Wall clock time and date at job start Wed Apr 1 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99924 * 2 1 4 4 H 1.48498 * 109.46898 * 269.99816 * 3 2 1 5 5 H 1.48499 * 109.46936 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.46925 * 150.00029 * 3 2 1 7 7 C 1.37874 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99846 * 172.23666 * 7 2 1 9 9 C 1.50693 * 120.00327 * 352.23443 * 7 2 1 10 10 C 1.53004 * 115.55085 * 84.78416 * 9 7 2 11 11 S 1.81401 * 109.47124 * 65.19431 * 10 9 7 12 12 O 1.42104 * 110.54076 * 62.18388 * 11 10 9 13 13 O 1.42097 * 110.54368 * 285.43706 * 11 10 9 14 14 N 1.65598 * 104.44942 * 173.80914 * 11 10 9 15 15 C 1.46499 * 119.99908 * 64.72687 * 14 11 10 16 16 C 1.50704 * 109.47081 * 165.27477 * 15 14 11 17 17 O 1.20824 * 119.99694 * 359.97438 * 16 15 14 18 18 O 1.34224 * 119.99850 * 179.97438 * 16 15 14 19 19 C 1.45198 * 116.99907 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47382 * 270.00299 * 19 18 16 21 21 C 1.52993 * 109.47388 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47488 * 59.99500 * 21 20 19 23 23 C 1.52997 * 109.47214 * 300.00606 * 22 21 20 24 24 C 1.52999 * 109.47448 * 59.99652 * 23 22 21 25 25 C 1.53000 * 117.50236 * 230.45593 * 9 7 2 26 26 C 1.53005 * 117.50046 * 299.11190 * 9 7 2 27 27 H 0.97003 * 120.00122 * 5.03511 * 1 2 3 28 28 H 1.08992 * 109.46973 * 305.19547 * 10 9 7 29 29 H 1.09002 * 109.47083 * 185.19646 * 10 9 7 30 30 H 0.97001 * 119.99700 * 245.00306 * 14 11 10 31 31 H 1.08998 * 109.46807 * 285.27522 * 15 14 11 32 32 H 1.09001 * 109.46891 * 45.27624 * 15 14 11 33 33 H 1.08996 * 109.47162 * 30.00257 * 19 18 16 34 34 H 1.09010 * 109.47007 * 300.00178 * 20 19 18 35 35 H 1.08994 * 109.47320 * 59.99659 * 20 19 18 36 36 H 1.09010 * 109.47016 * 299.99957 * 21 20 19 37 37 H 1.08999 * 109.47368 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47438 * 179.97438 * 22 21 20 39 39 H 1.09010 * 109.46619 * 60.00214 * 22 21 20 40 40 H 1.08996 * 109.46938 * 299.99453 * 23 22 21 41 41 H 1.09007 * 109.47196 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47428 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47072 * 59.99563 * 24 23 22 44 44 H 1.08999 * 117.50399 * 215.00328 * 25 9 7 45 45 H 1.09006 * 117.49780 * 0.02562 * 25 9 7 46 46 H 1.09000 * 117.49458 * 359.97438 * 26 9 7 47 47 H 1.09000 * 117.49939 * 144.97104 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0771 -1.1984 -0.1258 9 6 1.2614 -2.4930 0.1774 10 6 0.6670 -3.0924 -1.0987 11 16 2.0072 -3.5642 -2.2264 12 8 2.8269 -4.5637 -1.6361 13 8 2.5779 -2.4124 -2.8321 14 7 1.2440 -4.3447 -3.4716 15 6 0.3133 -3.6126 -4.3342 16 6 0.0393 -4.4199 -5.5769 17 8 0.5676 -5.4961 -5.7268 18 8 -0.7917 -3.9433 -6.5171 19 6 -1.0085 -4.7745 -7.6877 20 6 0.0279 -4.4279 -8.7585 21 6 -0.2010 -5.3032 -9.9922 22 6 -1.6064 -5.0518 -10.5424 23 6 -2.6428 -5.3984 -9.4716 24 6 -2.4139 -4.5230 -8.2379 25 6 1.7803 -3.4649 1.2391 26 6 0.4826 -2.6898 1.4797 27 1 -0.4850 0.8368 -0.0737 28 1 0.0275 -2.3544 -1.5829 29 1 0.0776 -3.9738 -0.8458 30 1 1.4101 -5.2876 -3.6273 31 1 -0.6205 -3.4417 -3.7986 32 1 0.7530 -2.6549 -4.6127 33 1 -0.9085 -5.8242 -7.4117 34 1 -0.0721 -3.3781 -9.0346 35 1 1.0291 -4.6066 -8.3664 36 1 -0.1013 -6.3531 -9.7164 37 1 0.5371 -5.0559 -10.7552 38 1 -1.7693 -5.6751 -11.4216 39 1 -1.7061 -4.0019 -10.8182 40 1 -2.5431 -6.4482 -9.1959 41 1 -3.6440 -5.2189 -9.8635 42 1 -3.1520 -4.7703 -7.4749 43 1 -2.5136 -3.4732 -8.5137 44 1 1.6983 -4.5312 1.0285 45 1 2.6591 -3.1645 1.8099 46 1 0.5081 -1.8797 2.2085 47 1 -0.4535 -3.2457 1.4272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830772360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:32 Heat of formation + Delta-G solvation = -175.762086 kcal Electronic energy + Delta-G solvation = -28727.801202 eV Core-core repulsion = 24615.962390 eV Total energy + Delta-G solvation = -4111.838812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85423 -39.30414 -38.54483 -37.99927 -37.26825 -36.83902 -35.86205 -34.05258 -31.79991 -31.25024 -29.85159 -28.58100 -27.45219 -23.96532 -23.57273 -22.96035 -21.99407 -21.55308 -20.89492 -20.40552 -19.17291 -18.48500 -18.32419 -17.75199 -17.43874 -16.91952 -16.77476 -16.63068 -16.13619 -15.71213 -15.42078 -15.28780 -15.05606 -14.89855 -14.55845 -14.33133 -13.87223 -13.73921 -13.64445 -13.60361 -13.22383 -13.12372 -13.09582 -12.93594 -12.88302 -12.83360 -12.42524 -12.41491 -12.20259 -12.12628 -12.02601 -11.90174 -11.89956 -11.55871 -11.46351 -11.35853 -10.94237 -10.84901 -10.73095 -10.51376 -9.87850 -8.16550 -6.30599 -0.61613 0.98566 1.39663 1.41517 1.44276 1.52262 2.00512 2.42432 2.91641 3.10353 3.37999 3.39565 3.43954 3.62058 3.64768 3.91718 3.96466 4.14193 4.15899 4.19488 4.20891 4.27921 4.32725 4.43784 4.48690 4.49362 4.57921 4.61522 4.64299 4.85079 4.87205 4.90949 5.01510 5.03326 5.14645 5.15744 5.24677 5.26117 5.29548 5.34602 5.48608 5.51013 5.62279 5.75179 5.93148 6.25696 6.56019 6.75175 7.41596 8.90276 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.002572 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.345919 B =10882.682393 C =11508.763714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.046 3.954 3 Si 0.933 3.067 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.011 3.989 10 C -0.549 4.549 11 S 2.626 3.374 12 O -0.990 6.990 13 O -0.986 6.986 14 N -1.115 6.115 15 C 0.114 3.886 16 C 0.470 3.530 17 O -0.526 6.526 18 O -0.349 6.349 19 C 0.081 3.919 20 C -0.138 4.138 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.200 4.200 26 C -0.136 4.136 27 H 0.266 0.734 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.425 0.575 31 H 0.144 0.856 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -9.896 -18.331 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.157 4.157 3 Si 0.758 3.242 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.066 0.934 9 C 0.008 3.992 10 C -0.683 4.683 11 S 2.724 3.276 12 O -0.980 6.980 13 O -0.976 6.976 14 N -0.878 5.878 15 C -0.013 4.013 16 C 0.313 3.687 17 O -0.415 6.415 18 O -0.265 6.265 19 C 0.027 3.973 20 C -0.176 4.176 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.237 4.237 26 C -0.175 4.175 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.158 0.842 30 H 0.262 0.738 31 H 0.161 0.839 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.518 -9.770 -18.330 22.450 hybrid contribution 0.185 0.547 0.280 0.642 sum -8.332 -9.223 -18.050 21.916 Atomic orbital electron populations 1.70000 1.06418 1.27823 1.48178 1.25459 0.95616 1.01295 0.93353 0.85939 0.79255 0.80462 0.78516 1.20108 1.19958 1.19788 1.20690 0.93156 0.90622 1.52822 0.93394 1.18412 1.00356 0.94243 0.86154 1.29872 1.16370 1.10011 1.12017 1.04433 0.76318 0.72684 0.74153 1.93483 1.66334 1.59886 1.78333 1.93490 1.76104 1.52592 1.75413 1.55533 1.61752 1.23747 1.46718 1.20975 0.97242 0.95239 0.87828 1.23575 0.75535 0.84908 0.84685 1.90627 1.49056 1.23311 1.78472 1.86545 1.59872 1.50159 1.29896 1.23103 0.97857 0.94523 0.81828 1.21976 0.97705 1.01934 0.95948 1.21492 0.98485 0.99265 0.95893 1.21610 0.93384 1.02561 0.98363 1.21530 1.00343 0.99339 0.93913 1.21663 0.92595 1.02314 0.98481 1.23259 0.98230 0.96995 1.05193 1.22522 0.93854 1.00767 1.00375 0.92451 0.84699 0.84233 0.73821 0.83887 0.85583 0.90598 0.90332 0.93237 0.91954 0.90509 0.90252 0.91200 0.91639 0.89344 0.90568 0.90133 0.88289 0.90100 0.91548 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.83 12.98 21.45 0.28 -46.55 16 2 C 0.05 2.45 5.38 84.65 0.46 2.90 16 3 Si 0.93 42.92 29.55 68.60 2.03 44.95 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -28.78 8.18 25.60 0.21 -28.57 16 8 H 0.05 2.70 7.83 -2.91 -0.02 2.67 16 9 C 0.01 0.49 1.32 -52.93 -0.07 0.42 16 10 C -0.55 -20.93 5.92 71.98 0.43 -20.51 16 11 S 2.63 101.62 5.19 -56.49 -0.29 101.33 16 12 O -0.99 -42.56 18.08 -127.65 -2.31 -44.87 16 13 O -0.99 -45.70 17.18 -127.65 -2.19 -47.89 16 14 N -1.12 -32.86 5.82 -190.79 -1.11 -33.97 16 15 C 0.11 2.82 6.72 85.63 0.58 3.40 16 16 C 0.47 12.00 8.00 71.24 0.57 12.57 16 17 O -0.53 -15.69 14.95 21.97 0.33 -15.37 16 18 O -0.35 -7.85 9.88 -51.35 -0.51 -8.36 16 19 C 0.08 1.53 2.45 30.59 0.08 1.61 16 20 C -0.14 -2.43 5.56 30.59 0.17 -2.26 16 21 C -0.11 -1.47 5.92 30.59 0.18 -1.29 16 22 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 23 C -0.11 -1.11 5.92 30.59 0.18 -0.93 16 24 C -0.11 -1.51 5.58 30.60 0.17 -1.34 16 25 C -0.20 -8.33 9.96 30.62 0.30 -8.03 16 26 C -0.14 -5.85 9.49 30.62 0.29 -5.56 16 27 H 0.27 13.34 8.32 -92.71 -0.77 12.57 16 28 H 0.13 5.18 8.14 -2.39 -0.02 5.16 16 29 H 0.14 4.18 8.09 -2.39 -0.02 4.16 16 30 H 0.42 11.92 7.67 -96.75 -0.74 11.18 16 31 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.13 3.13 7.71 -2.39 -0.02 3.11 16 33 H 0.08 1.59 7.16 -2.39 -0.02 1.57 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 41 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 45 H 0.08 3.42 8.14 -2.38 -0.02 3.40 16 46 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -69.71 398.32 0.16 -69.54 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.22 Total: 29.75 kcal Atomic # 6 Polarization: -52.29 SS G_CDS: 3.72 Total: -48.56 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -0.83 Total: -80.52 kcal Atomic # 8 Polarization: -111.81 SS G_CDS: -4.68 Total: -116.49 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 101.62 SS G_CDS: -0.29 Total: 101.33 kcal Total: -69.71 0.16 -69.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830772360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.218 kcal (2) G-P(sol) polarization free energy of solvation -69.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds