992 * 120.00160 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47473 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47622 * 59.99918 * 12 2 1 37 37 H 0.97005 * 119.99501 * 245.00180 * 16 13 12 38 38 H 1.09009 * 109.46758 * 45.00356 * 17 16 13 39 39 H 1.08991 * 109.47474 * 285.00567 * 17 16 13 40 40 H 1.08997 * 109.47286 * 304.99761 * 20 18 17 41 41 H 1.09008 * 109.47201 * 184.99542 * 20 18 17 42 42 H 0.96700 * 114.00311 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.47204 * 305.00267 * 22 18 17 44 44 H 1.09004 * 109.47325 * 64.99999 * 22 18 17 45 45 H 1.07997 * 126.57894 * 0.03078 * 24 23 22 46 46 H 1.08001 * 126.57529 * 179.97438 * 25 24 23 47 47 H 1.08002 * 125.79107 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1454 -2.2879 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0182 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0541 -0.7399 3.9937 17 6 3.5025 -0.7963 4.2055 18 6 3.7923 -1.3321 5.6090 19 1 3.2962 -2.2936 5.7404 20 6 3.2691 -0.3415 6.6511 21 8 1.8449 -0.2647 6.5624 22 6 5.3017 -1.5086 5.7860 23 6 5.5793 -2.1506 7.1208 24 6 5.6630 -3.4724 7.3558 25 6 5.9345 -3.6269 8.7347 26 6 6.0012 -2.3903 9.2597 27 8 5.7913 -1.4999 8.2764 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 0.7082 1.1607 -3.4844 35 1 3.1300 -0.7217 1.2491 36 1 1.6767 -1.7489 1.2493 37 1 1.4573 -1.2145 4.5934 38 1 3.9237 0.2041 4.1043 39 1 3.9527 -1.4566 3.4644 40 1 3.6984 0.6428 6.4645 41 1 3.5533 -0.6789 7.6479 42 1 1.4438 0.3465 7.1953 43 1 5.6890 -2.1441 4.9896 44 1 5.7890 -0.5345 5.7429 45 1 5.5454 -4.2638 6.6304 46 1 6.0637 -4.5590 9.2647 47 1 6.1955 -2.1534 10.2954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830599520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:39 Heat of formation + Delta-G solvation = -116.470170 kcal Electronic energy + Delta-G solvation = -29158.719038 eV Core-core repulsion = 25049.451317 eV Total energy + Delta-G solvation = -4109.267721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.87541 -38.28733 -36.39992 -36.21846 -35.43116 -35.16181 -33.67211 -33.01157 -31.63179 -29.65537 -26.57326 -26.04004 -25.67300 -25.41096 -25.16154 -22.07288 -21.25135 -20.47702 -19.47548 -18.64064 -17.70756 -17.53638 -17.00161 -16.42035 -16.03566 -15.91718 -15.74425 -15.12111 -14.76998 -14.72022 -14.54671 -14.11840 -13.39300 -13.18226 -13.12655 -13.02851 -12.92996 -12.90082 -12.69163 -12.46225 -12.29003 -11.98381 -11.71629 -11.34524 -11.24874 -11.11729 -11.05021 -10.92394 -10.82386 -10.64904 -10.31804 -10.23392 -10.22888 -10.08716 -10.03781 -9.61299 -9.54298 -9.07161 -8.75235 -8.60082 -8.38033 -6.01035 -4.12822 0.99339 1.42865 2.32513 2.67786 3.26101 3.34478 3.36330 3.37456 3.96167 4.27651 4.36687 4.46756 4.54623 4.67748 4.74419 4.79625 4.93422 4.98041 5.15564 5.21603 5.24514 5.33882 5.35510 5.45117 5.52331 5.62756 5.66009 5.72270 5.77821 5.83690 5.92406 6.16046 6.23069 6.43331 6.74703 6.83785 6.84241 6.95940 7.08313 7.35201 7.38943 7.54228 7.58219 7.70506 8.01722 8.13262 8.36336 8.85972 9.52435 11.00288 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.002587 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.588498 B =10821.774149 C =11814.844886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.500 4.500 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.587 4.587 13 S 2.599 3.401 14 O -0.967 6.967 15 O -0.968 6.968 16 N -1.116 6.116 17 C 0.125 3.875 18 C -0.091 4.091 19 H 0.091 0.909 20 C 0.082 3.918 21 O -0.565 6.565 22 C -0.037 4.037 23 C -0.006 4.006 24 C -0.209 4.209 25 C -0.213 4.213 26 C -0.046 4.046 27 O -0.176 6.176 28 H 0.028 0.972 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.418 0.582 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.379 0.621 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.646 -6.258 21.858 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.720 4.720 13 S 2.696 3.304 14 O -0.957 6.957 15 O -0.958 6.958 16 N -0.876 5.876 17 C -0.002 4.002 18 C -0.111 4.111 19 H 0.109 0.891 20 C 0.004 3.996 21 O -0.370 6.370 22 C -0.075 4.075 23 C -0.056 4.056 24 C -0.229 4.229 25 C -0.232 4.232 26 C -0.114 4.114 27 O -0.072 6.072 28 H 0.047 0.953 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.254 0.746 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.226 0.774 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.166 0.834 46 H 0.164 0.836 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 9.240 -5.384 21.270 23.807 hybrid contribution 0.520 -1.193 -0.238 1.323 sum 9.760 -6.576 21.032 24.101 Atomic orbital electron populations 1.22273 0.96966 1.00620 1.02312 1.17917 0.92807 0.92189 0.89146 1.22269 0.99635 0.97863 1.02344 1.20992 1.31531 1.11991 0.89442 0.92300 1.24947 0.94948 0.95003 0.98934 1.69814 1.36393 1.22672 1.23311 0.86489 0.78617 0.79609 0.82970 1.19859 1.20990 1.20985 1.30566 1.11109 1.12946 1.17347 1.05395 0.74350 0.75204 0.75450 1.93540 1.29648 1.86692 1.85810 1.93516 1.78201 1.38510 1.85607 1.55628 1.13439 1.71530 1.46970 1.21177 0.81675 1.01760 0.95613 1.21414 0.94249 1.00571 0.94893 0.89064 1.22201 0.81716 0.98296 0.97409 1.86425 1.19583 1.68200 1.62830 1.20151 0.95510 1.02480 0.89342 1.22374 1.04745 0.91311 0.87219 1.21639 1.08349 0.95930 0.96936 1.21850 1.07791 0.98524 0.95029 1.24014 1.06292 0.87648 0.93440 1.84036 1.69177 1.37563 1.16463 0.95322 0.88702 0.94503 0.94541 0.88737 0.95263 0.92837 0.86638 0.86385 0.74634 0.90296 0.91622 0.93202 0.93644 0.77409 0.87438 0.89147 0.83377 0.83558 0.78262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 7.77 37.16 0.29 -3.83 16 2 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 3 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 4 C -0.50 -13.19 8.01 -34.44 -0.28 -13.47 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -24.30 9.35 55.43 0.52 -23.78 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.59 -11.51 5.01 37.16 0.19 -11.33 16 13 S 2.60 49.16 4.49 -107.50 -0.48 48.68 16 14 O -0.97 -21.06 15.70 -57.54 -0.90 -21.96 16 15 O -0.97 -20.56 15.11 -57.54 -0.87 -21.43 16 16 N -1.12 -15.82 4.95 -10.61 -0.05 -15.88 16 17 C 0.12 1.41 5.52 -4.04 -0.02 1.39 16 18 C -0.09 -0.84 2.24 -90.62 -0.20 -1.04 16 19 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 20 C 0.08 0.79 6.32 37.16 0.23 1.02 16 21 O -0.57 -6.10 11.20 -35.23 -0.39 -6.50 16 22 C -0.04 -0.27 5.22 -27.89 -0.15 -0.42 16 23 C -0.01 -0.06 5.73 -35.63 -0.20 -0.26 16 24 C -0.21 -1.78 10.81 -39.70 -0.43 -2.21 16 25 C -0.21 -1.65 10.91 -39.70 -0.43 -2.08 16 26 C -0.05 -0.34 12.09 29.41 0.36 0.02 16 27 O -0.18 -1.62 9.94 5.69 0.06 -1.56 16 28 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 29 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 33 H 0.03 0.69 5.46 -51.93 -0.28 0.41 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 36 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 37 H 0.42 5.64 7.20 -34.47 -0.25 5.40 16 38 H 0.08 0.92 7.69 -51.92 -0.40 0.53 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.42 6.67 -51.92 -0.35 0.07 16 42 H 0.38 2.71 9.12 45.56 0.42 3.12 16 43 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -34.70 381.92 -8.32 -43.01 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.39 Total: 10.44 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: -0.53 Total: -32.46 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.47 Total: -39.66 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -2.11 Total: -51.45 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 49.16 SS G_CDS: -0.48 Total: 48.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.70 -8.32 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830599520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.458 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds