Wall clock time and date at job start Wed Apr 1 2020 04:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 C 1.50696 * 109.47360 * 240.00343 * 2 1 3 5 5 H 1.08004 * 120.00213 * 240.00088 * 4 2 1 6 6 C 1.37881 * 120.00316 * 59.99522 * 4 2 1 7 7 N 1.31513 * 119.99545 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00287 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47119 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47453 * 119.99751 * 8 6 4 11 11 H 1.48494 * 109.47315 * 239.99904 * 8 6 4 12 12 C 1.52998 * 109.47614 * 119.99871 * 2 1 3 13 13 S 1.81396 * 109.47058 * 300.00387 * 12 2 1 14 14 O 1.42102 * 110.54688 * 68.37155 * 13 12 2 15 15 O 1.42101 * 110.54061 * 291.62002 * 13 12 2 16 16 N 1.65607 * 104.44947 * 179.97438 * 13 12 2 17 17 C 1.46493 * 120.00167 * 64.99813 * 16 13 12 18 18 C 1.52996 * 109.47246 * 165.00058 * 17 16 13 19 19 H 1.08998 * 109.47134 * 305.00371 * 18 17 16 20 20 C 1.52999 * 109.46961 * 65.00128 * 18 17 16 21 21 O 1.42903 * 109.47256 * 185.00371 * 20 18 17 22 22 C 1.52999 * 109.47324 * 185.00196 * 18 17 16 23 23 C 1.50702 * 109.47405 * 175.00381 * 22 18 17 24 24 C 1.34507 * 125.79242 * 89.99187 * 23 22 18 25 25 C 1.41387 * 106.84219 * 180.02562 * 24 23 22 26 26 C 1.34519 * 106.83603 * 0.02562 * 25 24 23 27 27 O 1.34304 * 125.78209 * 269.69183 * 23 22 18 28 28 H 1.08995 * 109.47020 * 299.99678 * 1 2 3 29 29 H 1.08998 * 109.47359 * 60.00245 * 1 2 3 30 30 H 1.08997 * 109.46803 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47105 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46790 * 300.00104 * 3 2 1 33 33 H 1.09001 * 109.46773 * 59.99834 * 3 2 1 34 34 H 0.97000 * 119.99815 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47377 * 179.97438 * 12 2 1 36 36 H 1.09008 * 109.46730 * 60.00223 * 12 2 1 37 37 H 0.97002 * 119.99462 * 244.99815 * 16 13 12 38 38 H 1.09000 * 109.47077 * 44.99910 * 17 16 13 39 39 H 1.09004 * 109.47120 * 285.00381 * 17 16 13 40 40 H 1.08997 * 109.47286 * 64.99932 * 20 18 17 41 41 H 1.09008 * 109.47201 * 304.99712 * 20 18 17 42 42 H 0.96700 * 114.00311 * 180.02562 * 21 20 18 43 43 H 1.09009 * 109.47022 * 294.99953 * 22 18 17 44 44 H 1.08991 * 109.47355 * 54.99830 * 22 18 17 45 45 H 1.07997 * 126.58146 * 359.97373 * 24 23 22 46 46 H 1.07997 * 126.58338 * 179.97438 * 25 24 23 47 47 H 1.08003 * 125.78442 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1456 -2.2875 -3.6039 10 1 1.1662 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4100 2.8543 16 7 2.0532 -0.7408 3.9936 17 6 3.5015 -0.7981 4.2059 18 6 3.7904 -1.3345 5.6093 19 1 3.2669 -0.7253 6.3460 20 6 3.3089 -2.7832 5.7106 21 8 3.4718 -3.2466 7.0526 22 6 5.2957 -1.2775 5.8773 23 6 5.5686 -1.6897 7.3009 24 6 5.8070 -2.9437 7.7248 25 6 6.0081 -2.8723 9.1225 26 6 5.8799 -1.5789 9.4691 27 8 5.6204 -0.8662 8.3606 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7088 1.1614 -3.4844 35 1 3.1301 -0.7216 1.2489 36 1 1.6768 -1.7489 1.2492 37 1 1.4559 -1.2152 4.5929 38 1 3.9233 0.2019 4.1052 39 1 3.9516 -1.4585 3.4647 40 1 3.8943 -3.4086 5.0367 41 1 2.2561 -2.8364 5.4332 42 1 3.1865 -4.1601 7.1907 43 1 5.8117 -1.9556 5.1974 44 1 5.6548 -0.2608 5.7182 45 1 5.8380 -3.8344 7.1148 46 1 6.2226 -3.6979 9.7849 47 1 5.9756 -1.1803 10.4683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830599521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:43 Heat of formation + Delta-G solvation = -111.587408 kcal Electronic energy + Delta-G solvation = -29109.502138 eV Core-core repulsion = 25000.446149 eV Total energy + Delta-G solvation = -4109.055989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56221 -38.37559 -36.57387 -36.29942 -35.73383 -35.30303 -33.42155 -32.75574 -31.69109 -29.61997 -26.67345 -26.10502 -25.73711 -25.41340 -25.20861 -21.78617 -21.13186 -20.32025 -19.61546 -18.83662 -17.88793 -17.41479 -17.02907 -16.22671 -16.10989 -15.90160 -15.66825 -15.28493 -14.90192 -14.76794 -14.51718 -14.21459 -13.53521 -13.22421 -13.07292 -13.01243 -12.83706 -12.73037 -12.54852 -12.52827 -12.09759 -12.07186 -11.72185 -11.49039 -11.43384 -11.10701 -11.08823 -10.95458 -10.93680 -10.73036 -10.39073 -10.34610 -10.30038 -10.13984 -9.71731 -9.68072 -9.65816 -9.30874 -8.69618 -8.42912 -8.32108 -6.05986 -4.18050 0.82413 1.74337 2.66138 2.96037 3.18890 3.22856 3.31531 3.33564 3.91369 4.25530 4.35236 4.46777 4.50514 4.67974 4.79223 4.90994 5.02097 5.05733 5.13827 5.19409 5.26365 5.26954 5.32888 5.46735 5.53170 5.66229 5.67085 5.76905 5.85392 5.91828 6.00285 6.12950 6.34616 6.51568 6.67706 6.77478 6.88522 6.98612 7.07115 7.14801 7.29414 7.40306 7.48146 7.65560 7.96128 8.07306 8.30451 8.80681 9.47548 10.95356 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.002461 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.924210 B =11376.418181 C =11901.524377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.581 4.581 13 S 2.593 3.407 14 O -0.964 6.964 15 O -0.963 6.963 16 N -1.132 6.132 17 C 0.120 3.880 18 C -0.091 4.091 19 H 0.091 0.909 20 C 0.074 3.926 21 O -0.555 6.555 22 C -0.034 4.034 23 C 0.000 4.000 24 C -0.168 4.168 25 C -0.216 4.216 26 C -0.051 4.051 27 O -0.179 6.179 28 H 0.028 0.972 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.411 0.589 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.370 0.630 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.698 -8.583 19.523 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 C -0.222 4.222 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.715 4.715 13 S 2.691 3.309 14 O -0.955 6.955 15 O -0.953 6.953 16 N -0.889 5.889 17 C -0.007 4.007 18 C -0.110 4.110 19 H 0.109 0.891 20 C -0.004 4.004 21 O -0.360 6.360 22 C -0.071 4.071 23 C -0.050 4.050 24 C -0.187 4.187 25 C -0.236 4.236 26 C -0.119 4.119 27 O -0.076 6.076 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.244 0.756 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.217 0.783 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.385 -6.658 19.439 22.193 hybrid contribution 0.195 -2.140 -0.812 2.297 sum 8.580 -8.798 18.628 22.316 Atomic orbital electron populations 1.22277 0.96933 1.00626 1.02354 1.17934 0.92823 0.92233 0.89074 1.22279 0.99714 0.97795 1.02392 1.20970 1.31667 1.12054 0.89375 0.92275 1.24948 0.94907 0.94987 0.98966 1.69812 1.36320 1.22582 1.23394 0.86480 0.78627 0.79600 0.82922 1.19862 1.20975 1.20946 1.30521 1.11233 1.12860 1.16890 1.05639 0.74404 0.75241 0.75602 1.93557 1.29507 1.86659 1.85763 1.93542 1.78112 1.38135 1.85497 1.55912 1.13849 1.71364 1.47812 1.21273 0.80877 1.02482 0.96021 1.21404 0.95810 0.96404 0.97430 0.89082 1.22225 0.99496 0.94349 0.84292 1.86819 1.87616 1.33455 1.28145 1.20077 0.95530 1.03651 0.87882 1.22012 1.05155 0.89020 0.88848 1.21206 1.05908 0.96947 0.94640 1.21748 1.08557 0.97077 0.96181 1.23853 1.06517 0.91279 0.90243 1.83983 1.69821 1.38309 1.15472 0.95358 0.88641 0.94484 0.94451 0.88667 0.95286 0.92781 0.86427 0.86277 0.75563 0.89248 0.91206 0.93192 0.93349 0.78297 0.88601 0.89512 0.84345 0.84196 0.78822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 7.78 37.16 0.29 -3.70 16 2 C 0.08 1.93 0.52 -155.66 -0.08 1.85 16 3 C -0.16 -3.96 7.77 37.16 0.29 -3.67 16 4 C -0.50 -12.86 8.01 -34.44 -0.28 -13.14 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 6 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 7 N -0.88 -23.83 9.35 55.43 0.52 -23.31 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C -0.58 -10.74 5.01 37.16 0.19 -10.55 16 13 S 2.59 45.87 4.49 -107.50 -0.48 45.38 16 14 O -0.96 -19.74 15.70 -57.54 -0.90 -20.65 16 15 O -0.96 -19.57 15.12 -57.54 -0.87 -20.44 16 16 N -1.13 -14.15 5.74 -10.62 -0.06 -14.21 16 17 C 0.12 1.23 5.52 -4.05 -0.02 1.21 16 18 C -0.09 -0.83 2.33 -90.62 -0.21 -1.04 16 19 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 20 C 0.07 0.58 6.31 37.16 0.23 0.82 16 21 O -0.56 -4.53 9.26 -35.23 -0.33 -4.85 16 22 C -0.03 -0.29 5.22 -27.88 -0.15 -0.43 16 23 C 0.00 0.00 5.62 -35.63 -0.20 -0.20 16 24 C -0.17 -1.60 7.97 -39.70 -0.32 -1.92 16 25 C -0.22 -1.97 10.91 -39.70 -0.43 -2.40 16 26 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 27 O -0.18 -2.07 10.65 5.70 0.06 -2.01 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 29 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 33 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 36 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 37 H 0.41 4.44 7.34 -34.47 -0.25 4.19 16 38 H 0.09 0.96 7.70 -51.93 -0.40 0.56 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.37 6.79 -51.92 -0.35 0.02 16 42 H 0.37 1.71 9.12 45.56 0.42 2.12 16 43 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.14 1.12 7.90 -52.49 -0.41 0.70 16 46 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.20 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -33.93 378.73 -8.19 -42.13 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.39 Total: 8.67 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: -0.42 Total: -31.71 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.46 Total: -37.52 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -2.04 Total: -47.95 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 45.87 SS G_CDS: -0.48 Total: 45.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.93 -8.19 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830599521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.460 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds