Wall clock time and date at job start Wed Apr 1 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99924 * 2 1 4 4 H 1.48498 * 109.46898 * 269.99816 * 3 2 1 5 5 H 1.48499 * 109.46936 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.46925 * 150.00029 * 3 2 1 7 7 C 1.37874 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99846 * 172.23666 * 7 2 1 9 9 C 1.50693 * 120.00327 * 352.23443 * 7 2 1 10 10 C 1.53004 * 115.55085 * 84.78416 * 9 7 2 11 11 S 1.81401 * 109.47124 * 65.19431 * 10 9 7 12 12 O 1.42104 * 110.54076 * 62.18388 * 11 10 9 13 13 O 1.42097 * 110.54368 * 285.43706 * 11 10 9 14 14 N 1.65598 * 104.44942 * 173.80914 * 11 10 9 15 15 C 1.46499 * 119.99908 * 64.72687 * 14 11 10 16 16 C 1.50704 * 109.47081 * 165.27477 * 15 14 11 17 17 O 1.20824 * 119.99694 * 359.97438 * 16 15 14 18 18 O 1.34224 * 119.99850 * 179.97438 * 16 15 14 19 19 C 1.45198 * 116.99907 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47382 * 270.00299 * 19 18 16 21 21 C 1.52993 * 109.47388 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47488 * 59.99500 * 21 20 19 23 23 C 1.52997 * 109.47214 * 300.00606 * 22 21 20 24 24 C 1.52999 * 109.47448 * 59.99652 * 23 22 21 25 25 C 1.53000 * 117.50236 * 230.45593 * 9 7 2 26 26 C 1.53005 * 117.50046 * 299.11190 * 9 7 2 27 27 H 0.97003 * 120.00122 * 5.03511 * 1 2 3 28 28 H 1.08992 * 109.46973 * 305.19547 * 10 9 7 29 29 H 1.09002 * 109.47083 * 185.19646 * 10 9 7 30 30 H 0.97001 * 119.99700 * 245.00306 * 14 11 10 31 31 H 1.08998 * 109.46807 * 285.27522 * 15 14 11 32 32 H 1.09001 * 109.46891 * 45.27624 * 15 14 11 33 33 H 1.08996 * 109.47162 * 30.00257 * 19 18 16 34 34 H 1.09010 * 109.47007 * 300.00178 * 20 19 18 35 35 H 1.08994 * 109.47320 * 59.99659 * 20 19 18 36 36 H 1.09010 * 109.47016 * 299.99957 * 21 20 19 37 37 H 1.08999 * 109.47368 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47438 * 179.97438 * 22 21 20 39 39 H 1.09010 * 109.46619 * 60.00214 * 22 21 20 40 40 H 1.08996 * 109.46938 * 299.99453 * 23 22 21 41 41 H 1.09007 * 109.47196 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47428 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47072 * 59.99563 * 24 23 22 44 44 H 1.08999 * 117.50399 * 215.00328 * 25 9 7 45 45 H 1.09006 * 117.49780 * 0.02562 * 25 9 7 46 46 H 1.09000 * 117.49458 * 359.97438 * 26 9 7 47 47 H 1.09000 * 117.49939 * 144.97104 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0771 -1.1984 -0.1258 9 6 1.2614 -2.4930 0.1774 10 6 0.6670 -3.0924 -1.0987 11 16 2.0072 -3.5642 -2.2264 12 8 2.8269 -4.5637 -1.6361 13 8 2.5779 -2.4124 -2.8321 14 7 1.2440 -4.3447 -3.4716 15 6 0.3133 -3.6126 -4.3342 16 6 0.0393 -4.4199 -5.5769 17 8 0.5676 -5.4961 -5.7268 18 8 -0.7917 -3.9433 -6.5171 19 6 -1.0085 -4.7745 -7.6877 20 6 0.0279 -4.4279 -8.7585 21 6 -0.2010 -5.3032 -9.9922 22 6 -1.6064 -5.0518 -10.5424 23 6 -2.6428 -5.3984 -9.4716 24 6 -2.4139 -4.5230 -8.2379 25 6 1.7803 -3.4649 1.2391 26 6 0.4826 -2.6898 1.4797 27 1 -0.4850 0.8368 -0.0737 28 1 0.0275 -2.3544 -1.5829 29 1 0.0776 -3.9738 -0.8458 30 1 1.4101 -5.2876 -3.6273 31 1 -0.6205 -3.4417 -3.7986 32 1 0.7530 -2.6549 -4.6127 33 1 -0.9085 -5.8242 -7.4117 34 1 -0.0721 -3.3781 -9.0346 35 1 1.0291 -4.6066 -8.3664 36 1 -0.1013 -6.3531 -9.7164 37 1 0.5371 -5.0559 -10.7552 38 1 -1.7693 -5.6751 -11.4216 39 1 -1.7061 -4.0019 -10.8182 40 1 -2.5431 -6.4482 -9.1959 41 1 -3.6440 -5.2189 -9.8635 42 1 -3.1520 -4.7703 -7.4749 43 1 -2.5136 -3.4732 -8.5137 44 1 1.6983 -4.5312 1.0285 45 1 2.6591 -3.1645 1.8099 46 1 0.5081 -1.8797 2.2085 47 1 -0.4535 -3.2457 1.4272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830772360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:33 Heat of formation + Delta-G solvation = -155.218122 kcal Electronic energy + Delta-G solvation = -28726.910349 eV Core-core repulsion = 24615.962390 eV Total energy + Delta-G solvation = -4110.947959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88491 -38.54691 -36.78580 -36.41037 -36.29442 -35.18247 -34.62942 -32.06539 -31.21418 -30.55758 -28.22006 -27.49595 -25.47759 -23.23480 -22.95407 -21.23148 -21.05020 -20.29071 -19.85270 -18.89802 -17.88546 -17.40396 -16.72101 -16.38534 -16.23736 -15.86710 -15.25801 -15.00855 -14.74264 -14.59145 -14.48340 -14.26999 -13.81646 -13.72058 -13.48624 -13.16164 -13.07594 -12.73483 -12.62578 -11.98948 -11.85643 -11.69339 -11.56779 -11.52617 -11.33736 -11.29888 -11.22677 -11.14973 -11.04698 -10.95266 -10.80305 -10.60945 -10.58132 -10.47915 -10.27115 -10.16058 -9.80391 -9.42041 -8.97935 -8.58471 -8.13094 -6.16460 -4.26957 0.93521 2.02049 2.38570 3.29836 3.35274 3.36598 3.40807 4.24432 4.27987 4.30803 4.35648 4.48202 4.56843 4.75477 4.76891 4.90017 4.97990 5.01906 5.06663 5.10487 5.16662 5.18248 5.19790 5.22717 5.38681 5.46969 5.57874 5.61567 5.67691 5.72198 5.79167 5.85784 5.86714 5.94354 5.96567 6.22621 6.28905 6.34289 6.57587 6.70960 6.95812 7.13355 7.21966 7.37432 7.57057 7.78401 8.17861 8.78862 9.44456 10.91117 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.002572 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.345919 B =10882.682393 C =11508.763714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.082 3.918 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.554 4.554 11 S 2.608 3.392 12 O -0.965 6.965 13 O -0.947 6.947 14 N -1.127 6.127 15 C 0.126 3.874 16 C 0.465 3.535 17 O -0.502 6.502 18 O -0.349 6.349 19 C 0.089 3.911 20 C -0.138 4.138 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.208 4.208 26 C -0.140 4.140 27 H 0.263 0.737 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.419 0.581 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 -9.355 -17.295 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.688 4.688 11 S 2.705 3.295 12 O -0.956 6.956 13 O -0.936 6.936 14 N -0.886 5.886 15 C -0.003 4.003 16 C 0.306 3.694 17 O -0.389 6.389 18 O -0.265 6.265 19 C 0.034 3.966 20 C -0.176 4.176 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.245 4.245 26 C -0.179 4.179 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.120 0.880 30 H 0.255 0.745 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.841 -9.234 -17.289 20.761 hybrid contribution -0.329 0.406 -0.006 0.523 sum -7.171 -8.828 -17.295 20.700 Atomic orbital electron populations 1.69973 1.06020 1.27232 1.47756 1.24951 0.94817 0.99229 0.93288 0.86576 0.80127 0.82769 0.78685 1.20003 1.21092 1.19459 1.20527 0.93733 0.88567 1.52533 0.91307 1.18277 0.99110 0.94385 0.84241 1.30002 1.16385 1.08644 1.13725 1.05261 0.76500 0.73655 0.74083 1.93526 1.65082 1.59477 1.77494 1.93541 1.74837 1.50780 1.74476 1.56044 1.61508 1.23649 1.47435 1.20661 0.96356 0.95653 0.87586 1.23636 0.75790 0.85399 0.84547 1.90635 1.48055 1.22256 1.77950 1.86551 1.60544 1.49869 1.29583 1.22822 0.96091 0.95288 0.82397 1.21966 0.99069 1.01248 0.95291 1.21485 0.97178 0.99973 0.96699 1.21609 0.94515 1.02005 0.98026 1.21510 0.99436 0.99739 0.94688 1.21628 0.94320 1.01700 0.97773 1.23208 0.98709 0.96070 1.06549 1.22557 0.92594 1.01031 1.01764 0.92701 0.84655 0.87965 0.74519 0.87200 0.85722 0.89604 0.90645 0.91144 0.91633 0.91235 0.91618 0.91568 0.91633 0.90970 0.90840 0.90456 0.90613 0.89478 0.89547 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.32 12.98 55.43 0.72 -22.60 16 2 C 0.08 2.19 5.38 -17.82 -0.10 2.09 16 3 Si 0.89 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.80 8.18 -34.44 -0.28 -14.08 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 9 C 0.04 1.00 1.32 -155.66 -0.21 0.80 16 10 C -0.55 -11.05 5.92 37.16 0.22 -10.83 16 11 S 2.61 51.35 5.19 -107.50 -0.56 50.80 16 12 O -0.97 -21.06 18.08 -57.54 -1.04 -22.10 16 13 O -0.95 -21.76 17.18 -57.54 -0.99 -22.75 16 14 N -1.13 -17.26 5.82 -11.65 -0.07 -17.33 16 15 C 0.13 1.64 6.72 -5.19 -0.03 1.60 16 16 C 0.46 6.12 8.00 36.01 0.29 6.41 16 17 O -0.50 -7.58 14.95 -18.75 -0.28 -7.86 16 18 O -0.35 -4.09 9.88 -39.24 -0.39 -4.47 16 19 C 0.09 0.87 2.45 -26.73 -0.07 0.81 16 20 C -0.14 -1.25 5.56 -26.74 -0.15 -1.40 16 21 C -0.12 -0.81 5.92 -26.74 -0.16 -0.97 16 22 C -0.12 -0.73 5.92 -26.73 -0.16 -0.88 16 23 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 24 C -0.12 -0.88 5.58 -26.73 -0.15 -1.03 16 25 C -0.21 -4.48 9.96 -26.70 -0.27 -4.75 16 26 C -0.14 -3.11 9.49 -26.69 -0.25 -3.37 16 27 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 28 H 0.14 2.71 8.14 -51.93 -0.42 2.29 16 29 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 30 H 0.42 6.11 7.67 -34.47 -0.26 5.84 16 31 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.13 1.60 7.71 -51.93 -0.40 1.20 16 33 H 0.09 0.91 7.16 -51.93 -0.37 0.54 16 34 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 46 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 47 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -32.75 398.32 -10.86 -43.61 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.77 Total: 7.22 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -1.47 Total: -26.46 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.65 Total: -39.93 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -2.70 Total: -57.19 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 51.35 SS G_CDS: -0.56 Total: 50.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.75 -10.86 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830772360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.609 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds