Wall clock time and date at job start Wed Apr 1 2020 04:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 C 1.50696 * 109.47360 * 240.00343 * 2 1 3 5 5 H 1.08004 * 120.00213 * 240.00088 * 4 2 1 6 6 C 1.37881 * 120.00316 * 59.99522 * 4 2 1 7 7 N 1.31513 * 119.99545 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00287 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47119 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47453 * 119.99751 * 8 6 4 11 11 H 1.48494 * 109.47315 * 239.99904 * 8 6 4 12 12 C 1.52998 * 109.47614 * 119.99871 * 2 1 3 13 13 S 1.81396 * 109.47058 * 300.00387 * 12 2 1 14 14 O 1.42102 * 110.54688 * 68.37155 * 13 12 2 15 15 O 1.42101 * 110.54061 * 291.62002 * 13 12 2 16 16 N 1.65607 * 104.44947 * 179.97438 * 13 12 2 17 17 C 1.46493 * 120.00167 * 64.99813 * 16 13 12 18 18 C 1.52996 * 109.47246 * 165.00058 * 17 16 13 19 19 H 1.08998 * 109.47134 * 305.00371 * 18 17 16 20 20 C 1.52999 * 109.46961 * 65.00128 * 18 17 16 21 21 O 1.42903 * 109.47256 * 185.00371 * 20 18 17 22 22 C 1.52999 * 109.47324 * 185.00196 * 18 17 16 23 23 C 1.50702 * 109.47405 * 175.00381 * 22 18 17 24 24 C 1.34507 * 125.79242 * 89.99187 * 23 22 18 25 25 C 1.41387 * 106.84219 * 180.02562 * 24 23 22 26 26 C 1.34519 * 106.83603 * 0.02562 * 25 24 23 27 27 O 1.34304 * 125.78209 * 269.69183 * 23 22 18 28 28 H 1.08995 * 109.47020 * 299.99678 * 1 2 3 29 29 H 1.08998 * 109.47359 * 60.00245 * 1 2 3 30 30 H 1.08997 * 109.46803 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47105 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46790 * 300.00104 * 3 2 1 33 33 H 1.09001 * 109.46773 * 59.99834 * 3 2 1 34 34 H 0.97000 * 119.99815 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47377 * 179.97438 * 12 2 1 36 36 H 1.09008 * 109.46730 * 60.00223 * 12 2 1 37 37 H 0.97002 * 119.99462 * 244.99815 * 16 13 12 38 38 H 1.09000 * 109.47077 * 44.99910 * 17 16 13 39 39 H 1.09004 * 109.47120 * 285.00381 * 17 16 13 40 40 H 1.08997 * 109.47286 * 64.99932 * 20 18 17 41 41 H 1.09008 * 109.47201 * 304.99712 * 20 18 17 42 42 H 0.96700 * 114.00311 * 180.02562 * 21 20 18 43 43 H 1.09009 * 109.47022 * 294.99953 * 22 18 17 44 44 H 1.08991 * 109.47355 * 54.99830 * 22 18 17 45 45 H 1.07997 * 126.58146 * 359.97373 * 24 23 22 46 46 H 1.07997 * 126.58338 * 179.97438 * 25 24 23 47 47 H 1.08003 * 125.78442 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1456 -2.2875 -3.6039 10 1 1.1662 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4100 2.8543 16 7 2.0532 -0.7408 3.9936 17 6 3.5015 -0.7981 4.2059 18 6 3.7904 -1.3345 5.6093 19 1 3.2669 -0.7253 6.3460 20 6 3.3089 -2.7832 5.7106 21 8 3.4718 -3.2466 7.0526 22 6 5.2957 -1.2775 5.8773 23 6 5.5686 -1.6897 7.3009 24 6 5.8070 -2.9437 7.7248 25 6 6.0081 -2.8723 9.1225 26 6 5.8799 -1.5789 9.4691 27 8 5.6204 -0.8662 8.3606 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7088 1.1614 -3.4844 35 1 3.1301 -0.7216 1.2489 36 1 1.6768 -1.7489 1.2492 37 1 1.4559 -1.2152 4.5929 38 1 3.9233 0.2019 4.1052 39 1 3.9516 -1.4585 3.4647 40 1 3.8943 -3.4086 5.0367 41 1 2.2561 -2.8364 5.4332 42 1 3.1865 -4.1601 7.1907 43 1 5.8117 -1.9556 5.1974 44 1 5.6548 -0.2608 5.7182 45 1 5.8380 -3.8344 7.1148 46 1 6.2226 -3.6979 9.7849 47 1 5.9756 -1.1803 10.4683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830599521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:41 Heat of formation + Delta-G solvation = -136.593478 kcal Electronic energy + Delta-G solvation = -29110.586483 eV Core-core repulsion = 25000.446149 eV Total energy + Delta-G solvation = -4110.140334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.26176 -39.07247 -38.09804 -38.06699 -36.87686 -36.44997 -34.21191 -33.60903 -33.47931 -30.35805 -28.28249 -27.66448 -27.23208 -26.72125 -26.16272 -22.47761 -21.86342 -21.39285 -20.93892 -20.21297 -18.85640 -18.42004 -17.94069 -17.69682 -17.18468 -16.97611 -16.80987 -16.56783 -16.31662 -15.89563 -15.42783 -15.02559 -14.86135 -14.65146 -14.39953 -14.24453 -13.84221 -13.76240 -13.59380 -13.49949 -13.35358 -13.11222 -12.97308 -12.89256 -12.85077 -12.72507 -12.47474 -12.43476 -12.24792 -12.16496 -12.08636 -11.91714 -11.61995 -11.53627 -11.32507 -10.93856 -10.65937 -10.40267 -10.36661 -10.28530 -9.00213 -8.01043 -6.19337 -0.58317 1.04669 1.44474 1.47901 1.56923 1.90382 2.02658 2.35178 2.45854 2.89366 3.21621 3.28046 3.40461 3.76991 3.87569 4.03703 4.06603 4.23130 4.29439 4.38756 4.40969 4.46204 4.61720 4.62432 4.65291 4.71722 4.78546 4.87823 4.89822 4.91473 5.00538 5.03017 5.11726 5.14614 5.23582 5.30204 5.42236 5.47735 5.53426 5.67532 5.87817 6.00142 6.09796 6.14725 6.36447 6.45880 6.86392 7.01393 7.49122 8.98944 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.002461 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.924210 B =11376.418181 C =11901.524377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.068 3.932 3 C -0.161 4.161 4 C -0.512 4.512 5 H 0.066 0.934 6 C 0.015 3.985 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.583 4.583 13 S 2.612 3.388 14 O -0.996 6.996 15 O -0.993 6.993 16 N -1.115 6.115 17 C 0.110 3.890 18 C -0.083 4.083 19 H 0.069 0.931 20 C 0.074 3.926 21 O -0.571 6.571 22 C -0.034 4.034 23 C -0.022 4.022 24 C -0.168 4.168 25 C -0.227 4.227 26 C -0.063 4.063 27 O -0.205 6.205 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.421 0.579 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.385 0.615 43 H 0.118 0.882 44 H 0.085 0.915 45 H 0.153 0.847 46 H 0.158 0.842 47 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -10.832 20.314 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.066 3.934 3 C -0.219 4.219 4 C -0.551 4.551 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.212 1.212 12 C -0.716 4.716 13 S 2.710 3.290 14 O -0.986 6.986 15 O -0.982 6.982 16 N -0.877 5.877 17 C -0.015 4.015 18 C -0.103 4.103 19 H 0.087 0.913 20 C -0.004 4.004 21 O -0.378 6.378 22 C -0.071 4.071 23 C -0.071 4.071 24 C -0.187 4.187 25 C -0.246 4.246 26 C -0.130 4.130 27 O -0.103 6.103 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.257 0.743 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.234 0.766 43 H 0.136 0.864 44 H 0.103 0.897 45 H 0.170 0.830 46 H 0.176 0.824 47 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 9.855 -8.928 20.237 24.215 hybrid contribution -0.242 -1.460 -0.947 1.757 sum 9.613 -10.388 19.290 23.926 Atomic orbital electron populations 1.22221 0.98002 1.00496 1.01230 1.17923 0.92172 0.92164 0.91107 1.22215 0.99983 0.98431 1.01244 1.21336 1.31368 1.12198 0.90229 0.91538 1.25695 0.95284 0.95675 1.01760 1.69961 1.37372 1.23808 1.23688 0.85565 0.77953 0.78771 0.79669 1.18680 1.21259 1.21162 1.30430 1.12911 1.13387 1.14856 1.04750 0.73436 0.74881 0.75951 1.93507 1.31700 1.87075 1.86335 1.93504 1.78441 1.40240 1.86041 1.55409 1.15247 1.70806 1.46201 1.21568 0.79131 1.03136 0.97689 1.21281 0.96135 0.97053 0.95869 0.91297 1.22235 0.99853 0.93643 0.84623 1.86779 1.87822 1.34847 1.28356 1.20158 0.95167 1.04243 0.87581 1.22386 1.06039 0.89410 0.89309 1.21447 1.05164 0.97102 0.95035 1.22085 1.08385 0.97638 0.96498 1.24505 1.06039 0.91632 0.90825 1.83969 1.70441 1.39445 1.16401 0.95005 0.91240 0.94033 0.93825 0.91316 0.94928 0.93055 0.83899 0.84115 0.74272 0.89902 0.88246 0.91263 0.93209 0.76562 0.86383 0.89668 0.82954 0.82387 0.76249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.88 7.78 71.98 0.56 -7.32 16 2 C 0.07 3.17 0.52 -52.93 -0.03 3.15 16 3 C -0.16 -7.78 7.77 71.98 0.56 -7.22 16 4 C -0.51 -25.68 8.01 25.60 0.21 -25.47 16 5 H 0.07 3.16 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.78 5.15 84.66 0.44 1.21 16 7 N -0.91 -49.81 9.35 21.45 0.20 -49.61 16 8 Si 0.95 41.24 29.54 68.60 2.03 43.27 16 9 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 C -0.58 -20.19 5.01 71.98 0.36 -19.83 16 13 S 2.61 88.92 4.49 -56.49 -0.25 88.67 16 14 O -1.00 -40.05 15.70 -127.65 -2.00 -42.06 16 15 O -0.99 -39.67 15.12 -127.65 -1.93 -41.60 16 16 N -1.11 -25.52 5.74 -187.50 -1.08 -26.60 16 17 C 0.11 1.99 5.52 86.38 0.48 2.46 16 18 C -0.08 -1.36 2.33 -10.80 -0.03 -1.38 16 19 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 20 C 0.07 0.96 6.31 71.98 0.45 1.42 16 21 O -0.57 -8.03 9.26 -148.98 -1.38 -9.41 16 22 C -0.03 -0.51 5.22 29.85 0.16 -0.36 16 23 C -0.02 -0.43 5.62 24.83 0.14 -0.29 16 24 C -0.17 -2.88 7.97 22.19 0.18 -2.71 16 25 C -0.23 -3.73 10.91 22.19 0.24 -3.49 16 26 C -0.06 -1.10 12.09 66.97 0.81 -0.29 16 27 O -0.20 -4.62 10.65 -2.52 -0.03 -4.64 16 28 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 29 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 33 H 0.03 1.51 5.46 -2.39 -0.01 1.49 16 34 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 36 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 37 H 0.42 8.24 7.34 -96.74 -0.71 7.53 16 38 H 0.08 1.64 7.70 -2.39 -0.02 1.62 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.05 0.62 6.79 -2.38 -0.02 0.61 16 42 H 0.39 2.62 9.12 -74.06 -0.68 1.94 16 43 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.15 2.05 7.90 -2.91 -0.02 2.03 16 46 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 47 H 0.22 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -73.14 378.73 -0.31 -73.45 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.39 Total: 28.65 kcal Atomic # 6 Polarization: -64.64 SS G_CDS: 4.52 Total: -60.12 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -0.88 Total: -76.21 kcal Atomic # 8 Polarization: -92.37 SS G_CDS: -5.34 Total: -97.71 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 88.92 SS G_CDS: -0.25 Total: 88.67 kcal Total: -73.14 -0.31 -73.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830599521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.146 kcal (2) G-P(sol) polarization free energy of solvation -73.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds